Wall clock time and date at job start Tue Mar 31 2020 06:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31778 * 122.74764 * 2 1 4 4 C 1.29028 * 117.12837 * 180.02562 * 3 2 1 5 5 C 1.50699 * 124.91991 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47078 * 60.00024 * 5 4 3 7 7 C 1.52992 * 109.46956 * 299.99712 * 5 4 3 8 8 N 1.46906 * 109.46750 * 179.97438 * 5 4 3 9 9 C 1.46898 * 110.99498 * 180.02562 * 8 5 4 10 10 C 1.53006 * 109.47138 * 179.97438 * 9 8 5 11 11 C 1.52996 * 109.47440 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47331 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00090 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00034 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00193 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99791 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47189 * 60.00745 * 16 14 12 18 18 H 1.48504 * 109.46955 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47368 * 300.00394 * 16 14 12 20 20 S 1.70982 * 110.16088 * 0.22930 * 4 3 2 21 21 C 1.33636 * 122.75111 * 180.02562 * 2 1 3 22 22 C 1.50697 * 126.03648 * 359.97438 * 21 2 1 23 23 H 1.08998 * 109.46986 * 89.97418 * 1 2 3 24 24 H 1.09001 * 109.46725 * 209.97412 * 1 2 3 25 25 H 1.09003 * 109.47314 * 329.97289 * 1 2 3 26 26 H 1.09002 * 109.47153 * 299.99793 * 6 5 4 27 27 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 28 28 H 1.09004 * 109.47261 * 59.99965 * 6 5 4 29 29 H 1.09001 * 109.47066 * 180.02562 * 7 5 4 30 30 H 1.08996 * 109.47747 * 299.99900 * 7 5 4 31 31 H 1.09002 * 109.47103 * 60.00312 * 7 5 4 32 32 H 1.00904 * 111.00081 * 303.94977 * 8 5 4 33 33 H 1.08995 * 109.47296 * 299.99915 * 9 8 5 34 34 H 1.08997 * 109.47334 * 60.00216 * 9 8 5 35 35 H 1.09004 * 109.46866 * 299.99877 * 10 9 8 36 36 H 1.08997 * 109.46770 * 59.99946 * 10 9 8 37 37 H 1.08999 * 109.46939 * 300.00567 * 11 10 9 38 38 H 1.09000 * 109.46858 * 59.99786 * 11 10 9 39 39 H 0.96997 * 120.00281 * 179.97438 * 15 14 12 40 40 H 1.08997 * 109.47668 * 90.00335 * 22 21 2 41 41 H 1.09007 * 109.46999 * 210.00085 * 22 21 2 42 42 H 1.08994 * 109.47238 * 329.99893 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9820 -0.0005 5 6 4.4834 2.1272 -0.0012 6 6 4.2673 2.9838 1.2480 7 6 4.2663 2.9833 -1.2505 8 7 5.8543 1.5991 -0.0010 9 6 6.8385 2.6896 -0.0010 10 6 8.2511 2.1017 -0.0002 11 6 9.2762 3.2374 -0.0009 12 6 10.6675 2.6584 0.0006 13 1 10.8066 1.5874 0.0014 14 6 11.7627 3.4959 -0.0002 15 7 11.5933 4.8001 -0.0018 16 14 13.4873 2.7781 0.0008 17 1 13.6756 1.9403 -1.2108 18 1 14.4823 3.8805 0.0003 19 1 13.6752 1.9429 1.2142 20 16 3.9332 -0.6730 -0.0075 21 6 2.2300 -1.1239 -0.0005 22 6 1.6847 -2.5288 -0.0006 23 1 -0.3633 0.0005 -1.0277 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3634 0.8898 0.5143 26 1 3.2502 3.3757 1.2483 27 1 4.9761 3.8119 1.2477 28 1 4.4220 2.3739 2.1381 29 1 4.9751 3.8114 -1.2512 30 1 4.4203 2.3731 -2.1404 31 1 3.2491 3.3751 -1.2501 32 1 6.0026 0.9785 0.7807 33 1 6.7006 3.3035 -0.8910 34 1 6.7004 3.3036 0.8889 35 1 8.3887 1.4881 0.8901 36 1 8.3894 1.4874 -0.8899 37 1 9.1383 3.8508 -0.8913 38 1 9.1379 3.8521 0.8886 39 1 12.3638 5.3892 -0.0020 40 1 1.5529 -2.8674 -1.0282 41 1 2.3832 -3.1896 0.5129 42 1 0.7238 -2.5456 0.5136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072865728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:55 Heat of formation + Delta-G solvation = 17.786196 kcal Electronic energy + Delta-G solvation = -19659.609082 eV Core-core repulsion = 16765.466011 eV Total energy + Delta-G solvation = -2894.143071 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.18403 -38.06031 -34.37310 -33.10923 -31.89853 -29.96931 -29.46708 -27.34225 -26.50357 -25.59243 -24.44136 -22.51297 -20.27359 -19.86134 -18.57677 -17.92073 -16.35958 -15.88151 -15.35706 -14.92784 -14.78927 -14.36904 -14.00512 -13.80819 -13.43524 -13.23896 -13.15939 -13.03892 -12.62633 -12.29093 -12.23057 -12.20177 -12.02481 -11.60976 -11.51438 -11.29687 -11.15554 -11.05432 -10.78918 -10.54317 -10.47934 -9.69550 -9.58692 -9.34670 -9.21297 -9.06887 -8.64948 -8.33144 -8.29744 -5.98332 -4.00399 0.65981 1.31454 1.79707 2.70554 3.34773 3.38913 3.41595 3.72266 4.40317 4.49533 4.72092 4.77265 4.87531 5.02076 5.05157 5.14403 5.24005 5.37511 5.39554 5.54357 5.58160 5.59690 5.64717 5.74387 5.77564 5.83868 5.91110 5.92736 6.06224 6.20432 6.25403 6.36069 6.69454 6.75230 7.12211 7.21633 7.43830 7.69273 7.73612 7.84166 8.01936 8.45104 9.06577 9.63533 11.13103 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.034023 B = 0.003039 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.779705 B = 9212.105165 C = 9820.573178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.059 3.941 3 N -0.472 5.472 4 C 0.066 3.934 5 C 0.186 3.814 6 C -0.171 4.171 7 C -0.130 4.130 8 N -0.683 5.683 9 C 0.057 3.943 10 C -0.107 4.107 11 C 0.023 3.977 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 S 0.158 5.842 21 C -0.251 4.251 22 C -0.071 4.071 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.338 0.662 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.261 0.739 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.443 -10.715 0.726 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.074 4.074 3 N -0.186 5.186 4 C -0.212 4.212 5 C 0.092 3.908 6 C -0.232 4.232 7 C -0.189 4.189 8 N -0.315 5.315 9 C -0.071 4.071 10 C -0.145 4.145 11 C -0.014 4.014 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 S 0.416 5.584 21 C -0.373 4.373 22 C -0.130 4.130 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.156 0.844 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.563 -10.658 0.027 24.053 hybrid contribution 0.084 0.043 0.935 0.940 sum -21.479 -10.615 0.962 23.978 Atomic orbital electron populations 1.20320 0.87555 1.02971 1.02630 1.20092 0.97894 0.86331 1.03041 1.65990 1.04367 1.31516 1.16757 1.26881 0.93865 0.97853 1.02643 1.19332 0.86036 0.88573 0.96904 1.22476 1.03358 1.00618 0.96737 1.21829 1.02158 0.99169 0.95730 1.60773 1.00621 1.20412 1.49654 1.22258 0.91933 0.92158 1.00704 1.21638 0.91899 1.00164 1.00814 1.19047 0.92406 0.92838 0.97139 1.21214 0.91183 0.92900 1.50482 0.92725 1.25022 0.99237 0.94838 0.95377 1.69949 1.30458 1.02278 1.50930 0.86662 0.84157 0.78583 0.78622 1.20219 1.21325 1.20281 1.84193 1.04652 1.02249 1.67285 1.25834 0.96613 1.00827 1.13986 1.20183 1.00880 0.89285 1.02637 0.90909 0.90959 0.90853 0.91237 0.90746 0.92724 0.91071 0.91837 0.91608 0.84417 0.90652 0.94788 0.93624 0.92468 0.96541 0.96790 0.92975 0.90812 0.91304 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.06 36.01 0.36 -0.27 16 2 C 0.06 0.69 6.74 -84.23 -0.57 0.12 16 3 N -0.47 -6.42 10.51 -8.06 -0.08 -6.50 16 4 C 0.07 0.88 5.82 -13.46 -0.08 0.81 16 5 C 0.19 2.49 0.93 -132.76 -0.12 2.36 16 6 C -0.17 -2.16 8.21 37.16 0.30 -1.85 16 7 C -0.13 -1.70 8.22 37.15 0.31 -1.39 16 8 N -0.68 -9.90 5.56 -101.14 -0.56 -10.46 16 9 C 0.06 0.95 4.90 -3.82 -0.02 0.93 16 10 C -0.11 -2.18 5.41 -26.73 -0.14 -2.32 16 11 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 12 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 16 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 S 0.16 1.90 21.94 -107.50 -2.36 -0.46 16 21 C -0.25 -2.71 6.59 -35.92 -0.24 -2.95 16 22 C -0.07 -0.52 10.10 36.00 0.36 -0.15 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.45 6.72 -51.93 -0.35 0.10 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.94 6.40 -51.93 -0.33 0.61 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.92 6.40 -51.93 -0.33 0.58 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.34 4.70 8.15 -39.29 -0.32 4.38 16 33 H 0.08 1.27 6.30 -51.93 -0.33 0.94 16 34 H 0.03 0.56 6.30 -51.93 -0.33 0.23 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.44 6.76 -51.93 -0.35 0.09 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -30.90 349.47 -9.36 -40.27 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.95 Total: -0.73 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -0.38 Total: -17.81 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.09 Total: -43.29 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.36 Total: -0.46 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.90 -9.36 -40.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072865728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.052 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds