Wall clock time and date at job start Tue Mar 31 2020 05:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47261 * 2 1 4 4 C 1.52999 * 109.47248 * 239.99614 * 2 1 3 5 5 C 1.50701 * 109.47387 * 175.00235 * 4 2 1 6 6 H 1.08002 * 119.99545 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00380 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00010 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00251 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47068 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46798 * 119.99985 * 9 7 5 12 12 H 1.48499 * 109.47145 * 239.99878 * 9 7 5 13 13 N 1.46903 * 109.46908 * 119.99666 * 2 1 3 14 14 C 1.48671 * 110.99527 * 50.65640 * 13 2 1 15 15 C 1.54711 * 104.63625 * 201.60995 * 14 13 2 16 16 C 1.53001 * 104.57620 * 23.66196 * 15 14 13 17 17 C 1.53497 * 111.56940 * 121.38886 * 16 15 14 18 18 C 1.51974 * 102.22176 * 143.50199 * 17 16 15 19 19 C 1.47473 * 125.86297 * 165.71455 * 18 17 16 20 20 O 1.21470 * 120.00536 * 0.02562 * 19 18 17 21 21 O 1.34758 * 120.00099 * 179.97438 * 19 18 17 22 22 N 1.29218 * 108.27112 * 345.71017 * 18 17 16 23 23 O 1.41742 * 112.88009 * 359.75767 * 22 18 17 24 24 C 1.48856 * 111.00190 * 294.99042 * 13 2 1 25 25 H 1.08994 * 109.47377 * 292.66033 * 1 2 3 26 26 H 1.09008 * 109.46999 * 52.65689 * 1 2 3 27 27 H 1.08996 * 109.47422 * 172.64986 * 1 2 3 28 28 H 1.09000 * 109.47440 * 295.00548 * 4 2 1 29 29 H 1.09005 * 109.47190 * 55.00203 * 4 2 1 30 30 H 0.96995 * 120.00176 * 179.97438 * 8 7 5 31 31 H 1.09002 * 110.40445 * 82.82636 * 14 13 2 32 32 H 1.08992 * 110.50727 * 320.44880 * 14 13 2 33 33 H 1.08997 * 110.41431 * 264.88656 * 15 14 13 34 34 H 1.09004 * 110.41168 * 142.43585 * 15 14 13 35 35 H 1.08999 * 110.85419 * 261.68008 * 17 16 15 36 36 H 1.08995 * 110.85840 * 25.31238 * 17 16 15 37 37 H 0.96692 * 117.00594 * 180.02562 * 21 19 18 38 38 H 1.09002 * 110.46346 * 39.27571 * 24 13 2 39 39 H 1.09000 * 110.46221 * 276.68828 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6151 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3581 8 7 3.5764 -1.8372 -3.2999 9 14 6.0920 -1.0604 -2.4372 10 1 6.5837 -0.2911 -1.2660 11 1 6.6861 -2.4213 -2.4197 12 1 6.4861 -0.3643 -3.6883 13 7 2.0196 -0.6924 1.1995 14 6 1.3675 -2.0198 1.3518 15 6 1.5252 -2.3630 2.8521 16 6 1.6975 -1.0078 3.5411 17 6 0.6103 -0.7698 4.5982 18 6 1.3746 -0.0326 5.6854 19 6 0.7762 0.7059 6.8129 20 8 -0.4316 0.7609 6.9305 21 8 1.5692 1.3190 7.7135 22 7 2.6387 -0.1640 5.4522 23 8 2.9082 -0.9357 4.2942 24 6 1.6439 0.0491 2.4343 25 1 -0.3634 0.3959 0.9483 26 1 -0.3633 0.6234 -0.8171 27 1 -0.3634 -1.0192 -0.1315 28 1 1.7516 -1.7716 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 4.0607 -2.2433 -4.0356 31 1 1.8729 -2.7643 0.7366 32 1 0.3126 -1.9599 1.0846 33 1 2.4068 -2.9843 3.0094 34 1 0.6326 -2.8671 3.2226 35 1 -0.1909 -0.1486 4.1978 36 1 0.2191 -1.7159 4.9723 37 1 1.1313 1.7903 8.4353 38 1 0.6364 0.4551 2.3433 39 1 2.3605 0.8460 2.6331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592470901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:57 Heat of formation + Delta-G solvation = -49.227707 kcal Electronic energy + Delta-G solvation = -22659.567065 eV Core-core repulsion = 19183.932087 eV Total energy + Delta-G solvation = -3475.634978 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.35611 -40.30962 -38.21278 -36.66128 -34.23424 -33.35017 -32.25815 -29.89437 -29.09736 -27.34755 -25.90294 -25.48410 -23.37330 -22.06384 -21.05993 -20.51065 -18.81589 -18.44012 -17.23803 -16.46127 -16.18796 -16.14649 -15.85194 -15.23515 -14.86801 -14.43902 -14.19306 -13.90883 -13.59232 -13.25239 -12.87773 -12.81064 -12.19051 -12.11577 -11.82076 -11.77314 -11.64871 -11.51797 -11.37083 -11.35079 -11.02523 -10.94985 -10.71622 -10.57992 -10.35946 -10.00683 -9.81143 -9.21660 -9.00041 -8.26930 -7.73200 -5.89204 -3.87145 0.38328 1.96121 2.28882 2.82923 3.39806 3.47408 3.54435 3.91399 4.03109 4.30382 4.37562 4.57411 4.68215 4.73689 5.01142 5.13909 5.27140 5.34618 5.48380 5.54485 5.59085 5.69541 5.75555 5.78538 5.81231 5.88482 5.95095 6.17358 6.30433 6.49173 6.59250 6.79712 6.89700 7.29635 7.36041 7.44647 7.76424 7.89977 8.11373 8.56246 9.19397 9.75333 11.22724 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026174 B = 0.004037 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.493279 B = 6934.188030 C = 7425.619533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.073 3.927 3 H 0.072 0.928 4 C 0.033 3.967 5 C -0.491 4.491 6 H 0.061 0.939 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.288 1.288 13 N -0.472 5.472 14 C 0.030 3.970 15 C -0.113 4.113 16 C 0.068 3.932 17 C -0.116 4.116 18 C 0.041 3.959 19 C 0.567 3.433 20 O -0.489 6.489 21 O -0.495 6.495 22 N -0.205 5.205 23 O -0.144 6.144 24 C 0.015 3.985 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.257 0.743 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.422 0.578 38 H 0.058 0.942 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.150 2.722 18.822 21.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.035 4.035 3 H 0.090 0.910 4 C -0.004 4.004 5 C -0.530 4.530 6 H 0.080 0.920 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.195 5.195 14 C -0.098 4.098 15 C -0.152 4.152 16 C 0.027 3.973 17 C -0.156 4.156 18 C -0.151 4.151 19 C 0.407 3.593 20 O -0.374 6.374 21 O -0.306 6.306 22 N 0.052 4.948 23 O -0.170 6.170 24 C -0.113 4.113 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.282 0.718 38 H 0.076 0.924 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.520 2.580 18.624 20.250 hybrid contribution -0.907 0.256 0.032 0.943 sum -8.427 2.837 18.656 20.667 Atomic orbital electron populations 1.22557 0.99614 1.01806 1.00611 1.22103 0.90218 0.98846 0.92308 0.90977 1.19139 0.96481 0.95258 0.89514 1.21218 0.91743 1.33004 1.07038 0.92039 1.24994 0.98101 0.95795 0.95934 1.69972 1.35175 1.37025 1.12353 0.86572 0.86346 0.77638 0.77683 1.19682 1.21277 1.21412 1.65788 1.52447 1.01233 1.00026 1.23270 0.98356 0.94089 0.94072 1.22382 1.03292 0.93715 0.95824 1.23008 0.82934 0.99236 0.92117 1.22918 1.00154 1.01745 0.90739 1.24771 0.93852 0.99806 0.96706 1.19228 0.83947 0.75956 0.80163 1.90971 1.14820 1.57773 1.73810 1.84659 1.43338 1.64218 1.38368 1.78650 1.16014 1.00204 0.99901 1.91277 1.30657 1.67530 1.27496 1.23493 1.00540 0.96282 0.91024 0.93939 0.92283 0.92343 0.96330 0.96253 0.93371 0.88684 0.93048 0.88949 0.90072 0.86839 0.86898 0.71840 0.92369 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.97 8.27 37.16 0.31 -2.67 16 2 C 0.07 1.44 2.31 -67.71 -0.16 1.29 16 3 H 0.07 1.47 8.13 -51.93 -0.42 1.05 16 4 C 0.03 0.82 4.44 -27.88 -0.12 0.70 16 5 C -0.49 -13.76 8.84 -34.44 -0.30 -14.06 16 6 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 9 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 N -0.47 -8.69 5.08 -222.25 -1.13 -9.82 16 14 C 0.03 0.48 5.51 -1.94 -0.01 0.47 16 15 C -0.11 -1.45 6.49 -25.83 -0.17 -1.61 16 16 C 0.07 0.90 1.29 -90.30 -0.12 0.78 16 17 C -0.12 -1.19 5.97 -27.00 -0.16 -1.35 16 18 C 0.04 0.46 7.32 -79.30 -0.58 -0.12 16 19 C 0.57 5.59 8.34 34.49 0.29 5.88 16 20 O -0.49 -5.55 17.74 -19.24 -0.34 -5.89 16 21 O -0.49 -3.70 13.43 -40.65 -0.55 -4.25 16 22 N -0.21 -2.85 12.53 35.35 0.44 -2.41 16 23 O -0.14 -2.25 11.92 -11.54 -0.14 -2.39 16 24 C 0.02 0.23 5.73 -2.67 -0.02 0.21 16 25 H 0.04 0.58 5.99 -51.93 -0.31 0.27 16 26 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 27 H 0.06 0.91 6.34 -51.93 -0.33 0.58 16 28 H 0.02 0.48 7.04 -51.93 -0.37 0.12 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 31 H 0.09 1.73 7.66 -51.93 -0.40 1.33 16 32 H 0.05 0.75 5.42 -51.93 -0.28 0.47 16 33 H 0.09 1.24 8.03 -51.93 -0.42 0.82 16 34 H 0.08 0.78 7.45 -51.93 -0.39 0.39 16 35 H 0.11 1.02 7.48 -51.93 -0.39 0.63 16 36 H 0.11 0.93 7.59 -51.93 -0.39 0.54 16 37 H 0.42 0.82 9.11 45.56 0.42 1.24 16 38 H 0.06 0.77 5.21 -51.93 -0.27 0.50 16 39 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 LS Contribution 320.71 15.07 4.83 4.83 Total: -1.00 -33.53 320.71 -6.66 -40.19 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -4.36 Total: -1.99 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.14 Total: -9.11 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.05 Total: -38.62 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -1.02 Total: -12.52 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.53 -6.66 -40.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592470901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.042 kcal (2) G-P(sol) polarization free energy of solvation -33.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds