Wall clock time and date at job start Tue Mar 31 2020 05:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00162 * 2 1 4 4 C 1.50693 * 109.47539 * 180.02562 * 3 2 1 5 5 C 1.35132 * 125.61877 * 89.99201 * 4 3 2 6 6 C 1.40367 * 107.11389 * 180.02562 * 5 4 3 7 7 C 1.36543 * 106.71117 * 0.02562 * 6 5 4 8 8 C 1.46659 * 125.99049 * 179.97438 * 7 6 5 9 9 O 1.21695 * 119.99844 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99947 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99875 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47295 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.47289 * 294.99658 * 12 11 10 14 14 C 1.53005 * 109.47452 * 174.99734 * 12 11 10 15 15 N 1.46506 * 109.47289 * 54.99786 * 12 11 10 16 16 C 1.36934 * 120.00113 * 205.00330 * 15 12 11 17 17 H 1.07995 * 120.00266 * 359.97438 * 16 15 12 18 18 C 1.38815 * 119.99987 * 180.02562 * 16 15 12 19 19 N 1.31616 * 119.99762 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00156 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47021 * 89.99677 * 20 18 16 22 22 H 1.48497 * 109.47136 * 209.99659 * 20 18 16 23 23 H 1.48504 * 109.46633 * 329.99604 * 20 18 16 24 24 O 1.33937 * 125.61256 * 270.32501 * 4 3 2 25 25 H 1.08996 * 109.46673 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46970 * 300.00463 * 1 2 3 27 27 H 1.09002 * 109.47104 * 60.00258 * 1 2 3 28 28 H 1.09004 * 109.47518 * 59.99590 * 3 2 1 29 29 H 1.09005 * 109.46851 * 300.00076 * 3 2 1 30 30 H 1.07996 * 126.44086 * 0.04115 * 5 4 3 31 31 H 1.08004 * 126.64412 * 180.02562 * 6 5 4 32 32 H 0.96999 * 120.00413 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.47485 * 59.99811 * 11 10 8 34 34 H 1.09008 * 109.47071 * 299.99783 * 11 10 8 35 35 H 1.09002 * 109.46935 * 59.99874 * 14 12 11 36 36 H 1.08992 * 109.47061 * 179.97438 * 14 12 11 37 37 H 1.09001 * 109.46812 * 300.00216 * 14 12 11 38 38 H 0.97006 * 119.99584 * 25.00028 * 15 12 11 39 39 H 0.97000 * 120.00217 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2966 1.1244 -1.0995 6 6 5.6237 1.0188 -0.6545 7 6 5.5816 1.0212 0.7103 8 6 6.7373 0.9283 1.6083 9 8 7.8601 0.8385 1.1477 10 7 6.5558 0.9413 2.9437 11 6 7.7103 0.8490 3.8408 12 6 7.2317 0.8861 5.2935 13 1 6.7807 1.8561 5.5028 14 6 8.4223 0.6648 6.2286 15 7 6.2395 -0.1703 5.5079 16 6 5.3106 -0.0448 6.5062 17 1 5.3097 0.8326 7.1358 18 6 4.3708 -1.0459 6.7097 19 7 4.3722 -2.1155 5.9427 20 14 3.1042 -0.8752 8.0720 21 1 1.8966 -0.1923 7.5423 22 1 2.7313 -2.2224 8.5729 23 1 3.6779 -0.0750 9.1837 24 8 4.2900 1.1186 1.0879 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6887 1.8465 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.9646 1.1514 -2.1268 31 1 6.5070 0.9491 -1.2721 32 1 5.6608 1.0125 3.3109 33 1 8.3806 1.6889 3.6579 34 1 8.2402 -0.0855 3.6561 35 1 9.1606 1.4507 6.0691 36 1 8.0814 0.6916 7.2635 37 1 8.8733 -0.3052 6.0193 38 1 6.2405 -0.9585 4.9425 39 1 3.7153 -2.8150 6.0845 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752887217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:27 Heat of formation + Delta-G solvation = -54.872046 kcal Electronic energy + Delta-G solvation = -21924.163413 eV Core-core repulsion = 18448.283678 eV Total energy + Delta-G solvation = -3475.879735 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.66274 -39.19642 -38.00262 -36.34718 -33.72910 -33.03683 -31.92270 -31.20213 -28.78917 -27.71579 -26.24062 -25.14900 -23.66154 -22.05532 -21.55580 -20.21420 -19.94087 -18.16207 -17.25499 -16.96865 -16.29763 -15.98592 -15.90527 -15.66357 -15.08972 -14.49748 -14.19573 -13.86541 -13.71239 -13.21044 -12.99971 -12.92792 -12.84799 -12.27549 -12.12976 -12.04756 -11.99874 -11.63980 -11.38483 -10.87551 -10.76687 -10.37001 -10.10296 -10.02015 -10.00186 -9.94492 -9.71674 -8.98778 -8.86080 -8.49591 -7.04022 -5.80038 -3.10842 1.06521 2.22133 2.62272 3.37540 3.40313 3.45734 3.47600 3.48459 3.83166 4.54209 4.55586 4.83672 4.86765 4.98376 5.10510 5.11622 5.21901 5.42343 5.47637 5.50051 5.56642 5.63368 5.77425 5.85699 5.92237 6.06216 6.16979 6.28396 6.33580 6.54731 6.68013 6.76815 6.82463 6.91239 7.03368 7.66407 7.83291 8.35702 8.37791 9.48643 10.03140 10.38601 11.41783 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.005546 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.879135 B = 5047.183863 C = 7249.677762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.140 3.860 4 C 0.009 3.991 5 C -0.196 4.196 6 C -0.132 4.132 7 C -0.055 4.055 8 C 0.597 3.403 9 O -0.534 6.534 10 N -0.697 5.697 11 C 0.113 3.887 12 C 0.159 3.841 13 H 0.054 0.946 14 C -0.162 4.162 15 N -0.724 5.724 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.009 4.009 19 N -0.928 5.928 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 O -0.148 6.148 25 H 0.091 0.909 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.161 0.839 32 H 0.416 0.584 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.386 0.614 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 8.700 -13.192 16.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.063 3.937 4 C -0.044 4.044 5 C -0.215 4.215 6 C -0.153 4.153 7 C -0.108 4.108 8 C 0.382 3.618 9 O -0.414 6.414 10 N -0.348 5.348 11 C -0.011 4.011 12 C 0.049 3.951 13 H 0.072 0.928 14 C -0.223 4.223 15 N -0.367 5.367 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.206 4.206 19 N -0.575 5.575 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 O -0.042 6.042 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.174 0.826 31 H 0.179 0.821 32 H 0.253 0.747 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.220 0.780 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.959 8.515 -13.005 15.823 hybrid contribution -1.333 -0.131 0.636 1.482 sum -4.291 8.384 -12.368 15.546 Atomic orbital electron populations 1.22807 0.80070 1.03422 1.00177 1.88024 1.20264 1.26374 1.95475 1.20718 0.84245 0.86147 1.02542 1.22207 0.92820 1.04942 0.84435 1.21564 0.92443 1.07959 0.99533 1.21895 0.98439 1.02025 0.92922 1.22279 0.82180 1.11570 0.94749 1.16560 0.85752 0.77561 0.81922 1.90841 1.22169 1.51955 1.76408 1.45941 1.12499 1.71551 1.04780 1.21811 0.87443 1.01850 0.90014 1.20518 0.90667 0.93954 0.89990 0.92787 1.22358 0.98238 1.00350 1.01314 1.42482 1.33896 1.20787 1.39509 1.19202 1.06766 1.03179 1.08425 0.91104 1.24753 0.99664 0.96761 0.99423 1.69664 1.37841 1.09303 1.40730 0.86217 0.81696 0.76741 0.81651 1.21749 1.21795 1.20774 1.84090 1.16233 1.69378 1.34546 0.89096 0.93504 0.93853 0.90915 0.89743 0.82622 0.82123 0.74653 0.91348 0.91339 0.94140 0.92250 0.93133 0.78038 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.94 10.69 -35.23 -0.38 -5.31 16 3 C 0.14 1.51 6.46 36.00 0.23 1.75 16 4 C 0.01 0.12 6.94 -35.42 -0.25 -0.13 16 5 C -0.20 -2.44 10.77 -39.89 -0.43 -2.87 16 6 C -0.13 -1.89 10.62 -39.39 -0.42 -2.31 16 7 C -0.05 -0.92 7.13 -36.80 -0.26 -1.18 16 8 C 0.60 10.91 7.79 -12.86 -0.10 10.81 16 9 O -0.53 -10.67 16.86 5.19 0.09 -10.59 16 10 N -0.70 -12.62 5.38 -61.63 -0.33 -12.95 16 11 C 0.11 1.97 5.23 -4.04 -0.02 1.95 16 12 C 0.16 3.02 3.05 -67.93 -0.21 2.82 16 13 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 14 C -0.16 -2.81 9.49 37.16 0.35 -2.46 16 15 N -0.72 -17.37 4.56 -53.42 -0.24 -17.61 16 16 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 20 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 O -0.15 -2.47 10.40 4.96 0.05 -2.41 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.16 2.03 8.06 -52.48 -0.42 1.61 16 32 H 0.42 7.90 7.89 -40.82 -0.32 7.57 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.39 10.09 7.80 -40.82 -0.32 9.77 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -32.27 343.20 -5.85 -38.12 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -5.68 Total: 12.80 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -0.23 Total: 2.73 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.15 Total: -57.48 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.24 Total: -18.32 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.27 -5.85 -38.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752887217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.756 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds