Wall clock time and date at job start Tue Mar 31 2020 06:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47172 * 2 1 4 4 C 1.52999 * 109.47172 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47231 * 180.02562 * 4 3 2 6 6 N 1.29021 * 124.91601 * 90.00122 * 5 4 3 7 7 C 1.31779 * 117.12356 * 180.02562 * 6 5 4 8 8 C 1.50703 * 122.75059 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47457 * 275.00166 * 8 7 6 10 10 C 1.36940 * 119.99402 * 270.00164 * 9 8 7 11 11 H 1.07998 * 120.00354 * 329.12572 * 10 9 8 12 12 C 1.38813 * 119.99510 * 149.13541 * 10 9 8 13 13 N 1.31616 * 120.00195 * 332.72022 * 12 10 9 14 14 Si 1.86801 * 119.99800 * 152.72996 * 12 10 9 15 15 H 1.48499 * 109.47200 * 84.99546 * 14 12 10 16 16 H 1.48498 * 109.47014 * 204.99146 * 14 12 10 17 17 H 1.48496 * 109.47050 * 324.99149 * 14 12 10 18 18 C 1.46498 * 120.00228 * 89.99589 * 9 8 7 19 19 C 1.52995 * 109.46954 * 85.62156 * 18 9 8 20 20 C 1.53006 * 109.47075 * 180.02562 * 19 18 9 21 21 C 1.33640 * 114.50250 * 0.23055 * 7 6 5 22 22 S 1.70979 * 124.91302 * 270.00092 * 5 4 3 23 23 H 1.09001 * 109.47111 * 59.99900 * 1 2 3 24 24 H 1.09000 * 109.46905 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47350 * 299.99673 * 1 2 3 26 26 H 1.09006 * 109.46951 * 240.00352 * 2 1 3 27 27 H 1.08994 * 109.46946 * 120.00505 * 2 1 3 28 28 H 1.09006 * 109.46895 * 60.00318 * 3 2 1 29 29 H 1.09001 * 109.47184 * 300.00056 * 3 2 1 30 30 H 1.09006 * 109.46951 * 60.00352 * 4 3 2 31 31 H 1.09000 * 109.47182 * 300.00885 * 4 3 2 32 32 H 1.08999 * 109.47342 * 154.99408 * 8 7 6 33 33 H 1.09008 * 109.46940 * 34.99828 * 8 7 6 34 34 H 0.96995 * 120.00242 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.47177 * 205.62507 * 18 9 8 36 36 H 1.09004 * 109.46958 * 325.62282 * 18 9 8 37 37 H 1.08999 * 109.47464 * 300.00174 * 19 18 9 38 38 H 1.09004 * 109.47185 * 60.00265 * 19 18 9 39 39 H 1.09004 * 109.46916 * 60.00077 * 20 19 18 40 40 H 1.08993 * 109.47389 * 180.02562 * 20 19 18 41 41 H 1.08999 * 109.47098 * 300.00376 * 20 19 18 42 42 H 1.08000 * 126.04165 * 179.77304 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0013 6 7 4.3181 3.5592 1.0596 7 6 4.7529 4.7904 0.8814 8 6 5.0784 5.7138 2.0271 9 7 3.8559 6.3849 2.4759 10 6 3.4866 7.5797 1.9180 11 1 4.2409 8.2648 1.5602 12 6 2.1425 7.9103 1.8126 13 7 1.2360 6.9602 1.7240 14 14 1.6204 9.7038 1.7963 15 1 1.7130 10.2338 0.4122 16 1 0.2197 9.8160 2.2765 17 1 2.5134 10.4874 2.6872 18 6 3.0287 5.7778 3.5215 19 6 3.5648 6.1836 4.8958 20 6 2.7012 5.5489 5.9878 21 6 4.8765 5.1549 -0.3984 22 16 4.3991 3.7863 -1.4004 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6767 1.9564 -0.8900 30 1 3.9337 0.9286 -0.8892 31 1 3.9330 0.9287 0.8908 32 1 5.8025 6.4593 1.6984 33 1 5.4994 5.1368 2.8505 34 1 0.2969 7.1912 1.6507 35 1 1.9999 6.1222 3.4166 36 1 3.0601 4.6925 3.4252 37 1 4.5936 5.8391 5.0007 38 1 3.5334 7.2689 4.9921 39 1 2.7330 4.4636 5.8914 40 1 3.0828 5.8384 6.9669 41 1 1.6723 5.8930 5.8831 42 1 5.2118 6.1174 -0.7554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058922054.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:08 Heat of formation + Delta-G solvation = 18.932858 kcal Electronic energy + Delta-G solvation = -20325.367789 eV Core-core repulsion = 17431.274441 eV Total energy + Delta-G solvation = -2894.093348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.69095 -37.89013 -36.72258 -34.19637 -33.66123 -32.28024 -30.04392 -27.88174 -27.35909 -26.18637 -24.11282 -22.81642 -21.98577 -21.61634 -20.48977 -18.92264 -18.10937 -16.84118 -16.42535 -16.20127 -16.04075 -15.73154 -15.31283 -14.89359 -14.83003 -14.50708 -14.16673 -13.99215 -13.62140 -13.49269 -13.22103 -13.13807 -12.70060 -12.63712 -12.46544 -12.28911 -12.15772 -12.13182 -12.03806 -11.85344 -11.81634 -11.67803 -11.45965 -11.29495 -10.53777 -10.40086 -10.14488 -9.47668 -8.69159 -7.86886 -5.35956 -0.03385 0.63810 0.93445 1.43028 1.46943 1.55814 2.03832 2.51640 3.20126 3.29709 3.76964 3.95995 4.04282 4.09467 4.32151 4.38287 4.41667 4.46037 4.51409 4.54740 4.69734 4.72380 4.75695 4.88007 4.91256 4.92681 5.01761 5.09362 5.10067 5.13526 5.26603 5.26826 5.34047 5.37588 5.44591 5.49399 5.53723 5.67117 5.87736 6.39668 7.04934 7.12459 7.82392 8.35429 9.10916 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.005385 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.473929 B = 5198.434002 C = 5543.473443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.110 4.110 4 C -0.034 4.034 5 C 0.039 3.961 6 N -0.490 5.490 7 C 0.051 3.949 8 C 0.209 3.791 9 N -0.581 5.581 10 C -0.264 4.264 11 H 0.065 0.935 12 C -0.036 4.036 13 N -0.910 5.910 14 Si 0.952 3.048 15 H -0.283 1.283 16 H -0.294 1.294 17 H -0.271 1.271 18 C 0.152 3.848 19 C -0.129 4.129 20 C -0.137 4.137 21 C -0.265 4.265 22 S 0.110 5.890 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.056 0.944 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.249 0.751 35 H 0.063 0.937 36 H 0.013 0.987 37 H 0.051 0.949 38 H 0.042 0.958 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.962 -11.914 -3.350 12.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.149 4.149 4 C -0.075 4.075 5 C -0.240 4.240 6 N -0.205 5.205 7 C -0.082 4.082 8 C 0.080 3.920 9 N -0.300 5.300 10 C -0.394 4.394 11 H 0.083 0.917 12 C -0.233 4.233 13 N -0.553 5.553 14 Si 0.780 3.220 15 H -0.210 1.210 16 H -0.220 1.220 17 H -0.196 1.196 18 C 0.026 3.974 19 C -0.168 4.168 20 C -0.195 4.195 21 C -0.404 4.404 22 S 0.364 5.636 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.129 0.871 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.662 -12.299 -3.906 13.414 hybrid contribution -0.524 1.875 0.540 2.021 sum 3.138 -10.424 -3.365 11.394 Atomic orbital electron populations 1.21790 0.95855 1.02239 1.01357 1.21475 0.95927 0.94417 1.03282 1.21558 0.93481 0.98646 1.01206 1.20379 0.95783 0.86061 1.05258 1.27592 1.02817 1.02708 0.90871 1.66078 1.14953 1.06831 1.32687 1.21654 0.99024 0.91056 0.96474 1.19757 0.89962 0.91403 0.90899 1.44270 1.25395 1.21275 1.39066 1.19322 0.90723 0.93056 1.36276 0.91720 1.25668 0.96923 1.00410 1.00334 1.70241 1.00720 1.32883 1.51476 0.85543 0.76861 0.81649 0.77913 1.21012 1.22025 1.19631 1.20858 0.96859 0.93496 0.86154 1.21897 0.99147 0.99685 0.96085 1.21622 0.99249 1.00402 0.98210 1.26841 1.13259 1.04389 0.95949 1.83165 1.62098 1.05521 1.12814 0.92982 0.91023 0.94041 0.89854 0.91158 0.94535 0.92565 0.87063 0.88699 0.91146 0.92248 0.94216 0.91937 0.96817 0.92980 0.93951 0.92835 0.91280 0.94007 0.81092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.91 71.98 0.71 -2.31 16 2 C -0.11 -2.18 5.93 30.59 0.18 -1.99 16 3 C -0.11 -2.90 5.20 30.59 0.16 -2.74 16 4 C -0.03 -0.87 5.80 29.85 0.17 -0.70 16 5 C 0.04 1.35 6.64 88.52 0.59 1.94 16 6 N -0.49 -20.67 10.53 -179.40 -1.89 -22.56 16 7 C 0.05 2.22 6.32 41.52 0.26 2.48 16 8 C 0.21 9.19 6.12 85.63 0.52 9.71 16 9 N -0.58 -29.46 2.45 -706.33 -1.73 -31.20 16 10 C -0.26 -14.34 9.48 84.03 0.80 -13.54 16 11 H 0.07 3.44 7.96 -2.91 -0.02 3.42 16 12 C -0.04 -1.98 4.82 84.86 0.41 -1.57 16 13 N -0.91 -53.94 11.45 21.65 0.25 -53.69 16 14 Si 0.95 44.69 29.63 68.60 2.03 46.72 16 15 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 16 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 18 C 0.15 7.55 5.27 86.38 0.46 8.01 16 19 C -0.13 -5.27 6.26 30.59 0.19 -5.08 16 20 C -0.14 -4.64 9.91 71.98 0.71 -3.93 16 21 C -0.26 -10.47 11.12 66.78 0.74 -9.72 16 22 S 0.11 3.58 23.18 -56.49 -1.31 2.28 16 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.11 2.09 8.14 -2.38 -0.02 2.08 16 31 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.07 2.88 8.00 -2.39 -0.02 2.86 16 33 H 0.06 2.47 8.07 -2.38 -0.02 2.45 16 34 H 0.25 14.35 8.31 -92.71 -0.77 13.57 16 35 H 0.06 3.55 5.31 -2.39 -0.01 3.54 16 36 H 0.01 0.69 8.11 -2.39 -0.02 0.67 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.17 6.38 8.06 -2.91 -0.02 6.36 16 Total: -1.00 -64.96 359.16 4.22 -60.74 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.96 Total: 17.17 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 5.91 Total: -19.45 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -3.37 Total: -107.45 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -1.31 Total: 2.28 kcal Total: -64.96 4.22 -60.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058922054.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.671 kcal (2) G-P(sol) polarization free energy of solvation -64.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds