Wall clock time and date at job start Tue Mar 31 2020 05:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35366 * 117.00335 * 2 1 4 4 C 1.36095 * 125.57939 * 180.02562 * 3 2 1 5 5 C 1.39911 * 107.17465 * 179.97438 * 4 3 2 6 6 C 1.37827 * 106.67946 * 359.97438 * 5 4 3 7 7 C 1.46133 * 126.03284 * 179.97438 * 6 5 4 8 8 O 1.21770 * 119.99747 * 353.22817 * 7 6 5 9 9 N 1.34775 * 119.99815 * 173.22872 * 7 6 5 10 10 C 1.46493 * 120.00192 * 3.35792 * 9 7 6 11 11 C 1.46506 * 119.99612 * 183.35509 * 9 7 6 12 12 C 1.53005 * 109.46515 * 90.00005 * 11 9 7 13 13 C 1.53006 * 109.46578 * 179.97438 * 12 11 9 14 14 N 1.46500 * 109.46859 * 180.02562 * 13 12 11 15 15 C 1.36938 * 119.99995 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99760 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00100 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99812 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00254 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46745 * 89.99868 * 19 17 15 21 21 H 1.48496 * 109.47646 * 210.00020 * 19 17 15 22 22 H 1.48503 * 109.46838 * 330.00607 * 19 17 15 23 23 O 1.34012 * 125.57928 * 359.97438 * 3 2 1 24 24 H 1.08993 * 109.46954 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46679 * 300.00457 * 1 2 3 26 26 H 1.08997 * 109.46719 * 59.99824 * 1 2 3 27 27 H 1.07997 * 126.41447 * 0.26129 * 4 3 2 28 28 H 1.07999 * 126.66251 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47356 * 84.01441 * 10 9 7 30 30 H 1.09003 * 109.47167 * 204.01570 * 10 9 7 31 31 H 1.09003 * 109.47350 * 324.01132 * 10 9 7 32 32 H 1.08997 * 109.47193 * 209.99470 * 11 9 7 33 33 H 1.08997 * 109.47549 * 330.00397 * 11 9 7 34 34 H 1.09000 * 109.47456 * 299.99694 * 12 11 9 35 35 H 1.09002 * 109.47351 * 59.99988 * 12 11 9 36 36 H 1.09000 * 109.47168 * 300.00105 * 13 12 11 37 37 H 1.08997 * 109.47326 * 60.00489 * 13 12 11 38 38 H 0.97004 * 120.00324 * 0.02562 * 14 13 12 39 39 H 0.97004 * 119.99564 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2061 0.0000 4 6 3.3894 1.4090 -0.0005 5 6 3.5986 2.7924 -0.0009 6 6 2.3523 3.3809 -0.0012 7 6 2.0796 4.8166 -0.0012 8 8 2.9948 5.6101 0.1236 9 7 0.8152 5.2623 -0.1391 10 6 -0.2937 4.3081 -0.2152 11 6 0.5498 6.7013 -0.2129 12 6 0.5971 7.1542 -1.6736 13 6 0.3193 8.6568 -1.7508 14 7 0.3640 9.0905 -3.1494 15 6 0.1442 10.4045 -3.4662 16 1 -0.0625 11.1210 -2.6850 17 6 0.1871 10.8155 -4.7914 18 7 0.4395 9.9423 -5.7433 19 14 -0.1134 12.6077 -5.2237 20 1 1.1771 13.3424 -5.2132 21 1 -0.7222 12.6957 -6.5752 22 1 -1.0339 13.2099 -4.2259 23 8 1.4266 2.3957 -0.0005 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 4.1529 0.6453 -0.0049 28 1 4.5516 3.3005 -0.0009 29 1 -0.5985 4.0241 0.7920 30 1 -1.1349 4.7691 -0.7329 31 1 0.0271 3.4210 -0.7615 32 1 -0.4368 6.9104 0.2005 33 1 1.3052 7.2399 0.3591 34 1 1.5837 6.9451 -2.0871 35 1 -0.1583 6.6155 -2.2458 36 1 -0.6675 8.8656 -1.3374 37 1 1.0744 9.1958 -1.1786 38 1 0.5493 8.4469 -3.8511 39 1 0.4691 10.2295 -6.6694 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699541639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:52 Heat of formation + Delta-G solvation = -37.924473 kcal Electronic energy + Delta-G solvation = -21660.484158 eV Core-core repulsion = 18185.339325 eV Total energy + Delta-G solvation = -3475.144833 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.05055 -39.77804 -38.81371 -36.28419 -34.85767 -33.46058 -32.30066 -30.33840 -29.40132 -27.66737 -26.99815 -25.33321 -23.29015 -22.29879 -21.95144 -20.91706 -20.00937 -18.86248 -17.57185 -17.40595 -17.01317 -16.35713 -15.72991 -15.68656 -14.87976 -14.76259 -14.48445 -14.01763 -13.62184 -13.46348 -13.33606 -13.26714 -13.13472 -12.92446 -12.62272 -12.29033 -12.03296 -11.91849 -11.77111 -10.92193 -10.82773 -10.75244 -10.39717 -10.28408 -10.25294 -10.02385 -9.69063 -8.83421 -8.80610 -8.32125 -6.88197 -5.72525 -3.01268 0.84366 1.89518 2.10070 2.69741 2.97712 3.10481 3.46660 3.51242 3.53129 4.36135 4.55231 4.57973 4.62967 4.63128 4.91434 4.97755 5.13776 5.18663 5.21895 5.36791 5.43227 5.55742 5.59532 5.60122 5.69563 5.88888 6.03548 6.06101 6.18179 6.31752 6.40723 6.50745 6.78724 6.88258 6.90394 7.21464 7.73486 7.97402 8.46419 9.57189 10.15817 10.50384 11.50592 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.031127 B = 0.002811 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.336794 B = 9958.711923 C =10099.495030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.263 6.263 3 C 0.203 3.797 4 C -0.239 4.239 5 C -0.083 4.083 6 C -0.096 4.096 7 C 0.602 3.398 8 O -0.515 6.515 9 N -0.607 5.607 10 C 0.076 3.924 11 C 0.119 3.881 12 C -0.140 4.140 13 C 0.157 3.843 14 N -0.734 5.734 15 C -0.238 4.238 16 H 0.071 0.929 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.282 1.282 23 O -0.183 6.183 24 H 0.110 0.890 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.162 0.838 28 H 0.168 0.832 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.019 0.981 37 H 0.021 0.979 38 H 0.383 0.617 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -22.561 14.736 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.177 6.177 3 C 0.107 3.893 4 C -0.259 4.259 5 C -0.103 4.103 6 C -0.146 4.146 7 C 0.391 3.609 8 O -0.393 6.393 9 N -0.339 5.339 10 C -0.067 4.067 11 C -0.003 4.003 12 C -0.179 4.179 13 C 0.029 3.971 14 N -0.378 5.378 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.212 4.212 18 N -0.583 5.583 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 O -0.084 6.084 24 H 0.128 0.872 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.180 0.820 28 H 0.185 0.815 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.036 0.964 37 H 0.039 0.961 38 H 0.217 0.783 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.682 -22.074 14.823 26.598 hybrid contribution -0.407 0.557 -0.646 0.945 sum -1.090 -21.518 14.178 25.792 Atomic orbital electron populations 1.23187 0.76627 1.05011 1.02720 1.86405 1.23130 1.18985 1.89204 1.20933 0.89758 0.78587 1.00012 1.20781 0.92120 0.96892 1.16102 1.22003 0.97898 0.92520 0.97923 1.21992 0.86966 0.87335 1.18278 1.16477 0.83194 0.83986 0.77277 1.90929 1.43975 1.53780 1.50636 1.47765 1.06061 1.08138 1.71904 1.21978 0.89825 0.93008 1.01901 1.21590 1.02320 0.78171 0.98224 1.22084 1.02612 0.98065 0.95156 1.20538 0.97575 0.90594 0.88439 1.42358 1.86024 1.07942 1.01464 1.19250 1.40159 0.85655 0.91903 0.91127 1.24759 1.02850 0.97835 0.95733 1.69672 1.56267 1.32914 0.99480 0.86165 0.77748 0.84736 0.77409 1.21691 1.21789 1.20761 1.84234 1.37105 1.14082 1.72955 0.87175 0.91794 0.91680 0.82005 0.81470 0.92536 0.90112 0.90481 0.90113 0.89309 0.91465 0.91921 0.96356 0.96086 0.78313 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 10.74 101.05 1.09 1.18 16 2 O -0.26 -2.20 10.55 -41.02 -0.43 -2.63 16 3 C 0.20 2.02 7.86 29.96 0.24 2.26 16 4 C -0.24 -2.34 10.89 -39.73 -0.43 -2.77 16 5 C -0.08 -0.93 10.67 -39.11 -0.42 -1.35 16 6 C -0.10 -1.21 6.79 -36.57 -0.25 -1.45 16 7 C 0.60 8.94 7.63 -13.09 -0.10 8.84 16 8 O -0.52 -9.29 16.44 5.13 0.08 -9.20 16 9 N -0.61 -7.94 2.87 -183.32 -0.53 -8.46 16 10 C 0.08 0.72 9.62 59.84 0.58 1.30 16 11 C 0.12 1.66 5.41 -4.04 -0.02 1.64 16 12 C -0.14 -2.42 5.65 -26.73 -0.15 -2.57 16 13 C 0.16 3.28 6.26 -4.04 -0.03 3.25 16 14 N -0.73 -19.54 5.60 -59.91 -0.34 -19.87 16 15 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 16 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 17 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 18 N -0.93 -29.09 13.06 55.49 0.72 -28.37 16 19 Si 0.91 22.92 29.55 -169.99 -5.02 17.89 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 O -0.18 -1.95 6.76 -19.26 -0.13 -2.08 16 24 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.69 8.03 -51.93 -0.42 0.27 16 31 H 0.08 0.72 5.40 -51.93 -0.28 0.44 16 32 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.09 1.33 7.38 -51.93 -0.38 0.95 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.38 10.73 7.67 -40.82 -0.31 10.42 16 39 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 337.09 15.07 5.08 5.08 Total: -1.00 -34.79 337.09 -5.89 -40.68 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.59 Total: 4.29 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 0.25 Total: 2.67 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.14 Total: -56.70 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.48 Total: -13.91 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.79 -5.89 -40.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699541639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.754 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds