Wall clock time and date at job start Tue Mar 31 2020 05:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47261 * 2 1 4 4 C 1.52999 * 109.47248 * 239.99614 * 2 1 3 5 5 C 1.50701 * 109.47387 * 175.00235 * 4 2 1 6 6 H 1.08002 * 119.99545 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00380 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00010 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00251 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47068 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46798 * 119.99985 * 9 7 5 12 12 H 1.48499 * 109.47145 * 239.99878 * 9 7 5 13 13 N 1.46903 * 109.46908 * 119.99666 * 2 1 3 14 14 C 1.48671 * 110.99527 * 50.65640 * 13 2 1 15 15 C 1.54711 * 104.63625 * 201.60995 * 14 13 2 16 16 C 1.53001 * 104.57620 * 23.66196 * 15 14 13 17 17 C 1.53497 * 111.56940 * 121.38886 * 16 15 14 18 18 C 1.51974 * 102.22176 * 143.50199 * 17 16 15 19 19 C 1.47473 * 125.86297 * 165.71455 * 18 17 16 20 20 O 1.21470 * 120.00536 * 0.02562 * 19 18 17 21 21 O 1.34758 * 120.00099 * 179.97438 * 19 18 17 22 22 N 1.29218 * 108.27112 * 345.71017 * 18 17 16 23 23 O 1.41742 * 112.88009 * 359.75767 * 22 18 17 24 24 C 1.48856 * 111.00190 * 294.99042 * 13 2 1 25 25 H 1.08994 * 109.47377 * 292.66033 * 1 2 3 26 26 H 1.09008 * 109.46999 * 52.65689 * 1 2 3 27 27 H 1.08996 * 109.47422 * 172.64986 * 1 2 3 28 28 H 1.09000 * 109.47440 * 295.00548 * 4 2 1 29 29 H 1.09005 * 109.47190 * 55.00203 * 4 2 1 30 30 H 0.96995 * 120.00176 * 179.97438 * 8 7 5 31 31 H 1.09002 * 110.40445 * 82.82636 * 14 13 2 32 32 H 1.08992 * 110.50727 * 320.44880 * 14 13 2 33 33 H 1.08997 * 110.41431 * 264.88656 * 15 14 13 34 34 H 1.09004 * 110.41168 * 142.43585 * 15 14 13 35 35 H 1.08999 * 110.85419 * 261.68008 * 17 16 15 36 36 H 1.08995 * 110.85840 * 25.31238 * 17 16 15 37 37 H 0.96692 * 117.00594 * 180.02562 * 21 19 18 38 38 H 1.09002 * 110.46346 * 39.27571 * 24 13 2 39 39 H 1.09000 * 110.46221 * 276.68828 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6151 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3581 8 7 3.5764 -1.8372 -3.2999 9 14 6.0920 -1.0604 -2.4372 10 1 6.5837 -0.2911 -1.2660 11 1 6.6861 -2.4213 -2.4197 12 1 6.4861 -0.3643 -3.6883 13 7 2.0196 -0.6924 1.1995 14 6 1.3675 -2.0198 1.3518 15 6 1.5252 -2.3630 2.8521 16 6 1.6975 -1.0078 3.5411 17 6 0.6103 -0.7698 4.5982 18 6 1.3746 -0.0326 5.6854 19 6 0.7762 0.7059 6.8129 20 8 -0.4316 0.7609 6.9305 21 8 1.5692 1.3190 7.7135 22 7 2.6387 -0.1640 5.4522 23 8 2.9082 -0.9357 4.2942 24 6 1.6439 0.0491 2.4343 25 1 -0.3634 0.3959 0.9483 26 1 -0.3633 0.6234 -0.8171 27 1 -0.3634 -1.0192 -0.1315 28 1 1.7516 -1.7716 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 4.0607 -2.2433 -4.0356 31 1 1.8729 -2.7643 0.7366 32 1 0.3126 -1.9599 1.0846 33 1 2.4068 -2.9843 3.0094 34 1 0.6326 -2.8671 3.2226 35 1 -0.1909 -0.1486 4.1978 36 1 0.2191 -1.7159 4.9723 37 1 1.1313 1.7903 8.4353 38 1 0.6364 0.4551 2.3433 39 1 2.3605 0.8460 2.6331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592470901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:57 Heat of formation + Delta-G solvation = -74.878039 kcal Electronic energy + Delta-G solvation = -22660.679347 eV Core-core repulsion = 19183.932087 eV Total energy + Delta-G solvation = -3476.747260 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.30189 -41.12019 -39.47840 -37.34415 -35.75624 -34.47334 -34.03413 -31.12146 -30.38103 -29.09882 -26.95602 -26.37101 -25.14538 -23.58924 -21.97806 -21.38087 -20.29742 -19.18109 -18.40840 -18.10966 -17.33191 -17.09715 -17.01766 -16.50225 -16.28203 -15.82089 -15.35596 -15.01619 -14.75652 -14.36280 -14.25531 -13.84300 -13.71900 -13.61283 -13.19258 -12.91395 -12.82232 -12.72218 -12.60924 -12.55084 -12.46238 -12.29866 -12.19645 -12.03006 -11.79118 -11.70773 -11.15295 -11.07305 -10.75616 -10.49680 -9.07835 -8.11840 -6.16157 -0.45630 1.17788 1.39023 1.40843 1.51349 1.54004 1.96923 2.46342 2.95381 3.03227 3.22385 3.33695 3.48374 3.58674 3.69964 4.12879 4.19738 4.25232 4.37628 4.38905 4.45700 4.55157 4.56435 4.59952 4.75057 4.77797 4.95313 5.04047 5.14368 5.19560 5.25389 5.31487 5.45512 5.68239 5.85747 5.89862 6.15091 6.26102 6.46843 6.73975 6.97718 7.49959 9.00087 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026174 B = 0.004037 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.493279 B = 6934.188030 C = 7425.619533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 H 0.059 0.941 4 C 0.040 3.960 5 C -0.502 4.502 6 H 0.051 0.949 7 C -0.001 4.001 8 N -0.937 5.937 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.508 5.508 14 C 0.030 3.970 15 C -0.104 4.104 16 C 0.066 3.934 17 C -0.110 4.110 18 C 0.058 3.942 19 C 0.577 3.423 20 O -0.501 6.501 21 O -0.493 6.493 22 N -0.237 5.237 23 O -0.181 6.181 24 C 0.019 3.981 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.061 0.939 28 H -0.001 1.001 29 H -0.006 1.006 30 H 0.259 0.741 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.445 0.555 38 H 0.083 0.917 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.510 3.104 21.003 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.027 4.027 3 H 0.077 0.923 4 C 0.003 3.997 5 C -0.541 4.541 6 H 0.069 0.931 7 C -0.198 4.198 8 N -0.579 5.579 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.205 1.205 13 N -0.232 5.232 14 C -0.098 4.098 15 C -0.142 4.142 16 C 0.026 3.974 17 C -0.149 4.149 18 C -0.135 4.135 19 C 0.417 3.583 20 O -0.387 6.387 21 O -0.308 6.308 22 N 0.019 4.981 23 O -0.203 6.203 24 C -0.109 4.109 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.017 0.983 29 H 0.012 0.988 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.141 0.859 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.310 0.690 38 H 0.101 0.899 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.869 2.970 20.820 22.825 hybrid contribution -0.491 0.193 -0.573 0.779 sum -9.360 3.163 20.248 22.530 Atomic orbital electron populations 1.22414 0.96299 1.02326 1.02433 1.21753 0.92826 0.97225 0.90879 0.92270 1.18975 0.94873 0.94446 0.91420 1.21518 0.93590 1.32406 1.06544 0.93057 1.25782 1.02609 0.95634 0.95743 1.70078 1.36889 1.37983 1.12991 0.85583 0.81029 0.77729 0.77803 1.19522 1.20763 1.20529 1.65572 1.54152 1.02688 1.00775 1.23225 0.98593 0.92036 0.95917 1.22365 1.04692 0.93744 0.93442 1.23003 0.83697 0.98413 0.92314 1.22984 0.99227 1.03422 0.89242 1.25194 0.93418 0.98145 0.96765 1.18947 0.83583 0.75751 0.80041 1.90979 1.15243 1.58340 1.74138 1.84622 1.43414 1.63929 1.38800 1.78676 1.17464 1.01958 1.00023 1.91254 1.32152 1.68337 1.28560 1.23483 1.01139 0.96180 0.90074 0.90766 0.92148 0.92051 0.98292 0.98780 0.93201 0.92247 0.91176 0.90258 0.85908 0.84760 0.83976 0.69024 0.89911 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.31 8.27 71.98 0.60 -4.71 16 2 C 0.08 3.24 2.31 44.91 0.10 3.35 16 3 H 0.06 2.45 8.13 -2.39 -0.02 2.44 16 4 C 0.04 2.07 4.44 29.85 0.13 2.20 16 5 C -0.50 -29.05 8.84 25.60 0.23 -28.82 16 6 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 8 N -0.94 -57.63 13.29 21.45 0.28 -57.34 16 9 Si 0.95 46.55 29.54 68.60 2.03 48.58 16 10 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 N -0.51 -18.78 5.08 -857.07 -4.35 -23.13 16 14 C 0.03 0.94 5.51 86.54 0.48 1.42 16 15 C -0.10 -2.46 6.49 31.18 0.20 -2.26 16 16 C 0.07 1.63 1.29 -10.58 -0.01 1.62 16 17 C -0.11 -1.82 5.97 30.42 0.18 -1.64 16 18 C 0.06 1.16 7.32 45.79 0.34 1.49 16 19 C 0.58 9.62 8.34 70.26 0.59 10.20 16 20 O -0.50 -9.65 17.74 19.93 0.35 -9.30 16 21 O -0.49 -5.99 13.43 -56.69 -0.76 -6.75 16 22 N -0.24 -6.28 12.53 -42.07 -0.53 -6.81 16 23 O -0.18 -5.55 11.92 -39.10 -0.47 -6.01 16 24 C 0.02 0.56 5.73 85.97 0.49 1.05 16 25 H 0.07 1.76 5.99 -2.39 -0.01 1.75 16 26 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.06 1.81 6.34 -2.39 -0.02 1.80 16 28 H 0.00 -0.07 7.04 -2.39 -0.02 -0.09 16 29 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 30 H 0.26 15.07 8.31 -92.71 -0.77 14.29 16 31 H 0.06 2.25 7.66 -2.39 -0.02 2.23 16 32 H 0.07 1.91 5.42 -2.39 -0.01 1.89 16 33 H 0.08 2.10 8.03 -2.39 -0.02 2.08 16 34 H 0.12 1.87 7.45 -2.39 -0.02 1.85 16 35 H 0.13 1.75 7.48 -2.39 -0.02 1.73 16 36 H 0.14 1.62 7.59 -2.39 -0.02 1.60 16 37 H 0.45 0.34 9.11 -74.06 -0.67 -0.33 16 38 H 0.08 1.92 5.21 -2.39 -0.01 1.91 16 39 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 Total: -1.00 -75.16 320.71 0.75 -74.41 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: 0.41 Total: 2.08 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: 3.78 Total: -15.73 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -4.60 Total: -87.28 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.87 Total: -22.07 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -75.16 0.75 -74.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592470901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.466 kcal (2) G-P(sol) polarization free energy of solvation -75.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds