Wall clock time and date at job start Tue Mar 31 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.33222 * 126.01485 * 2 1 4 4 C 1.31536 * 109.76009 * 180.11693 * 3 2 1 5 5 O 1.35203 * 125.49785 * 179.88678 * 4 3 2 6 6 N 1.34946 * 109.01397 * 359.62048 * 4 3 2 7 7 H 0.97002 * 126.55213 * 180.20819 * 6 4 3 8 8 C 1.36717 * 126.01923 * 179.69664 * 2 1 3 9 9 C 1.46379 * 126.82304 * 0.02562 * 8 2 1 10 10 O 1.21730 * 120.00152 * 0.02562 * 9 8 2 11 11 N 1.34780 * 119.99633 * 180.02562 * 9 8 2 12 12 C 1.46500 * 119.99669 * 180.02562 * 11 9 8 13 13 H 1.08993 * 109.47487 * 35.00249 * 12 11 9 14 14 C 1.53004 * 109.47155 * 274.99927 * 12 11 9 15 15 C 1.53001 * 109.46851 * 155.00122 * 12 11 9 16 16 C 1.52996 * 109.47174 * 294.99587 * 15 12 11 17 17 N 1.46508 * 109.47310 * 179.97438 * 16 15 12 18 18 C 1.36931 * 120.00096 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00086 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00180 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99969 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00408 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47071 * 90.00139 * 22 20 18 24 24 H 1.48497 * 109.47515 * 210.00235 * 22 20 18 25 25 H 1.48507 * 109.47180 * 330.00230 * 22 20 18 26 26 H 1.09002 * 109.46664 * 270.30576 * 1 2 3 27 27 H 1.09001 * 109.46971 * 30.30927 * 1 2 3 28 28 H 1.09000 * 109.46903 * 150.30489 * 1 2 3 29 29 H 0.96700 * 114.00205 * 269.69423 * 5 4 3 30 30 H 0.97003 * 119.99902 * 359.97438 * 11 9 8 31 31 H 1.09001 * 109.47195 * 180.02562 * 14 12 11 32 32 H 1.09004 * 109.46549 * 300.00214 * 14 12 11 33 33 H 1.08994 * 109.47132 * 59.99990 * 14 12 11 34 34 H 1.09001 * 109.47528 * 55.00174 * 15 12 11 35 35 H 1.09000 * 109.47324 * 174.99906 * 15 12 11 36 36 H 1.08997 * 109.47386 * 300.00172 * 16 15 12 37 37 H 1.09004 * 109.47204 * 60.00067 * 16 15 12 38 38 H 0.96994 * 119.99495 * 0.02562 * 17 16 15 39 39 H 0.96998 * 120.00478 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0025 5 8 4.6150 1.5464 -0.0054 6 7 3.6182 -0.6385 0.0042 7 1 4.4243 -1.1780 0.0070 8 6 2.3110 -1.1058 0.0059 9 6 1.8792 -2.5044 0.0127 10 8 0.6924 -2.7750 0.0132 11 7 2.7958 -3.4926 0.0186 12 6 2.3636 -4.8924 0.0249 13 1 1.4528 -4.9941 -0.5651 14 6 2.0914 -5.3356 1.4638 15 6 3.4631 -5.7682 -0.5793 16 6 3.6485 -5.4086 -2.0547 17 7 4.7017 -6.2469 -2.6331 18 6 5.0446 -6.1034 -3.9510 19 1 4.5389 -5.3720 -4.5641 20 6 6.0421 -6.8980 -4.4991 21 7 6.6580 -7.7896 -3.7522 22 14 6.5104 -6.7018 -6.2968 23 1 7.5921 -5.6919 -6.4192 24 1 6.9862 -8.0038 -6.8293 25 1 5.3250 -6.2538 -7.0711 26 1 -0.3633 0.0055 1.0277 27 1 -0.3633 0.8872 -0.5186 28 1 -0.3633 -0.8927 -0.5091 29 1 4.9249 1.7856 -0.8897 30 1 3.7415 -3.2769 0.0178 31 1 1.7703 -6.3773 1.4685 32 1 3.0024 -5.2339 2.0537 33 1 1.3082 -4.7116 1.8942 34 1 4.3974 -5.5995 -0.0439 35 1 3.1799 -6.8173 -0.4939 36 1 2.7142 -5.5775 -2.5901 37 1 3.9317 -4.3595 -2.1402 38 1 5.1556 -6.9039 -2.0826 39 1 7.3553 -8.3446 -4.1351 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753973799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:15 Heat of formation + Delta-G solvation = -16.288597 kcal Electronic energy + Delta-G solvation = -21856.211586 eV Core-core repulsion = 18414.297706 eV Total energy + Delta-G solvation = -3441.913880 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.51093 -39.66162 -37.75580 -36.59715 -34.52694 -33.62089 -32.00229 -31.10609 -30.43096 -27.95938 -27.19868 -24.19141 -23.32032 -22.15007 -21.40531 -20.60985 -20.22088 -19.59732 -18.10954 -17.16839 -16.61913 -16.25716 -15.78555 -15.23126 -14.74397 -14.37412 -14.10558 -13.91891 -13.51136 -13.39919 -13.37949 -12.91321 -12.81449 -12.61640 -12.46323 -12.25021 -11.92525 -11.29466 -11.10471 -10.87508 -10.74946 -10.64505 -10.58832 -10.34005 -10.11590 -9.98886 -9.77574 -9.22196 -8.94402 -8.60237 -7.00692 -5.84017 -3.13300 0.92624 2.09665 2.43325 3.00768 3.15476 3.37860 3.43720 3.45415 3.55241 4.48058 4.50894 4.67941 4.84120 4.96846 5.15210 5.25773 5.30706 5.47784 5.63491 5.64900 5.66028 5.75503 5.82702 5.85353 5.94599 6.13725 6.19351 6.23465 6.25954 6.36656 6.39823 6.70477 6.76381 7.18782 7.33979 7.55516 7.62866 8.03731 8.34860 9.46095 10.02985 10.37676 11.38783 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.015721 B = 0.003845 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.622626 B = 7279.968519 C = 8325.609675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.112 3.888 3 N -0.490 5.490 4 C 0.412 3.588 5 O -0.442 6.442 6 N -0.554 5.554 7 H 0.424 0.576 8 C -0.082 4.082 9 C 0.598 3.402 10 O -0.523 6.523 11 N -0.717 5.717 12 C 0.146 3.854 13 H 0.093 0.907 14 C -0.161 4.161 15 C -0.136 4.136 16 C 0.154 3.846 17 N -0.734 5.734 18 C -0.242 4.242 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.281 1.281 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.409 0.591 30 H 0.395 0.605 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.020 0.980 37 H 0.015 0.985 38 H 0.384 0.616 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.121 13.752 10.734 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.023 4.023 3 N -0.221 5.221 4 C 0.110 3.890 5 O -0.244 6.244 6 N -0.172 5.172 7 H 0.263 0.737 8 C -0.196 4.196 9 C 0.384 3.616 10 O -0.399 6.399 11 N -0.368 5.368 12 C 0.042 3.958 13 H 0.111 0.889 14 C -0.220 4.220 15 C -0.174 4.174 16 C 0.027 3.973 17 N -0.378 5.378 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.267 0.733 30 H 0.229 0.771 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.217 0.783 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.218 14.420 11.157 19.999 hybrid contribution 2.191 -0.967 -1.335 2.742 sum -6.027 13.453 9.822 17.713 Atomic orbital electron populations 1.20350 0.85897 1.04048 1.03282 1.20951 0.96907 0.85855 0.98550 1.70288 0.98576 1.30381 1.22829 1.20169 0.87418 0.78691 1.02685 1.84821 1.43293 1.61584 1.34664 1.43733 1.08907 1.07968 1.56625 0.73651 1.20871 0.82945 0.95410 1.20408 1.16633 0.86030 0.82329 0.76613 1.90830 1.15762 1.82788 1.50569 1.46035 1.09160 1.06644 1.74937 1.21044 0.99052 0.78863 0.96832 0.88872 1.22170 1.01833 1.01862 0.96110 1.22083 0.97716 0.99989 0.97612 1.20627 0.92375 0.94125 0.90205 1.42365 1.41880 1.43827 1.09757 1.19219 1.15015 1.16201 0.86880 0.91272 1.24741 0.99225 0.98740 0.98169 1.69653 1.27852 1.25436 1.35251 0.86190 0.78263 0.76946 0.84808 1.21719 1.21652 1.20705 0.90506 0.90868 0.88782 0.73294 0.77147 0.91281 0.92594 0.92191 0.91438 0.89946 0.96253 0.96733 0.78298 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.87 36.01 0.36 -0.49 16 2 C 0.11 1.42 7.14 -82.54 -0.59 0.83 16 3 N -0.49 -6.32 11.22 -10.83 -0.12 -6.45 16 4 C 0.41 4.40 9.43 -89.59 -0.84 3.56 16 5 O -0.44 -3.56 13.62 -17.30 -0.24 -3.80 16 6 N -0.55 -5.33 6.12 -10.91 -0.07 -5.40 16 7 H 0.42 2.94 8.32 -40.82 -0.34 2.60 16 8 C -0.08 -0.98 7.08 -81.98 -0.58 -1.56 16 9 C 0.60 7.82 7.74 -12.98 -0.10 7.72 16 10 O -0.52 -8.06 14.46 5.16 0.07 -7.98 16 11 N -0.72 -8.34 4.53 -55.20 -0.25 -8.59 16 12 C 0.15 1.82 2.57 -67.93 -0.17 1.65 16 13 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 14 C -0.16 -1.74 9.48 37.16 0.35 -1.39 16 15 C -0.14 -1.95 4.87 -26.73 -0.13 -2.08 16 16 C 0.15 2.94 6.15 -4.04 -0.02 2.92 16 17 N -0.73 -18.07 5.60 -59.91 -0.34 -18.41 16 18 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 22 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 1.09 6.46 -51.93 -0.34 0.76 16 29 H 0.41 1.22 9.06 45.56 0.41 1.63 16 30 H 0.39 3.90 7.84 -40.82 -0.32 3.58 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.01 0.28 7.75 -51.93 -0.40 -0.12 16 38 H 0.38 9.86 7.67 -40.82 -0.31 9.55 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 335.26 15.07 5.05 5.05 Total: -1.00 -34.58 335.26 -6.78 -41.37 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -4.62 Total: 10.30 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.98 Total: 3.86 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: -0.05 Total: -65.85 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.16 Total: -11.78 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.58 -6.78 -41.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753973799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.078 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds