Wall clock time and date at job start Tue Mar 31 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42903 * 113.99831 * 2 1 4 4 C 1.50700 * 110.64206 * 301.72578 * 3 2 1 5 5 O 1.20830 * 119.99291 * 142.35308 * 4 3 2 6 6 O 1.34224 * 120.00292 * 322.35139 * 4 3 2 7 7 C 1.54595 * 110.72216 * 178.57651 * 3 2 1 8 8 C 1.53989 * 105.13888 * 263.60043 * 7 3 2 9 9 N 1.47903 * 107.06010 * 1.22365 * 8 7 3 10 10 C 1.46900 * 111.00191 * 214.15421 * 9 8 7 11 11 C 1.52993 * 109.47331 * 294.73888 * 10 9 8 12 12 H 1.09000 * 109.47454 * 56.17253 * 11 10 9 13 13 C 1.47204 * 109.47274 * 296.17101 * 11 10 9 14 14 N 5.55801 * 104.25117 * 94.43564 * 2 1 3 15 15 C 1.53004 * 109.47267 * 176.17024 * 11 10 9 16 16 C 1.50695 * 109.47286 * 184.99854 * 15 11 10 17 17 H 1.08001 * 120.00167 * 359.97438 * 16 15 11 18 18 C 1.37879 * 120.00272 * 180.02562 * 16 15 11 19 19 N 1.31515 * 119.99665 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00321 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47099 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47250 * 299.99859 * 20 18 16 23 23 H 1.48503 * 109.46867 * 59.99989 * 20 18 16 24 24 C 1.48530 * 105.81862 * 334.67055 * 9 8 7 25 25 H 1.08998 * 109.46754 * 181.20319 * 1 2 3 26 26 H 1.08997 * 109.46977 * 301.20281 * 1 2 3 27 27 H 1.08996 * 109.47233 * 61.20256 * 1 2 3 28 28 H 0.96705 * 116.99782 * 180.02562 * 6 4 3 29 29 H 1.09000 * 110.30784 * 144.68411 * 7 3 2 30 30 H 1.09008 * 110.30963 * 22.51469 * 7 3 2 31 31 H 1.09000 * 109.91735 * 241.87249 * 8 7 3 32 32 H 1.09002 * 110.08319 * 120.66717 * 8 7 3 33 33 H 1.08996 * 109.47016 * 174.73202 * 10 9 8 34 34 H 1.09005 * 109.46877 * 54.73701 * 10 9 8 35 35 H 1.09004 * 109.46830 * 64.99581 * 15 11 10 36 36 H 1.08995 * 109.46912 * 305.00343 * 15 11 10 37 37 H 0.97000 * 120.00184 * 0.02562 * 19 18 16 38 38 H 1.09004 * 110.66390 * 157.63797 * 24 9 8 39 39 H 1.08995 * 110.67006 * 280.76913 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5489 2.0924 -1.1995 5 8 1.3229 3.2749 -1.0957 6 8 1.3889 1.4799 -2.3831 7 6 3.5533 1.2173 0.0359 8 6 3.9306 1.3747 1.5205 9 7 2.6672 1.5118 2.2772 10 6 2.8357 2.4139 3.4243 11 6 3.8125 1.7911 4.4237 12 1 4.7550 1.5718 3.9222 13 6 3.2396 0.5450 4.9583 14 7 2.7973 -0.4166 5.3708 15 6 4.0618 2.7714 5.5717 16 6 5.1155 2.2105 6.4914 17 1 5.5625 1.2506 6.2787 18 6 5.5084 2.9222 7.6050 19 7 4.9638 4.0909 7.8643 20 14 6.8141 2.2266 8.7454 21 1 7.0561 3.1782 9.8596 22 1 6.3500 0.9276 9.2953 23 1 8.0747 2.0214 7.9877 24 6 1.6754 2.0548 1.3141 25 1 -0.3633 -1.0274 0.0216 26 1 -0.3633 0.5324 0.8790 27 1 -0.3633 0.4950 -0.9005 28 1 1.0916 2.0263 -3.1235 29 1 3.9920 2.0225 -0.5534 30 1 3.8858 0.2490 -0.3383 31 1 4.5429 2.2664 1.6555 32 1 4.4753 0.4951 1.8636 33 1 1.8716 2.5706 3.9079 34 1 3.2291 3.3703 3.0796 35 1 3.1366 2.9221 6.1281 36 1 4.4021 3.7248 5.1678 37 1 4.2855 4.4520 7.2723 38 1 0.6599 1.8274 1.6386 39 1 1.8089 3.1293 1.1891 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599076973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:04 Heat of formation + Delta-G solvation = -106.029457 kcal Electronic energy + Delta-G solvation = -22484.443400 eV Core-core repulsion = 19006.345313 eV Total energy + Delta-G solvation = -3478.098086 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29479 -39.22203 -37.51903 -36.61568 -35.89713 -34.00453 -32.62963 -30.59320 -29.10258 -27.12660 -26.26913 -24.25107 -23.25237 -22.10638 -21.08048 -20.48438 -18.79331 -17.82174 -17.30451 -16.64771 -16.40143 -15.82895 -15.65907 -15.10754 -14.74277 -14.60025 -13.84552 -13.79360 -13.71854 -13.37223 -13.05690 -12.69985 -12.43429 -12.19791 -12.10345 -11.95123 -11.86420 -11.78362 -11.60847 -11.37403 -11.18660 -10.97586 -10.84591 -10.68210 -10.35445 -10.15442 -10.03879 -9.86075 -8.68016 -8.48933 -8.40762 -6.43817 -4.15107 1.65359 2.43312 3.24907 3.42707 3.45751 3.63106 3.66788 3.75410 3.88188 4.10781 4.23034 4.50837 4.69382 4.79238 4.90973 4.96034 5.00729 5.10389 5.24985 5.33049 5.34796 5.36870 5.49371 5.51796 5.58293 5.72621 5.83485 5.91579 6.01389 6.21176 6.28567 6.59139 6.77912 6.92122 7.07594 7.22701 7.44266 8.02317 8.34612 8.53416 8.78546 9.56054 10.96960 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.032236 B = 0.003615 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.385301 B = 7743.646735 C = 8031.356691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.339 6.339 3 C 0.125 3.875 4 C 0.466 3.534 5 O -0.504 6.504 6 O -0.503 6.503 7 C -0.111 4.111 8 C 0.034 3.966 9 N -0.508 5.508 10 C 0.052 3.948 11 C 0.020 3.980 12 H 0.101 0.899 13 C 0.254 3.746 14 N -0.472 5.472 15 C 0.018 3.982 16 C -0.606 4.606 17 H 0.051 0.949 18 C 0.021 3.979 19 N -0.908 5.908 20 Si 1.066 2.934 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.286 1.286 24 C 0.023 3.977 25 H 0.096 0.904 26 H 0.051 0.949 27 H 0.041 0.959 28 H 0.407 0.593 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.017 0.983 36 H 0.028 0.972 37 H 0.269 0.731 38 H 0.094 0.906 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 -2.760 -21.197 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.082 3.918 4 C 0.306 3.694 5 O -0.391 6.391 6 O -0.315 6.315 7 C -0.149 4.149 8 C -0.094 4.094 9 N -0.232 5.232 10 C -0.077 4.077 11 C -0.002 4.002 12 H 0.119 0.881 13 C -0.063 4.063 14 N -0.149 5.149 15 C -0.021 4.021 16 C -0.644 4.644 17 H 0.069 0.931 18 C -0.184 4.184 19 N -0.544 5.544 20 Si 0.894 3.106 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.213 1.213 24 C -0.105 4.105 25 H 0.114 0.886 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.266 0.734 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.188 -4.493 -18.602 20.112 hybrid contribution -0.909 1.439 -2.414 2.953 sum -7.097 -3.054 -21.015 22.391 Atomic orbital electron populations 1.22940 0.80672 1.03817 1.00099 1.88107 1.20039 1.23420 1.94097 1.22273 0.96549 0.84120 0.88849 1.24204 0.73579 0.86859 0.84734 1.90752 1.46249 1.17001 1.85140 1.84657 1.79731 1.46838 1.20235 1.22490 0.89276 1.04677 0.98407 1.22966 0.92683 1.02945 0.90784 1.64857 1.06355 1.45554 1.06422 1.22484 1.00685 0.93746 0.90804 1.19022 0.96680 0.87857 0.96653 0.88070 1.28715 0.92344 0.93719 0.91562 1.80983 1.10453 1.12534 1.10930 1.19293 0.97772 0.93428 0.91604 1.21954 1.23988 1.07146 1.11310 0.93057 1.25790 1.00211 0.94885 0.97470 1.70808 1.26437 1.17565 1.39602 0.83579 0.75397 0.75518 0.76141 1.20696 1.21411 1.21256 1.23674 0.98880 0.98395 0.89566 0.88555 0.93089 0.94071 0.73376 0.89620 0.88172 0.92107 0.88985 0.89891 0.92381 0.96448 0.95396 0.92060 0.88785 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.45 101.05 1.06 1.25 16 2 O -0.34 -4.02 10.28 -46.41 -0.48 -4.50 16 3 C 0.12 1.38 0.96 -89.91 -0.09 1.29 16 4 C 0.47 4.86 5.97 36.01 0.21 5.07 16 5 O -0.50 -6.39 16.52 -18.75 -0.31 -6.70 16 6 O -0.50 -3.97 12.69 -43.78 -0.56 -4.52 16 7 C -0.11 -1.11 6.26 -25.38 -0.16 -1.27 16 8 C 0.03 0.40 5.51 -2.76 -0.02 0.38 16 9 N -0.51 -6.91 4.97 -230.46 -1.15 -8.05 16 10 C 0.05 0.76 4.11 -3.83 -0.02 0.75 16 11 C 0.02 0.37 2.15 -93.41 -0.20 0.16 16 12 H 0.10 1.75 7.22 -51.93 -0.37 1.37 16 13 C 0.25 5.36 13.64 -20.76 -0.28 5.08 16 14 N -0.47 -10.85 18.54 42.15 0.78 -10.06 16 15 C 0.02 0.40 3.74 -27.88 -0.10 0.30 16 16 C -0.61 -16.23 8.60 -34.44 -0.30 -16.53 16 17 H 0.05 1.38 7.59 -52.49 -0.40 0.98 16 18 C 0.02 0.58 5.46 -17.82 -0.10 0.49 16 19 N -0.91 -26.65 13.65 55.43 0.76 -25.89 16 20 Si 1.07 24.91 29.90 -169.99 -5.08 19.82 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 24 C 0.02 0.27 5.37 -1.90 -0.01 0.26 16 25 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.47 6.30 -51.93 -0.33 0.14 16 27 H 0.04 0.34 6.80 -51.93 -0.35 -0.01 16 28 H 0.41 1.35 9.10 45.56 0.41 1.76 16 29 H 0.09 0.73 7.84 -51.93 -0.41 0.33 16 30 H 0.10 0.94 8.08 -51.92 -0.42 0.52 16 31 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 32 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 0.78 7.95 -51.93 -0.41 0.37 16 35 H 0.02 0.42 8.01 -51.93 -0.42 0.01 16 36 H 0.03 0.63 8.01 -51.93 -0.42 0.22 16 37 H 0.27 7.72 7.22 -40.82 -0.29 7.43 16 38 H 0.09 1.09 6.20 -51.93 -0.32 0.77 16 39 H 0.08 0.91 7.14 -51.93 -0.37 0.54 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -33.86 329.58 -5.62 -39.48 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -4.56 Total: -1.78 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 0.00 Total: -2.76 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.39 Total: -44.01 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -1.34 Total: -15.72 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.86 -5.62 -39.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599076973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.548 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds