Wall clock time and date at job start Tue Mar 31 2020 05:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00162 * 2 1 4 4 C 1.50693 * 109.47539 * 180.02562 * 3 2 1 5 5 C 1.35132 * 125.61877 * 89.99201 * 4 3 2 6 6 C 1.40367 * 107.11389 * 180.02562 * 5 4 3 7 7 C 1.36543 * 106.71117 * 0.02562 * 6 5 4 8 8 C 1.46659 * 125.99049 * 179.97438 * 7 6 5 9 9 O 1.21695 * 119.99844 * 359.97438 * 8 7 6 10 10 N 1.34770 * 119.99947 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99875 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47295 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.47289 * 294.99658 * 12 11 10 14 14 C 1.53005 * 109.47452 * 174.99734 * 12 11 10 15 15 N 1.46506 * 109.47289 * 54.99786 * 12 11 10 16 16 C 1.36934 * 120.00113 * 205.00330 * 15 12 11 17 17 H 1.07995 * 120.00266 * 359.97438 * 16 15 12 18 18 C 1.38815 * 119.99987 * 180.02562 * 16 15 12 19 19 N 1.31616 * 119.99762 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00156 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47021 * 89.99677 * 20 18 16 22 22 H 1.48497 * 109.47136 * 209.99659 * 20 18 16 23 23 H 1.48504 * 109.46633 * 329.99604 * 20 18 16 24 24 O 1.33937 * 125.61256 * 270.32501 * 4 3 2 25 25 H 1.08996 * 109.46673 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46970 * 300.00463 * 1 2 3 27 27 H 1.09002 * 109.47104 * 60.00258 * 1 2 3 28 28 H 1.09004 * 109.47518 * 59.99590 * 3 2 1 29 29 H 1.09005 * 109.46851 * 300.00076 * 3 2 1 30 30 H 1.07996 * 126.44086 * 0.04115 * 5 4 3 31 31 H 1.08004 * 126.64412 * 180.02562 * 6 5 4 32 32 H 0.96999 * 120.00413 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.47485 * 59.99811 * 11 10 8 34 34 H 1.09008 * 109.47071 * 299.99783 * 11 10 8 35 35 H 1.09002 * 109.46935 * 59.99874 * 14 12 11 36 36 H 1.08992 * 109.47061 * 179.97438 * 14 12 11 37 37 H 1.09001 * 109.46812 * 300.00216 * 14 12 11 38 38 H 0.97006 * 119.99584 * 25.00028 * 15 12 11 39 39 H 0.97000 * 120.00217 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2966 1.1244 -1.0995 6 6 5.6237 1.0188 -0.6545 7 6 5.5816 1.0212 0.7103 8 6 6.7373 0.9283 1.6083 9 8 7.8601 0.8385 1.1477 10 7 6.5558 0.9413 2.9437 11 6 7.7103 0.8490 3.8408 12 6 7.2317 0.8861 5.2935 13 1 6.7807 1.8561 5.5028 14 6 8.4223 0.6648 6.2286 15 7 6.2395 -0.1703 5.5079 16 6 5.3106 -0.0448 6.5062 17 1 5.3097 0.8326 7.1358 18 6 4.3708 -1.0459 6.7097 19 7 4.3722 -2.1155 5.9427 20 14 3.1042 -0.8752 8.0720 21 1 1.8966 -0.1923 7.5423 22 1 2.7313 -2.2224 8.5729 23 1 3.6779 -0.0750 9.1837 24 8 4.2900 1.1186 1.0879 25 1 -0.3632 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6887 1.8465 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.9646 1.1514 -2.1268 31 1 6.5070 0.9491 -1.2721 32 1 5.6608 1.0125 3.3109 33 1 8.3806 1.6889 3.6579 34 1 8.2402 -0.0855 3.6561 35 1 9.1606 1.4507 6.0691 36 1 8.0814 0.6916 7.2635 37 1 8.8733 -0.3052 6.0193 38 1 6.2405 -0.9585 4.9425 39 1 3.7153 -2.8150 6.0845 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752887217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:26 Heat of formation + Delta-G solvation = -78.527221 kcal Electronic energy + Delta-G solvation = -21925.189178 eV Core-core repulsion = 18448.283678 eV Total energy + Delta-G solvation = -3476.905500 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.78943 -40.62361 -38.84651 -37.97424 -35.35265 -34.24395 -33.66400 -32.28128 -30.61142 -28.75935 -27.28550 -26.27676 -25.59766 -23.24969 -22.67746 -21.76766 -21.19497 -19.62626 -19.07705 -17.93923 -17.35294 -17.26990 -17.02523 -16.76153 -16.62336 -16.05342 -15.70688 -15.36404 -14.94022 -14.78022 -14.25312 -14.01028 -13.89092 -13.68662 -13.57497 -13.46207 -13.09861 -12.90486 -12.78706 -12.52093 -12.38059 -12.19057 -11.75463 -11.68603 -11.46773 -11.09682 -10.98253 -10.76035 -10.26530 -9.67505 -9.04500 -7.92540 -5.22232 -0.12649 1.16994 1.47932 1.48804 1.53142 1.57249 2.04068 2.17651 2.56553 2.97140 3.41521 3.56954 3.79151 3.87117 3.88897 3.94756 4.18483 4.26062 4.36500 4.49624 4.54045 4.57333 4.60686 4.70619 4.74464 4.79716 4.86926 4.87633 5.06014 5.22455 5.27637 5.34169 5.53911 5.55328 5.80666 6.08432 6.27483 6.39449 6.93412 7.34531 8.06896 8.30941 9.30293 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.005546 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.879135 B = 5047.183863 C = 7249.677762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.137 3.863 4 C -0.001 4.001 5 C -0.187 4.187 6 C -0.120 4.120 7 C -0.095 4.095 8 C 0.596 3.404 9 O -0.558 6.558 10 N -0.701 5.701 11 C 0.120 3.880 12 C 0.158 3.842 13 H 0.060 0.940 14 C -0.153 4.153 15 N -0.734 5.734 16 C -0.236 4.236 17 H 0.079 0.921 18 C -0.073 4.073 19 N -0.968 5.968 20 Si 0.969 3.031 21 H -0.288 1.288 22 H -0.300 1.300 23 H -0.269 1.269 24 O -0.173 6.173 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.127 0.873 30 H 0.195 0.805 31 H 0.176 0.824 32 H 0.411 0.589 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.371 0.629 39 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.241 10.277 -14.112 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C 0.061 3.939 4 C -0.053 4.053 5 C -0.206 4.206 6 C -0.141 4.141 7 C -0.147 4.147 8 C 0.383 3.617 9 O -0.440 6.440 10 N -0.349 5.349 11 C -0.004 4.004 12 C 0.049 3.951 13 H 0.078 0.922 14 C -0.214 4.214 15 N -0.375 5.375 16 C -0.368 4.368 17 H 0.097 0.903 18 C -0.265 4.265 19 N -0.618 5.618 20 Si 0.798 3.202 21 H -0.215 1.215 22 H -0.227 1.227 23 H -0.194 1.194 24 O -0.070 6.070 25 H 0.110 0.890 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.145 0.855 30 H 0.212 0.788 31 H 0.193 0.807 32 H 0.247 0.753 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.203 0.797 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.518 10.146 -13.911 17.574 hybrid contribution -1.154 -0.553 0.841 1.532 sum -4.672 9.593 -13.070 16.872 Atomic orbital electron populations 1.23000 0.78166 1.04112 1.01701 1.87957 1.22457 1.27659 1.95810 1.21031 0.82285 0.85842 1.04726 1.23059 0.94274 1.03756 0.84177 1.21987 0.91099 1.06520 1.00963 1.22257 0.99976 0.99787 0.92064 1.22125 0.82115 1.15100 0.95398 1.16759 0.86136 0.76823 0.81935 1.90807 1.23164 1.53286 1.76737 1.45961 1.12259 1.71667 1.05062 1.21764 0.87477 1.02323 0.88814 1.20719 0.90343 0.92572 0.91434 0.92208 1.22219 0.98042 1.01403 0.99702 1.42636 1.34726 1.21398 1.38758 1.19585 1.06354 1.02732 1.08087 0.90263 1.25510 1.02116 0.96908 1.02005 1.69830 1.38874 1.10260 1.42865 0.85209 0.79386 0.76181 0.79382 1.21544 1.22734 1.19366 1.84061 1.16468 1.70192 1.36231 0.88954 0.93242 0.91018 0.90680 0.85524 0.78822 0.80700 0.75312 0.88993 0.92322 0.90473 0.93575 0.93766 0.79673 0.94267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -10.27 10.69 -148.98 -1.59 -11.86 16 3 C 0.14 2.69 6.46 71.23 0.46 3.15 16 4 C 0.00 -0.02 6.94 24.97 0.17 0.16 16 5 C -0.19 -4.21 10.77 22.07 0.24 -3.98 16 6 C -0.12 -3.30 10.62 22.39 0.24 -3.06 16 7 C -0.10 -3.22 7.13 24.07 0.17 -3.04 16 8 C 0.60 22.17 7.79 86.44 0.67 22.84 16 9 O -0.56 -22.47 16.86 -4.33 -0.07 -22.54 16 10 N -0.70 -25.76 5.38 -467.10 -2.51 -28.28 16 11 C 0.12 4.13 5.23 86.38 0.45 4.58 16 12 C 0.16 5.89 3.05 44.99 0.14 6.03 16 13 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 14 C -0.15 -5.09 9.49 71.98 0.68 -4.41 16 15 N -0.73 -35.53 4.56 -322.93 -1.47 -37.00 16 16 C -0.24 -12.58 9.93 84.03 0.83 -11.75 16 17 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 18 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 19 N -0.97 -59.08 13.06 21.65 0.28 -58.80 16 20 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 24 O -0.17 -5.85 10.40 -5.17 -0.05 -5.91 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 31 H 0.18 4.16 8.06 -2.91 -0.02 4.13 16 32 H 0.41 16.05 7.89 -92.71 -0.73 15.32 16 33 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.37 19.97 7.80 -92.70 -0.72 19.25 16 39 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -70.66 343.20 1.99 -68.67 By element: Atomic # 1 Polarization: 39.98 SS G_CDS: -0.39 Total: 39.59 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 5.78 Total: 8.53 kcal Atomic # 7 Polarization: -120.38 SS G_CDS: -3.71 Total: -124.08 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -1.72 Total: -40.31 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -70.66 1.99 -68.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752887217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.861 kcal (2) G-P(sol) polarization free energy of solvation -70.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds