Wall clock time and date at job start Tue Mar 31 2020 06:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47172 * 2 1 4 4 C 1.52999 * 109.47172 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47231 * 180.02562 * 4 3 2 6 6 N 1.29021 * 124.91601 * 90.00122 * 5 4 3 7 7 C 1.31779 * 117.12356 * 180.02562 * 6 5 4 8 8 C 1.50703 * 122.75059 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47457 * 275.00166 * 8 7 6 10 10 C 1.36940 * 119.99402 * 270.00164 * 9 8 7 11 11 H 1.07998 * 120.00354 * 329.12572 * 10 9 8 12 12 C 1.38813 * 119.99510 * 149.13541 * 10 9 8 13 13 N 1.31616 * 120.00195 * 332.72022 * 12 10 9 14 14 Si 1.86801 * 119.99800 * 152.72996 * 12 10 9 15 15 H 1.48499 * 109.47200 * 84.99546 * 14 12 10 16 16 H 1.48498 * 109.47014 * 204.99146 * 14 12 10 17 17 H 1.48496 * 109.47050 * 324.99149 * 14 12 10 18 18 C 1.46498 * 120.00228 * 89.99589 * 9 8 7 19 19 C 1.52995 * 109.46954 * 85.62156 * 18 9 8 20 20 C 1.53006 * 109.47075 * 180.02562 * 19 18 9 21 21 C 1.33640 * 114.50250 * 0.23055 * 7 6 5 22 22 S 1.70979 * 124.91302 * 270.00092 * 5 4 3 23 23 H 1.09001 * 109.47111 * 59.99900 * 1 2 3 24 24 H 1.09000 * 109.46905 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47350 * 299.99673 * 1 2 3 26 26 H 1.09006 * 109.46951 * 240.00352 * 2 1 3 27 27 H 1.08994 * 109.46946 * 120.00505 * 2 1 3 28 28 H 1.09006 * 109.46895 * 60.00318 * 3 2 1 29 29 H 1.09001 * 109.47184 * 300.00056 * 3 2 1 30 30 H 1.09006 * 109.46951 * 60.00352 * 4 3 2 31 31 H 1.09000 * 109.47182 * 300.00885 * 4 3 2 32 32 H 1.08999 * 109.47342 * 154.99408 * 8 7 6 33 33 H 1.09008 * 109.46940 * 34.99828 * 8 7 6 34 34 H 0.96995 * 120.00242 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.47177 * 205.62507 * 18 9 8 36 36 H 1.09004 * 109.46958 * 325.62282 * 18 9 8 37 37 H 1.08999 * 109.47464 * 300.00174 * 19 18 9 38 38 H 1.09004 * 109.47185 * 60.00265 * 19 18 9 39 39 H 1.09004 * 109.46916 * 60.00077 * 20 19 18 40 40 H 1.08993 * 109.47389 * 180.02562 * 20 19 18 41 41 H 1.08999 * 109.47098 * 300.00376 * 20 19 18 42 42 H 1.08000 * 126.04165 * 179.77304 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0013 6 7 4.3181 3.5592 1.0596 7 6 4.7529 4.7904 0.8814 8 6 5.0784 5.7138 2.0271 9 7 3.8559 6.3849 2.4759 10 6 3.4866 7.5797 1.9180 11 1 4.2409 8.2648 1.5602 12 6 2.1425 7.9103 1.8126 13 7 1.2360 6.9602 1.7240 14 14 1.6204 9.7038 1.7963 15 1 1.7130 10.2338 0.4122 16 1 0.2197 9.8160 2.2765 17 1 2.5134 10.4874 2.6872 18 6 3.0287 5.7778 3.5215 19 6 3.5648 6.1836 4.8958 20 6 2.7012 5.5489 5.9878 21 6 4.8765 5.1549 -0.3984 22 16 4.3991 3.7863 -1.4004 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6767 1.9564 -0.8900 30 1 3.9337 0.9286 -0.8892 31 1 3.9330 0.9287 0.8908 32 1 5.8025 6.4593 1.6984 33 1 5.4994 5.1368 2.8505 34 1 0.2969 7.1912 1.6507 35 1 1.9999 6.1222 3.4166 36 1 3.0601 4.6925 3.4252 37 1 4.5936 5.8391 5.0007 38 1 3.5334 7.2689 4.9921 39 1 2.7330 4.4636 5.8914 40 1 3.0828 5.8384 6.9669 41 1 1.6723 5.8930 5.8831 42 1 5.2118 6.1174 -0.7554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058922054.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:09 Heat of formation + Delta-G solvation = 33.718943 kcal Electronic energy + Delta-G solvation = -20324.726616 eV Core-core repulsion = 17431.274441 eV Total energy + Delta-G solvation = -2893.452176 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.15083 -36.17520 -35.53079 -32.50528 -32.01266 -30.78980 -28.61032 -26.13688 -25.55129 -24.94011 -22.45733 -21.42308 -20.88574 -19.90717 -18.94865 -17.15623 -16.36890 -15.37873 -14.95409 -14.74501 -14.33871 -14.07742 -13.81447 -13.42538 -13.29655 -13.25199 -12.80793 -12.54469 -12.24706 -12.02823 -11.80580 -11.37349 -11.18289 -11.13294 -10.92097 -10.83074 -10.79971 -10.78482 -10.59764 -10.46332 -10.28054 -10.01419 -9.85100 -9.45041 -8.95043 -8.66970 -8.45672 -7.96773 -6.70115 -5.83571 -3.28163 1.45396 2.07965 2.44965 3.33933 3.42181 3.44905 3.63476 4.47998 4.58410 4.99393 5.05026 5.15137 5.27197 5.40012 5.54809 5.61975 5.71769 5.81245 5.90160 5.91066 5.95665 5.98129 6.01786 6.03785 6.18419 6.20063 6.26664 6.34908 6.48436 6.56653 6.62007 6.66693 6.73724 6.91411 6.99485 7.02406 7.34037 7.75912 7.82633 8.43421 8.56997 9.13905 9.78705 10.35041 11.16395 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.005385 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.473929 B = 5198.434002 C = 5543.473443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.115 4.115 4 C -0.035 4.035 5 C 0.044 3.956 6 N -0.454 5.454 7 C 0.071 3.929 8 C 0.209 3.791 9 N -0.567 5.567 10 C -0.259 4.259 11 H 0.065 0.935 12 C 0.012 3.988 13 N -0.874 5.874 14 Si 0.893 3.107 15 H -0.286 1.286 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.145 3.855 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.241 4.241 22 S 0.048 5.952 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.254 0.746 35 H 0.095 0.905 36 H 0.028 0.972 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.039 0.961 41 H 0.049 0.951 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 -10.698 -2.722 11.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.154 4.154 4 C -0.076 4.076 5 C -0.235 4.235 6 N -0.168 5.168 7 C -0.062 4.062 8 C 0.079 3.921 9 N -0.284 5.284 10 C -0.389 4.389 11 H 0.083 0.917 12 C -0.189 4.189 13 N -0.516 5.516 14 Si 0.722 3.278 15 H -0.213 1.213 16 H -0.215 1.215 17 H -0.203 1.203 18 C 0.019 3.981 19 C -0.179 4.179 20 C -0.202 4.202 21 C -0.381 4.381 22 S 0.300 5.700 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.946 -11.077 -3.264 11.918 hybrid contribution -0.393 1.621 0.441 1.726 sum 2.553 -9.456 -2.823 10.193 Atomic orbital electron populations 1.21767 0.95850 1.01210 1.02203 1.21505 0.95970 0.96591 1.01762 1.21616 0.93506 0.96823 1.03410 1.20155 0.96007 0.88249 1.03192 1.26792 1.04539 1.01281 0.90909 1.66066 1.13177 1.06563 1.31019 1.21756 0.98005 0.90366 0.96108 1.19766 0.91101 0.91002 0.90232 1.44166 1.24926 1.21020 1.38308 1.19099 0.90629 0.92082 1.37122 0.91725 1.25027 0.96870 0.97247 0.99785 1.70104 1.00913 1.31263 1.49274 0.86482 0.77663 0.85704 0.77998 1.21268 1.21492 1.20319 1.21022 0.98183 0.94672 0.84209 1.22055 0.98137 1.00436 0.97229 1.21681 1.00284 1.00227 0.97992 1.26613 1.13194 1.02977 0.95306 1.83479 1.63780 1.07934 1.14776 0.92748 0.93013 0.92494 0.92201 0.91952 0.90878 0.91778 0.90527 0.89466 0.92118 0.92831 0.93572 0.88754 0.95337 0.94033 0.92586 0.93553 0.94143 0.93198 0.81647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.23 16 2 C -0.12 -1.29 5.93 -26.73 -0.16 -1.45 16 3 C -0.11 -1.57 5.20 -26.73 -0.14 -1.71 16 4 C -0.03 -0.48 5.80 -27.88 -0.16 -0.64 16 5 C 0.04 0.79 6.64 -13.46 -0.09 0.70 16 6 N -0.45 -9.54 10.53 -8.06 -0.08 -9.63 16 7 C 0.07 1.53 6.32 -84.22 -0.53 1.00 16 8 C 0.21 4.54 6.12 -5.19 -0.03 4.51 16 9 N -0.57 -14.08 2.45 -174.61 -0.43 -14.51 16 10 C -0.26 -6.95 9.48 -15.06 -0.14 -7.10 16 11 H 0.07 1.71 7.96 -52.49 -0.42 1.29 16 12 C 0.01 0.33 4.82 -17.43 -0.08 0.24 16 13 N -0.87 -25.13 11.45 55.49 0.64 -24.49 16 14 Si 0.89 21.37 29.63 -169.99 -5.04 16.33 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.14 3.50 5.27 -4.05 -0.02 3.48 16 19 C -0.14 -2.85 6.26 -26.73 -0.17 -3.01 16 20 C -0.14 -2.51 9.91 37.16 0.37 -2.14 16 21 C -0.24 -4.81 11.12 29.12 0.32 -4.49 16 22 S 0.05 0.82 23.18 -107.50 -2.49 -1.68 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.23 8.00 -51.93 -0.42 0.82 16 33 H 0.05 1.10 8.07 -51.92 -0.42 0.68 16 34 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 35 H 0.09 2.57 5.31 -51.93 -0.28 2.30 16 36 H 0.03 0.70 8.11 -51.93 -0.42 0.28 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.17 3.10 8.06 -52.49 -0.42 2.68 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -29.55 359.16 -9.89 -39.44 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.43 Total: 0.96 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -0.47 Total: -11.85 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.12 Total: -48.63 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.04 Total: 16.33 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.49 Total: -1.68 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.55 -9.89 -39.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058922054.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.162 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds