Wall clock time and date at job start Tue Mar 31 2020 06:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31778 * 122.74764 * 2 1 4 4 C 1.29028 * 117.12837 * 180.02562 * 3 2 1 5 5 C 1.50699 * 124.91991 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47078 * 60.00024 * 5 4 3 7 7 C 1.52992 * 109.46956 * 299.99712 * 5 4 3 8 8 N 1.46906 * 109.46750 * 179.97438 * 5 4 3 9 9 C 1.46898 * 110.99498 * 180.02562 * 8 5 4 10 10 C 1.53006 * 109.47138 * 179.97438 * 9 8 5 11 11 C 1.52996 * 109.47440 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47331 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00090 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00034 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00193 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99791 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47189 * 60.00745 * 16 14 12 18 18 H 1.48504 * 109.46955 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47368 * 300.00394 * 16 14 12 20 20 S 1.70982 * 110.16088 * 0.22930 * 4 3 2 21 21 C 1.33636 * 122.75111 * 180.02562 * 2 1 3 22 22 C 1.50697 * 126.03648 * 359.97438 * 21 2 1 23 23 H 1.08998 * 109.46986 * 89.97418 * 1 2 3 24 24 H 1.09001 * 109.46725 * 209.97412 * 1 2 3 25 25 H 1.09003 * 109.47314 * 329.97289 * 1 2 3 26 26 H 1.09002 * 109.47153 * 299.99793 * 6 5 4 27 27 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 28 28 H 1.09004 * 109.47261 * 59.99965 * 6 5 4 29 29 H 1.09001 * 109.47066 * 180.02562 * 7 5 4 30 30 H 1.08996 * 109.47747 * 299.99900 * 7 5 4 31 31 H 1.09002 * 109.47103 * 60.00312 * 7 5 4 32 32 H 1.00904 * 111.00081 * 303.94977 * 8 5 4 33 33 H 1.08995 * 109.47296 * 299.99915 * 9 8 5 34 34 H 1.08997 * 109.47334 * 60.00216 * 9 8 5 35 35 H 1.09004 * 109.46866 * 299.99877 * 10 9 8 36 36 H 1.08997 * 109.46770 * 59.99946 * 10 9 8 37 37 H 1.08999 * 109.46939 * 300.00567 * 11 10 9 38 38 H 1.09000 * 109.46858 * 59.99786 * 11 10 9 39 39 H 0.96997 * 120.00281 * 179.97438 * 15 14 12 40 40 H 1.08997 * 109.47668 * 90.00335 * 22 21 2 41 41 H 1.09007 * 109.46999 * 210.00085 * 22 21 2 42 42 H 1.08994 * 109.47238 * 329.99893 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5039 0.9820 -0.0005 5 6 4.4834 2.1272 -0.0012 6 6 4.2673 2.9838 1.2480 7 6 4.2663 2.9833 -1.2505 8 7 5.8543 1.5991 -0.0010 9 6 6.8385 2.6896 -0.0010 10 6 8.2511 2.1017 -0.0002 11 6 9.2762 3.2374 -0.0009 12 6 10.6675 2.6584 0.0006 13 1 10.8066 1.5874 0.0014 14 6 11.7627 3.4959 -0.0002 15 7 11.5933 4.8001 -0.0018 16 14 13.4873 2.7781 0.0008 17 1 13.6756 1.9403 -1.2108 18 1 14.4823 3.8805 0.0003 19 1 13.6752 1.9429 1.2142 20 16 3.9332 -0.6730 -0.0075 21 6 2.2300 -1.1239 -0.0005 22 6 1.6847 -2.5288 -0.0006 23 1 -0.3633 0.0005 -1.0277 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3634 0.8898 0.5143 26 1 3.2502 3.3757 1.2483 27 1 4.9761 3.8119 1.2477 28 1 4.4220 2.3739 2.1381 29 1 4.9751 3.8114 -1.2512 30 1 4.4203 2.3731 -2.1404 31 1 3.2491 3.3751 -1.2501 32 1 6.0026 0.9785 0.7807 33 1 6.7006 3.3035 -0.8910 34 1 6.7004 3.3036 0.8889 35 1 8.3887 1.4881 0.8901 36 1 8.3894 1.4874 -0.8899 37 1 9.1383 3.8508 -0.8913 38 1 9.1379 3.8521 0.8886 39 1 12.3638 5.3892 -0.0020 40 1 1.5529 -2.8674 -1.0282 41 1 2.3832 -3.1896 0.5129 42 1 0.7238 -2.5456 0.5136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072865728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:54 Heat of formation + Delta-G solvation = -0.887870 kcal Electronic energy + Delta-G solvation = -19660.418850 eV Core-core repulsion = 16765.466011 eV Total energy + Delta-G solvation = -2894.952840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.10617 -39.19048 -36.08071 -34.46435 -33.36171 -31.19158 -30.41688 -28.42136 -28.03039 -26.64295 -25.53605 -24.10047 -21.97320 -20.95069 -19.47821 -18.86987 -18.43709 -17.08266 -16.57039 -16.28528 -16.13708 -15.78671 -15.12400 -14.81774 -14.52775 -14.22016 -13.98527 -13.93032 -13.81000 -13.72153 -13.64015 -13.19209 -12.95210 -12.88471 -12.82411 -12.68851 -12.57609 -12.38241 -12.29524 -12.07571 -11.85243 -11.46793 -11.36195 -11.11914 -10.54846 -10.53052 -10.12271 -9.58588 -9.42109 -8.18638 -6.29219 -0.24164 0.42497 0.89444 1.40869 1.43812 1.51653 1.80962 2.41746 2.68950 3.14663 3.33786 3.83324 3.95641 4.00721 4.10004 4.19982 4.22924 4.40320 4.57813 4.60619 4.63291 4.68891 4.70145 4.78547 4.81424 4.85321 4.93749 4.97512 5.04531 5.05345 5.07505 5.17642 5.23239 5.29123 5.45912 5.54338 5.77488 5.87951 5.92503 6.25156 6.28830 6.82005 6.87763 7.39837 8.93051 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.034023 B = 0.003039 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.779705 B = 9212.105165 C = 9820.573178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.035 3.965 3 N -0.487 5.487 4 C 0.045 3.955 5 C 0.188 3.812 6 C -0.166 4.166 7 C -0.126 4.126 8 N -0.680 5.680 9 C 0.072 3.928 10 C -0.092 4.092 11 C 0.027 3.973 12 C -0.543 4.543 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.963 3.037 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.267 1.267 20 S 0.148 5.852 21 C -0.241 4.241 22 C -0.073 4.073 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.342 0.658 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.050 0.950 36 H 0.053 0.947 37 H -0.007 1.007 38 H -0.008 1.008 39 H 0.263 0.737 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.268 -12.612 0.919 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 N -0.202 5.202 4 C -0.233 4.233 5 C 0.094 3.906 6 C -0.226 4.226 7 C -0.185 4.185 8 N -0.312 5.312 9 C -0.057 4.057 10 C -0.130 4.130 11 C -0.011 4.011 12 C -0.581 4.581 13 H 0.077 0.923 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.788 3.212 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.192 1.192 20 S 0.406 5.594 21 C -0.362 4.362 22 C -0.131 4.131 23 H 0.099 0.901 24 H 0.114 0.886 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.161 0.839 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.011 0.989 38 H 0.011 0.989 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.409 -12.567 0.222 25.694 hybrid contribution 0.259 0.595 0.868 1.084 sum -22.150 -11.972 1.090 25.202 Atomic orbital electron populations 1.20414 0.85326 1.03956 1.03460 1.20633 0.99412 0.86082 1.03548 1.65995 1.04545 1.32846 1.16777 1.26755 0.93975 0.98295 1.04271 1.19288 0.85233 0.88947 0.97177 1.22407 1.03370 1.00348 0.96465 1.21789 1.02389 0.98936 0.95405 1.60653 1.00926 1.19616 1.50031 1.21950 0.90509 0.92444 1.00770 1.21375 0.92671 0.98173 1.00806 1.18944 0.93353 0.93903 0.94876 1.21680 0.92674 0.93332 1.50429 0.92272 1.25966 1.03885 0.95178 0.94798 1.70082 1.31840 1.03714 1.51756 0.85529 0.78547 0.77972 0.79181 1.19234 1.20858 1.19167 1.84150 1.06302 1.01607 1.67372 1.26287 0.95438 1.02318 1.12136 1.20360 1.01864 0.87124 1.03799 0.90079 0.88611 0.91261 0.90996 0.91057 0.92595 0.91251 0.92580 0.91114 0.83890 0.90914 0.94542 0.93099 0.92845 0.98903 0.98931 0.92792 0.89607 0.90579 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.06 71.24 0.72 -0.33 16 2 C 0.03 0.76 6.74 41.52 0.28 1.04 16 3 N -0.49 -12.82 10.51 -179.40 -1.89 -14.70 16 4 C 0.04 1.18 5.82 88.52 0.51 1.69 16 5 C 0.19 4.95 0.93 2.78 0.00 4.95 16 6 C -0.17 -4.10 8.21 71.98 0.59 -3.51 16 7 C -0.13 -3.28 8.22 71.98 0.59 -2.69 16 8 N -0.68 -19.45 5.56 -473.91 -2.64 -22.09 16 9 C 0.07 2.39 4.90 86.31 0.42 2.81 16 10 C -0.09 -3.77 5.41 30.60 0.17 -3.60 16 11 C 0.03 1.42 4.97 29.84 0.15 1.56 16 12 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 13 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 14 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 15 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 16 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 S 0.15 3.42 21.94 -56.49 -1.24 2.18 16 21 C -0.24 -4.72 6.59 24.64 0.16 -4.56 16 22 C -0.07 -0.85 10.10 71.24 0.72 -0.13 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.10 0.89 6.72 -2.39 -0.02 0.88 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.07 1.79 6.40 -2.39 -0.02 1.77 16 28 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.07 1.79 6.40 -2.39 -0.02 1.78 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.34 9.31 8.15 -89.69 -0.73 8.58 16 33 H 0.07 2.48 6.30 -2.39 -0.02 2.46 16 34 H 0.04 1.20 6.30 -2.39 -0.02 1.19 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.10 0.76 6.76 -2.39 -0.02 0.74 16 Total: -1.00 -66.18 349.47 1.83 -64.35 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.27 Total: 13.84 kcal Atomic # 6 Polarization: -38.27 SS G_CDS: 5.01 Total: -33.26 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -4.24 Total: -93.67 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.24 Total: 2.18 kcal Total: -66.18 1.83 -64.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072865728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.466 kcal (2) G-P(sol) polarization free energy of solvation -66.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds