Wall clock time and date at job start Tue Mar 31 2020 05:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.50388 * 2 1 4 4 C 1.53092 * 109.50962 * 239.91272 * 2 1 3 5 5 N 1.47116 * 109.20709 * 296.87172 * 4 2 1 6 6 C 1.46898 * 110.98479 * 177.62616 * 5 4 2 7 7 C 1.52998 * 109.46964 * 189.73245 * 6 5 4 8 8 H 1.09000 * 109.47423 * 303.85463 * 7 6 5 9 9 C 1.47200 * 109.47301 * 63.85314 * 7 6 5 10 10 N 5.47563 * 59.89109 * 213.74932 * 2 1 3 11 11 C 1.52997 * 109.47227 * 183.85263 * 7 6 5 12 12 C 1.50703 * 109.47069 * 174.99869 * 11 7 6 13 13 H 1.07995 * 120.00355 * 359.97438 * 12 11 7 14 14 C 1.37878 * 119.99980 * 180.02562 * 12 11 7 15 15 N 1.31512 * 120.00023 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00136 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47031 * 59.99518 * 16 14 12 18 18 H 1.48497 * 109.47261 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46991 * 299.99681 * 16 14 12 20 20 C 1.47012 * 110.77422 * 301.40883 * 5 4 2 21 21 C 1.53103 * 109.25887 * 58.61294 * 20 5 4 22 22 H 1.09005 * 109.53686 * 63.10702 * 21 20 5 23 23 C 1.50695 * 109.50813 * 183.21641 * 21 20 5 24 24 O 1.20824 * 120.00023 * 114.78681 * 23 21 20 25 25 O 1.34238 * 119.99925 * 294.78724 * 23 21 20 26 26 O 1.43008 * 109.26158 * 303.15654 * 21 20 5 27 27 H 1.08996 * 109.47119 * 300.00158 * 1 2 3 28 28 H 1.08999 * 109.46913 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47023 * 60.00178 * 1 2 3 30 30 H 1.09000 * 109.50970 * 56.84298 * 4 2 1 31 31 H 1.08994 * 109.51212 * 176.97949 * 4 2 1 32 32 H 1.09003 * 109.47318 * 309.73227 * 6 5 4 33 33 H 1.09000 * 109.47149 * 69.73177 * 6 5 4 34 34 H 1.09002 * 109.47441 * 294.99931 * 11 7 6 35 35 H 1.09001 * 109.47059 * 55.00189 * 11 7 6 36 36 H 0.96998 * 120.00399 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.50729 * 298.68362 * 20 5 4 38 38 H 1.08990 * 109.50682 * 178.55106 * 20 5 4 39 39 H 0.96700 * 116.99606 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2486 5 7 1.6111 -2.1295 -1.2035 6 6 2.0337 -2.8480 -2.4131 7 6 1.3687 -4.2255 -2.4465 8 1 1.6095 -4.7676 -1.5320 9 6 -0.0906 -4.0636 -2.5510 10 7 -1.2168 -3.9386 -2.6316 11 6 1.8825 -5.0107 -3.6549 12 6 1.3226 -6.4094 -3.6202 13 1 0.6663 -6.7086 -2.8164 14 6 1.6490 -7.3076 -4.6141 15 7 2.4486 -6.9435 -5.5927 16 14 0.9544 -9.0411 -4.5714 17 1 -0.5287 -8.9813 -4.6148 18 1 1.4532 -9.8032 -5.7442 19 1 1.3863 -9.7167 -3.3214 20 6 2.1186 -2.7916 0.0070 21 6 1.6067 -2.0463 1.2425 22 1 0.5189 -2.1058 1.2794 23 6 2.1873 -2.6724 2.4843 24 8 2.9466 -2.0412 3.1806 25 8 1.8608 -3.9313 2.8168 26 8 2.0076 -0.6757 1.1665 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.6332 -0.2453 -2.1391 31 1 3.1299 -0.6768 -1.2762 32 1 1.7377 -2.2802 -3.2952 33 1 3.1171 -2.9676 -2.4047 34 1 1.5648 -4.5149 -4.5722 35 1 2.9712 -5.0543 -3.6238 36 1 2.6779 -7.5752 -6.2921 37 1 3.2086 -2.7780 -0.0005 38 1 1.7671 -3.8229 0.0323 39 1 2.2587 -4.2898 3.6219 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599866098.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:16 Heat of formation + Delta-G solvation = -107.785660 kcal Electronic energy + Delta-G solvation = -22648.132972 eV Core-core repulsion = 19169.958731 eV Total energy + Delta-G solvation = -3478.174241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.90335 -39.55862 -37.25812 -36.26735 -35.24909 -33.60338 -32.77115 -31.72481 -29.62604 -27.25614 -25.76054 -24.77026 -22.73958 -21.84143 -21.69545 -19.70710 -18.41135 -17.49560 -16.96017 -16.53360 -16.29071 -16.04065 -15.61542 -14.92039 -14.79344 -14.69489 -14.35772 -13.97596 -13.56165 -13.28936 -12.89452 -12.41021 -12.36083 -12.12652 -12.01666 -11.95342 -11.72551 -11.64447 -11.48061 -11.29227 -11.08665 -11.01207 -10.68165 -10.60901 -10.39560 -10.22445 -9.94127 -9.57509 -9.27005 -8.49958 -8.43816 -6.13050 -4.16576 1.94569 2.35854 3.28978 3.33573 3.36866 3.53642 3.67754 3.78029 3.96961 4.38214 4.49468 4.64252 4.76674 4.78246 4.85946 4.92849 5.12902 5.17588 5.25217 5.38367 5.46084 5.48785 5.60777 5.67092 5.71642 5.80731 5.90451 6.15043 6.25443 6.26180 6.39371 6.76153 6.87798 6.88314 7.36878 7.46740 7.69278 7.81590 8.18504 8.52287 8.87775 9.49240 10.97761 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.004391 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.248121 B = 6374.456215 C = 7008.945694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.093 3.907 3 H 0.113 0.887 4 C 0.020 3.980 5 N -0.534 5.534 6 C 0.063 3.937 7 C 0.009 3.991 8 H 0.100 0.900 9 C 0.255 3.745 10 N -0.476 5.476 11 C 0.032 3.968 12 C -0.528 4.528 13 H 0.057 0.943 14 C 0.064 3.936 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.026 3.974 21 C 0.102 3.898 22 H 0.109 0.891 23 C 0.489 3.511 24 O -0.497 6.497 25 O -0.507 6.507 26 O -0.358 6.358 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.027 0.973 35 H 0.037 0.963 36 H 0.263 0.737 37 H 0.053 0.947 38 H 0.107 0.893 39 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.574 11.548 12.369 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.036 3.964 3 H 0.130 0.870 4 C -0.108 4.108 5 N -0.259 5.259 6 C -0.065 4.065 7 C -0.013 4.013 8 H 0.118 0.882 9 C -0.062 4.062 10 N -0.153 5.153 11 C -0.007 4.007 12 C -0.566 4.566 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.102 4.102 21 C 0.043 3.957 22 H 0.126 0.874 23 C 0.329 3.671 24 O -0.383 6.383 25 O -0.320 6.320 26 O -0.277 6.277 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.125 0.875 39 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -0.398 12.100 12.075 17.099 hybrid contribution 1.086 -1.416 0.217 1.798 sum 0.687 10.684 12.292 16.301 Atomic orbital electron populations 1.22327 0.95140 1.03879 1.02337 1.22407 0.94684 0.95830 0.83513 0.86950 1.22854 0.99104 0.89552 0.99325 1.62274 1.59682 1.01784 1.02193 1.22296 0.98535 0.94132 0.91564 1.19257 0.82136 0.95440 1.04452 0.88205 1.28802 0.94754 0.91122 0.91532 1.80992 1.13193 1.10647 1.10486 1.19168 0.97197 0.94137 0.90165 1.21082 1.29636 0.96257 1.09596 0.92520 1.24942 0.94881 0.98797 0.95245 1.69920 1.35148 1.35682 1.12251 0.86652 0.79566 0.84269 0.77589 1.20200 1.21191 1.20033 1.22721 0.98921 0.99791 0.88788 1.21336 1.00415 0.83858 0.90105 0.87405 1.22793 0.78512 0.79644 0.86163 1.90736 1.33037 1.62621 1.51900 1.84513 1.69505 1.29613 1.48359 1.88080 1.75474 1.20429 1.43691 0.92300 0.90758 0.91205 0.88957 0.93342 0.89596 0.92379 0.95507 0.94449 0.92706 0.92856 0.87506 0.72523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 8.89 37.16 0.33 -1.41 16 2 C 0.09 0.92 3.92 -26.68 -0.10 0.82 16 3 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 4 C 0.02 0.20 5.07 -3.66 -0.02 0.18 16 5 N -0.53 -6.50 3.77 -234.23 -0.88 -7.38 16 6 C 0.06 0.85 4.33 -3.83 -0.02 0.84 16 7 C 0.01 0.16 2.12 -93.41 -0.20 -0.04 16 8 H 0.10 1.61 6.34 -51.93 -0.33 1.29 16 9 C 0.25 5.02 13.64 -20.76 -0.28 4.74 16 10 N -0.48 -10.26 18.54 42.15 0.78 -9.48 16 11 C 0.03 0.71 4.42 -27.88 -0.12 0.58 16 12 C -0.53 -13.64 8.60 -34.44 -0.30 -13.94 16 13 H 0.06 1.46 7.59 -52.49 -0.40 1.06 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 16 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 C 0.03 0.31 4.70 -3.71 -0.02 0.29 16 21 C 0.10 1.19 2.93 -27.83 -0.08 1.11 16 22 H 0.11 1.19 6.49 -51.93 -0.34 0.86 16 23 C 0.49 5.82 7.66 36.00 0.28 6.09 16 24 O -0.50 -7.43 17.27 -25.45 -0.44 -7.87 16 25 O -0.51 -4.62 13.42 -39.28 -0.53 -5.15 16 26 O -0.36 -4.46 9.82 -55.11 -0.54 -5.01 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.85 6.12 -51.93 -0.32 0.53 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.15 8.04 -51.93 -0.42 0.74 16 33 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.11 1.26 6.30 -51.93 -0.33 0.94 16 39 H 0.42 1.92 9.10 45.56 0.41 2.33 16 LS Contribution 330.20 15.07 4.98 4.98 Total: -1.00 -32.61 330.20 -6.20 -38.81 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.65 Total: -1.39 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -0.63 Total: 0.88 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.64 Total: -41.14 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -1.51 Total: -18.02 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.61 -6.20 -38.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599866098.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.976 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds