Wall clock time and date at job start Tue Mar 31 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47450 * 89.99951 * 3 2 1 5 5 H 1.48503 * 109.47360 * 209.99620 * 3 2 1 6 6 H 1.48498 * 109.47360 * 329.99798 * 3 2 1 7 7 C 1.38808 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99929 * 15.17030 * 7 2 1 9 9 N 1.36939 * 120.00203 * 195.17052 * 7 2 1 10 10 C 1.47059 * 136.05734 * 7.45960 * 9 7 2 11 11 C 1.53753 * 87.88943 * 152.96018 * 10 9 7 12 12 C 1.52998 * 114.57481 * 272.66268 * 11 10 9 13 13 N 1.46503 * 109.47469 * 268.66731 * 12 11 10 14 14 C 1.34770 * 120.00240 * 179.97438 * 13 12 11 15 15 O 1.21606 * 120.00135 * 0.02562 * 14 13 12 16 16 C 1.47299 * 119.99948 * 179.97438 * 14 13 12 17 17 F 1.35101 * 120.00205 * 0.02562 * 16 14 13 18 18 C 1.33120 * 120.00120 * 180.02562 * 16 14 13 19 19 C 1.51447 * 126.33874 * 359.70062 * 18 16 14 20 20 C 1.54276 * 106.84993 * 180.23953 * 19 18 16 21 21 C 1.54979 * 103.66366 * 23.47817 * 20 19 18 22 22 C 1.51837 * 126.34223 * 180.02562 * 18 16 14 23 23 C 1.47062 * 136.05593 * 187.82575 * 9 7 2 24 24 H 0.96995 * 120.00365 * 174.90835 * 1 2 3 25 25 H 1.08997 * 113.47135 * 267.69145 * 10 9 7 26 26 H 1.09007 * 113.47198 * 38.13451 * 10 9 7 27 27 H 1.09003 * 114.08984 * 139.78157 * 11 10 9 28 28 H 1.08997 * 109.47473 * 28.66981 * 12 11 10 29 29 H 1.09006 * 109.47064 * 148.67252 * 12 11 10 30 30 H 0.97003 * 119.99365 * 0.02562 * 13 12 11 31 31 H 1.09004 * 109.97878 * 299.72074 * 19 18 16 32 32 H 1.08997 * 109.98826 * 61.01994 * 19 18 16 33 33 H 1.09004 * 110.79075 * 264.85149 * 20 19 18 34 34 H 1.08999 * 110.42937 * 141.92877 * 20 19 18 35 35 H 1.09000 * 110.83533 * 204.49390 * 21 20 19 36 36 H 1.09001 * 110.83539 * 80.91197 * 21 20 19 37 37 H 1.08999 * 110.44478 * 274.93509 * 22 18 16 38 38 H 1.09006 * 110.44009 * 37.33156 * 22 18 16 39 39 H 1.09008 * 113.47329 * 321.86486 * 23 9 7 40 40 H 1.08996 * 113.47155 * 92.25117 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4478 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4984 -2.1213 -0.2438 9 7 3.3438 -1.2227 0.3109 10 6 4.3298 -0.2528 0.8107 11 6 5.1048 -1.4365 1.4125 12 6 4.6580 -1.8406 2.8189 13 7 5.4551 -1.1158 3.8117 14 6 5.2353 -1.3131 5.1266 15 8 4.3757 -2.0931 5.4891 16 6 6.0372 -0.5848 6.1247 17 9 6.9926 0.2814 5.7221 18 6 5.8205 -0.7800 7.4236 19 6 4.7886 -1.7068 8.0319 20 6 4.9215 -1.5800 9.5637 21 6 5.5708 -0.1867 9.7608 22 6 6.5574 -0.1097 8.5695 23 6 4.4217 -2.2228 0.2849 24 1 -0.4850 -0.8367 -0.0745 25 1 4.8718 0.2629 0.0181 26 1 3.9267 0.4295 1.5592 27 1 6.1871 -1.3577 1.3103 28 1 3.6041 -1.5952 2.9498 29 1 4.8006 -2.9131 2.9513 30 1 6.1405 -0.4933 3.5225 31 1 3.7886 -1.4088 7.7167 32 1 4.9849 -2.7346 7.7267 33 1 5.5666 -2.3631 9.9622 34 1 3.9392 -1.6149 10.0349 35 1 6.1044 -0.1384 10.7100 36 1 4.8221 0.6027 9.6952 37 1 7.4753 -0.6505 8.8000 38 1 6.7799 0.9286 8.3234 39 1 4.0970 -3.2190 0.5854 40 1 4.9874 -2.2272 -0.6468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753399539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:58 Heat of formation + Delta-G solvation = -18.738282 kcal Electronic energy + Delta-G solvation = -22046.626536 eV Core-core repulsion = 18584.686468 eV Total energy + Delta-G solvation = -3461.940068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.96421 -39.85350 -38.73501 -37.90583 -34.48633 -32.38568 -31.52606 -29.14358 -29.06278 -26.67850 -25.30495 -24.86761 -22.00867 -21.29281 -20.94127 -19.62384 -18.69956 -17.71114 -17.36051 -16.60615 -16.36122 -15.78161 -15.51460 -15.17913 -14.95075 -14.51576 -13.96693 -13.69749 -13.59341 -13.44014 -13.23856 -12.87347 -12.54873 -12.41785 -11.75010 -11.74024 -11.66013 -11.42639 -11.34517 -11.05191 -10.89883 -10.79276 -10.43720 -10.11287 -9.85122 -9.50307 -9.18958 -9.14189 -8.78180 -8.69253 -7.17112 -6.28393 -3.20554 1.02532 3.00730 3.08355 3.42014 3.47980 3.62823 3.97840 4.22808 4.36205 4.60810 4.71892 4.77985 4.86128 4.95670 5.01055 5.13677 5.14780 5.27530 5.45276 5.45987 5.55243 5.68321 5.73913 5.75011 5.83883 5.88565 5.94343 6.06362 6.12994 6.21835 6.24301 6.31270 6.37294 6.39230 6.53151 6.85324 7.14263 7.51585 8.12776 8.26288 8.99585 9.52964 10.38995 11.21625 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022566 B = 0.003832 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.494870 B = 7305.139665 C = 7489.389612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.024 4.024 3 Si 1.062 2.938 4 H -0.294 1.294 5 H -0.282 1.282 6 H -0.295 1.295 7 C -0.305 4.305 8 H 0.082 0.918 9 N -0.623 5.623 10 C 0.104 3.896 11 C -0.148 4.148 12 C 0.147 3.853 13 N -0.716 5.716 14 C 0.545 3.455 15 O -0.521 6.521 16 C -0.009 4.009 17 F -0.138 7.138 18 C -0.078 4.078 19 C -0.080 4.080 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.095 4.095 23 C 0.128 3.872 24 H 0.261 0.739 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.403 0.597 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.840 -1.274 17.075 24.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.223 4.223 3 Si 0.894 3.106 4 H -0.222 1.222 5 H -0.209 1.209 6 H -0.223 1.223 7 C -0.431 4.431 8 H 0.100 0.900 9 N -0.352 5.352 10 C -0.022 4.022 11 C -0.167 4.167 12 C 0.024 3.976 13 N -0.366 5.366 14 C 0.331 3.669 15 O -0.399 6.399 16 C -0.031 4.031 17 F -0.117 7.117 18 C -0.081 4.081 19 C -0.117 4.117 20 C -0.166 4.166 21 C -0.161 4.161 22 C -0.132 4.132 23 C 0.001 3.999 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.237 0.763 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 15.763 -0.187 17.264 23.378 hybrid contribution 0.787 -1.073 -0.644 1.478 sum 16.550 -1.259 16.620 23.488 Atomic orbital electron populations 1.70890 1.05434 1.29582 1.51521 1.25751 0.96502 1.00850 0.99178 0.83780 0.74527 0.75940 0.76400 1.22182 1.20860 1.22284 1.20140 0.80475 0.95946 1.46584 0.90046 1.46280 1.03565 1.08010 1.77329 1.22765 0.90163 0.93278 0.95947 1.23174 0.98511 1.00776 0.94270 1.21116 0.96223 0.95520 0.84693 1.45950 1.39531 1.45655 1.05502 1.18103 0.83531 0.82664 0.82594 1.90836 1.32841 1.36171 1.80017 1.18933 0.94208 0.97577 0.92373 1.91462 1.61527 1.67461 1.91221 1.23010 0.96786 0.96139 0.92139 1.21168 0.97941 0.98996 0.93603 1.22479 1.01307 0.97087 0.95697 1.22527 0.98228 0.97879 0.97425 1.21492 0.98392 1.00805 0.92515 1.22322 0.89019 0.94504 0.94059 0.92834 0.93538 0.93000 0.90238 0.89555 0.91284 0.76289 0.88954 0.89243 0.91208 0.90864 0.90810 0.90888 0.89281 0.90221 0.93396 0.94232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.85 13.70 55.49 0.76 -29.09 16 2 C -0.02 -0.71 5.50 -17.43 -0.10 -0.81 16 3 Si 1.06 26.95 25.50 -169.99 -4.34 22.61 16 4 H -0.29 -7.23 6.97 56.52 0.39 -6.83 16 5 H -0.28 -6.58 5.66 56.52 0.32 -6.26 16 6 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 7 C -0.31 -8.86 11.03 -15.06 -0.17 -9.02 16 8 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 9 N -0.62 -15.21 3.46 -184.63 -0.64 -15.85 16 10 C 0.10 2.14 5.13 -8.39 -0.04 2.10 16 11 C -0.15 -2.41 4.17 -89.97 -0.37 -2.79 16 12 C 0.15 2.45 5.51 -4.04 -0.02 2.43 16 13 N -0.72 -10.41 5.55 -61.42 -0.34 -10.75 16 14 C 0.55 8.36 7.77 -12.58 -0.10 8.26 16 15 O -0.52 -9.32 14.12 5.27 0.07 -9.25 16 16 C -0.01 -0.11 7.42 -37.68 -0.28 -0.39 16 17 F -0.14 -1.69 16.52 2.25 0.04 -1.65 16 18 C -0.08 -0.87 6.16 -100.20 -0.62 -1.49 16 19 C -0.08 -0.87 4.82 -26.85 -0.13 -1.00 16 20 C -0.13 -1.01 6.88 -25.02 -0.17 -1.18 16 21 C -0.12 -0.88 6.94 -24.70 -0.17 -1.05 16 22 C -0.10 -0.79 6.44 -26.33 -0.17 -0.96 16 23 C 0.13 2.44 8.25 -8.52 -0.07 2.37 16 24 H 0.26 8.27 8.73 -40.82 -0.36 7.92 16 25 H 0.05 0.93 7.02 -51.93 -0.36 0.57 16 26 H 0.05 1.13 6.21 -51.93 -0.32 0.80 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.09 1.79 7.93 -51.93 -0.41 1.37 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.40 4.91 8.02 -40.82 -0.33 4.59 16 31 H 0.09 1.15 7.67 -51.93 -0.40 0.75 16 32 H 0.09 1.04 7.68 -51.93 -0.40 0.64 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.89 8.12 -51.92 -0.42 0.47 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 327.34 15.07 4.93 4.93 Total: -1.00 -33.33 327.34 -8.04 -41.37 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.11 Total: 1.19 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -2.41 Total: -3.53 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.22 Total: -55.68 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.07 Total: -9.25 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 26.95 SS G_CDS: -4.34 Total: 22.61 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.33 -8.04 -41.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753399539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.631 kcal (2) G-P(sol) polarization free energy of solvation -33.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds