Wall clock time and date at job start Tue Mar 31 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00069 * 2 1 4 4 C 1.50694 * 110.29206 * 57.25462 * 3 2 1 5 5 O 1.20830 * 119.99925 * 217.33504 * 4 3 2 6 6 O 1.34222 * 120.00210 * 37.32806 * 4 3 2 7 7 C 1.54260 * 110.32477 * 179.38371 * 3 2 1 8 8 C 1.54376 * 105.06412 * 118.89138 * 7 3 2 9 9 N 1.48564 * 104.59327 * 336.14605 * 8 7 3 10 10 C 1.46907 * 110.99801 * 159.03770 * 9 8 7 11 11 C 1.52999 * 109.46843 * 69.87580 * 10 9 8 12 12 H 1.08997 * 109.47248 * 304.99653 * 11 10 9 13 13 C 1.47205 * 109.47160 * 65.00029 * 11 10 9 14 14 N 5.80805 * 110.64266 * 272.08914 * 2 1 3 15 15 C 1.52999 * 109.46973 * 184.99666 * 11 10 9 16 16 C 1.50700 * 109.46921 * 174.99925 * 15 11 10 17 17 H 1.07997 * 120.00454 * 0.02562 * 16 15 11 18 18 C 1.37886 * 119.99789 * 180.02562 * 16 15 11 19 19 N 1.31519 * 120.00041 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99954 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47028 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47283 * 120.00236 * 20 18 16 23 23 H 1.48499 * 109.46903 * 239.99943 * 20 18 16 24 24 C 1.48559 * 104.21984 * 39.48427 * 9 8 7 25 25 H 1.08999 * 109.46664 * 64.50337 * 1 2 3 26 26 H 1.08999 * 109.47161 * 184.50274 * 1 2 3 27 27 H 1.08998 * 109.47285 * 304.50632 * 1 2 3 28 28 H 0.96703 * 117.00429 * 180.02562 * 6 4 3 29 29 H 1.09010 * 110.32234 * 359.97438 * 7 3 2 30 30 H 1.09003 * 110.40970 * 237.83669 * 7 3 2 31 31 H 1.09004 * 110.41535 * 217.37317 * 8 7 3 32 32 H 1.08993 * 110.51125 * 94.97713 * 8 7 3 33 33 H 1.08996 * 109.47209 * 309.87642 * 10 9 8 34 34 H 1.08996 * 109.46512 * 189.87281 * 10 9 8 35 35 H 1.09000 * 109.47286 * 295.00480 * 15 11 10 36 36 H 1.09006 * 109.46722 * 55.00509 * 15 11 10 37 37 H 0.96997 * 120.00022 * 180.02562 * 19 18 16 38 38 H 1.09001 * 110.41252 * 79.29194 * 24 9 8 39 39 H 1.09002 * 110.41010 * 201.73796 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5244 2.0938 1.1888 5 8 1.3020 3.2764 1.0794 6 8 1.3386 1.4824 2.3691 7 6 3.5496 1.2066 0.0156 8 6 4.0090 1.8939 -1.2882 9 7 2.8370 1.7962 -2.1959 10 6 2.9125 2.8027 -3.2633 11 6 4.0445 2.4404 -4.2267 12 1 4.9742 2.3278 -3.6689 13 6 3.7240 1.1748 -4.9067 14 7 3.4766 0.1981 -5.4315 15 6 4.2048 3.5515 -5.2662 16 6 5.3970 3.2548 -6.1389 17 1 5.9817 2.3627 -5.9694 18 6 5.7413 4.1222 -7.1539 19 7 5.0296 5.2088 -7.3600 20 14 7.2187 3.7541 -8.2361 21 1 7.8460 2.4805 -7.8008 22 1 6.7790 3.6323 -9.6493 23 1 8.2057 4.8573 -8.1182 24 6 1.6691 2.0442 -1.3119 25 1 -0.3632 0.4424 -0.9276 26 1 -0.3633 -1.0245 0.0807 27 1 -0.3634 0.5822 0.8468 28 1 1.0255 2.0294 3.1025 29 1 3.8618 0.1622 0.0237 30 1 3.9553 1.7287 0.8821 31 1 4.8642 1.3689 -1.7138 32 1 4.2594 2.9382 -1.1016 33 1 3.1069 3.7820 -2.8262 34 1 1.9676 2.8280 -3.8061 35 1 3.3074 3.6045 -5.8826 36 1 4.3541 4.5047 -4.7590 37 1 5.2716 5.8189 -8.0742 38 1 1.5520 3.1121 -1.1274 39 1 0.7625 1.6324 -1.7554 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599076975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:11 Heat of formation + Delta-G solvation = -102.874611 kcal Electronic energy + Delta-G solvation = -22428.236197 eV Core-core repulsion = 18950.274915 eV Total energy + Delta-G solvation = -3477.961282 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31065 -39.10445 -37.50671 -36.57684 -35.83871 -33.79241 -32.50084 -30.65437 -28.98830 -27.25048 -26.47161 -24.37757 -23.20078 -21.80679 -21.18025 -20.37591 -18.74473 -17.81294 -17.01729 -16.46809 -16.29266 -15.79171 -15.67559 -14.98804 -14.79909 -14.56615 -14.24807 -13.93884 -13.44028 -13.24692 -12.78932 -12.61701 -12.30988 -12.18019 -12.03511 -11.93845 -11.85838 -11.61726 -11.55139 -11.27494 -11.15971 -11.04200 -10.81302 -10.67163 -10.52178 -10.19166 -10.01171 -9.54457 -9.21846 -8.50615 -8.44631 -6.09966 -4.13031 1.69321 2.46456 3.28565 3.28596 3.36955 3.41581 3.73949 3.83825 3.96946 4.15269 4.27532 4.41783 4.73598 4.88941 4.96224 5.00270 5.04848 5.14971 5.28228 5.28983 5.37560 5.41681 5.53389 5.60525 5.64802 5.79206 5.91853 5.95388 6.05497 6.30977 6.44001 6.61815 6.80469 6.97577 7.41790 7.47214 7.51987 7.85497 8.22585 8.59818 8.91993 9.52586 11.00999 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.031630 B = 0.003598 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.025371 B = 7779.622534 C = 8077.963973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.345 6.345 3 C 0.127 3.873 4 C 0.463 3.537 5 O -0.503 6.503 6 O -0.504 6.504 7 C -0.105 4.105 8 C 0.028 3.972 9 N -0.502 5.502 10 C 0.050 3.950 11 C 0.014 3.986 12 H 0.100 0.900 13 C 0.255 3.745 14 N -0.477 5.477 15 C 0.030 3.970 16 C -0.525 4.525 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.015 3.985 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.041 0.959 28 H 0.407 0.593 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.026 0.974 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.077 0.923 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.585 -4.881 20.223 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.263 6.263 3 C 0.085 3.915 4 C 0.303 3.697 5 O -0.390 6.390 6 O -0.315 6.315 7 C -0.143 4.143 8 C -0.100 4.100 9 N -0.226 5.226 10 C -0.079 4.079 11 C -0.008 4.008 12 H 0.118 0.882 13 C -0.062 4.062 14 N -0.154 5.154 15 C -0.008 4.008 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.114 4.114 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.060 0.940 28 H 0.266 0.734 29 H 0.122 0.878 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.814 -6.810 18.682 21.365 hybrid contribution 0.446 1.723 0.414 1.827 sum -7.368 -5.087 19.096 21.091 Atomic orbital electron populations 1.22945 0.80745 1.03650 1.00247 1.88117 1.20015 1.23928 1.94191 1.22182 0.96545 0.83717 0.89049 1.24281 0.73717 0.87003 0.84661 1.90749 1.46630 1.17013 1.84593 1.84655 1.79121 1.46826 1.20932 1.22380 0.88766 1.04343 0.98776 1.23266 0.95422 1.00101 0.91212 1.65525 1.01137 1.47107 1.08846 1.22470 1.00187 0.92997 0.92219 1.19176 0.97608 0.88233 0.95821 0.88187 1.28818 0.91991 0.93534 0.91881 1.80983 1.10089 1.13057 1.11253 1.19191 0.98179 0.91332 0.92118 1.21173 1.12229 1.07784 1.15141 0.92396 1.24956 0.96804 0.94956 0.97261 1.69949 1.39254 1.12019 1.31810 0.86536 0.82670 0.78388 0.80501 1.19635 1.20968 1.20875 1.23661 0.96828 1.00224 0.90639 0.93096 0.88596 0.94033 0.73396 0.87826 0.89910 0.88448 0.92389 0.92142 0.89885 0.95516 0.94416 0.92851 0.90487 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.40 101.05 1.05 1.23 16 2 O -0.34 -4.01 10.18 -47.10 -0.48 -4.49 16 3 C 0.13 1.42 1.06 -90.39 -0.10 1.33 16 4 C 0.46 4.88 5.73 36.00 0.21 5.09 16 5 O -0.50 -6.47 16.30 -18.75 -0.31 -6.78 16 6 O -0.50 -3.99 12.60 -43.94 -0.55 -4.55 16 7 C -0.10 -1.07 6.44 -25.35 -0.16 -1.24 16 8 C 0.03 0.32 5.74 -2.18 -0.01 0.31 16 9 N -0.50 -6.86 5.07 -229.97 -1.17 -8.02 16 10 C 0.05 0.75 4.17 -3.82 -0.02 0.73 16 11 C 0.01 0.25 2.22 -93.41 -0.21 0.04 16 12 H 0.10 1.70 7.05 -51.93 -0.37 1.33 16 13 C 0.25 5.33 13.67 -20.76 -0.28 5.05 16 14 N -0.48 -10.88 18.54 42.15 0.78 -10.10 16 15 C 0.03 0.70 4.42 -27.88 -0.12 0.57 16 16 C -0.53 -13.90 8.60 -34.44 -0.30 -14.19 16 17 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 18 C 0.06 1.71 5.46 -17.81 -0.10 1.61 16 19 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 20 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.01 0.18 5.51 -2.18 -0.01 0.17 16 25 H 0.05 0.44 6.45 -51.93 -0.33 0.11 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.34 6.53 -51.93 -0.34 0.00 16 28 H 0.41 1.38 9.10 45.56 0.41 1.79 16 29 H 0.10 1.05 7.98 -51.92 -0.41 0.63 16 30 H 0.08 0.71 7.71 -51.93 -0.40 0.31 16 31 H 0.10 1.11 7.64 -51.93 -0.40 0.71 16 32 H 0.06 0.63 7.82 -51.93 -0.41 0.23 16 33 H 0.06 0.83 7.88 -51.93 -0.41 0.42 16 34 H 0.08 1.25 8.13 -51.93 -0.42 0.82 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.08 0.96 6.66 -51.93 -0.35 0.61 16 39 H 0.10 1.12 6.18 -51.93 -0.32 0.80 16 LS Contribution 329.72 15.07 4.97 4.97 Total: -1.00 -33.13 329.72 -5.63 -38.77 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -4.54 Total: -2.00 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.05 Total: 0.70 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.35 Total: -42.84 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -1.34 Total: -15.81 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.13 -5.63 -38.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599076975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.109 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds