Wall clock time and date at job start Tue Mar 31 2020 07:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47497 * 2 1 4 4 C 1.52997 * 109.47340 * 120.00244 * 2 1 3 5 5 H 1.09005 * 109.78815 * 305.49686 * 4 2 1 6 6 C 1.53242 * 109.63752 * 184.99910 * 4 2 1 7 7 N 1.46463 * 109.86417 * 178.28935 * 6 4 2 8 8 C 1.46906 * 111.00094 * 197.76387 * 7 6 4 9 9 C 1.52995 * 109.47283 * 300.06572 * 8 7 6 10 10 H 1.09002 * 109.46788 * 54.99816 * 9 8 7 11 11 C 1.47199 * 109.47243 * 295.00155 * 9 8 7 12 12 N 6.40803 * 140.69988 * 159.03468 * 2 1 3 13 13 C 1.52999 * 109.47019 * 174.99737 * 9 8 7 14 14 C 1.50702 * 109.47042 * 185.00091 * 13 9 8 15 15 H 1.08006 * 119.99984 * 0.02562 * 14 13 9 16 16 C 1.37875 * 119.99960 * 180.02562 * 14 13 9 17 17 N 1.31515 * 120.00197 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00025 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47013 * 59.99278 * 18 16 14 20 20 H 1.48492 * 109.47214 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46790 * 299.99923 * 18 16 14 22 22 C 1.46468 * 112.56001 * 72.65845 * 7 6 4 23 23 C 1.53249 * 109.79284 * 287.38393 * 22 7 6 24 24 S 1.81733 * 108.58734 * 62.03797 * 23 22 7 25 25 H 1.08994 * 109.47140 * 299.99917 * 1 2 3 26 26 H 1.09003 * 109.46848 * 60.00161 * 1 2 3 27 27 H 1.08997 * 109.47317 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46782 * 239.99800 * 2 1 3 29 29 H 1.08996 * 109.47498 * 59.99532 * 3 2 1 30 30 H 1.08993 * 109.47624 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46940 * 299.99782 * 3 2 1 32 32 H 1.09003 * 109.40485 * 58.16699 * 6 4 2 33 33 H 1.09007 * 109.40279 * 298.41191 * 6 4 2 34 34 H 1.09001 * 109.46599 * 60.06669 * 8 7 6 35 35 H 1.08996 * 109.46975 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.47151 * 304.99963 * 13 9 8 37 37 H 1.08996 * 109.47234 * 65.00142 * 13 9 8 38 38 H 0.97000 * 119.99767 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.40716 * 47.46253 * 22 7 6 40 40 H 1.08997 * 109.41022 * 167.30457 * 22 7 6 41 41 H 1.09004 * 109.63147 * 181.67220 * 23 22 7 42 42 H 1.09003 * 109.63303 * 302.25419 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6015 -0.2714 2.1400 6 6 3.5672 -0.6155 1.3174 7 7 4.0576 -1.2693 2.5328 8 6 5.4255 -0.8365 2.8483 9 6 6.3547 -1.1961 1.6872 10 1 5.9652 -0.7673 0.7639 11 6 6.4303 -2.6602 1.5545 12 7 6.4887 -3.7900 1.4522 13 6 7.7521 -0.6358 1.9600 14 6 8.6346 -0.8827 0.7636 15 1 8.2383 -1.3883 -0.1046 16 6 9.9479 -0.4632 0.7775 17 7 10.4303 0.1529 1.8345 18 14 11.0417 -0.7685 -0.7058 19 1 10.4621 -0.0945 -1.8953 20 1 12.3979 -0.2248 -0.4410 21 1 11.1341 -2.2287 -0.9603 22 6 3.9732 -2.7297 2.4584 23 6 2.5101 -3.1714 2.5715 24 16 1.5863 -2.4809 1.1670 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 3.8573 0.4352 1.3292 33 1 4.0033 -1.1006 0.4440 34 1 5.4385 0.2423 3.0034 35 1 5.7651 -1.3375 3.7547 36 1 7.6838 0.4360 2.1461 37 1 8.1775 -1.1299 2.8334 38 1 11.3544 0.4477 1.8443 39 1 4.3810 -3.0680 1.5058 40 1 4.5479 -3.1678 3.2744 41 1 2.4530 -4.2596 2.5456 42 1 2.0872 -2.8019 3.5057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076065291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:24 Heat of formation + Delta-G solvation = 13.512120 kcal Electronic energy + Delta-G solvation = -20607.594795 eV Core-core repulsion = 17713.266386 eV Total energy + Delta-G solvation = -2894.328409 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.31877 -36.82649 -35.35579 -33.93798 -32.17162 -30.55497 -29.17255 -27.36616 -26.15494 -23.86805 -23.64890 -22.01796 -20.60442 -20.22680 -17.23945 -16.70222 -16.50180 -15.69795 -15.37374 -14.87146 -14.58077 -14.15602 -14.02119 -13.95050 -13.61881 -13.39890 -12.77479 -12.58751 -12.45953 -12.33956 -12.16661 -12.08821 -11.79013 -11.58195 -11.39676 -11.21302 -11.09585 -11.06795 -10.84551 -10.77302 -10.64224 -10.52933 -10.31605 -9.79326 -9.60794 -9.40206 -8.51043 -8.21721 -7.64652 -6.15131 -4.19198 1.75332 2.52498 3.26599 3.31373 3.34809 3.43522 3.49341 3.78993 4.35512 4.58754 4.62800 4.66360 4.88196 4.90205 5.13012 5.17259 5.22643 5.22875 5.24938 5.43156 5.49783 5.51277 5.55009 5.63059 5.70008 5.72023 5.77043 5.84697 5.92648 5.96872 6.00740 6.16597 6.19619 6.28830 6.34959 7.00942 7.05499 7.34242 7.43697 7.78478 8.15964 8.27722 8.84658 9.46822 10.95330 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020986 B = 0.004474 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.927730 B = 6257.264354 C = 6856.697278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.148 4.148 4 C -0.032 4.032 5 H 0.095 0.905 6 C 0.051 3.949 7 N -0.550 5.550 8 C 0.067 3.933 9 C -0.033 4.033 10 H 0.101 0.899 11 C 0.242 3.758 12 N -0.471 5.471 13 C 0.035 3.965 14 C -0.530 4.530 15 H 0.054 0.946 16 C 0.065 3.935 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.277 1.277 22 C 0.043 3.957 23 C -0.074 4.074 24 S -0.275 6.275 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.026 0.974 38 H 0.264 0.736 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.240 2.320 0.611 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 C -0.206 4.206 4 C -0.162 4.162 5 H 0.113 0.887 6 C -0.078 4.078 7 N -0.273 5.273 8 C -0.061 4.061 9 C -0.057 4.057 10 H 0.119 0.881 11 C -0.074 4.074 12 N -0.148 5.148 13 C -0.003 4.003 14 C -0.568 4.568 15 H 0.072 0.928 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.086 4.086 23 C -0.223 4.223 24 S -0.047 6.047 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.984 0.272 0.201 18.987 hybrid contribution 2.103 0.506 -0.539 2.229 sum -16.882 0.778 -0.338 16.903 Atomic orbital electron populations 1.21861 0.94523 1.02325 1.01703 1.20958 0.96287 0.96113 0.96391 1.21930 1.01810 0.94830 1.02074 1.23357 0.98045 0.92867 1.01888 0.88682 1.22444 0.92872 1.00741 0.91782 1.61406 1.23385 1.06790 1.35695 1.22404 0.84118 1.02387 0.97216 1.19970 1.02491 0.82459 1.00749 0.88141 1.29067 0.90652 0.95151 0.92519 1.81071 1.11152 1.13285 1.09303 1.19118 0.86306 0.96900 0.97994 1.21090 0.95944 1.38585 1.01182 0.92774 1.24937 0.97976 0.94787 0.96072 1.69921 1.15534 1.38882 1.28525 0.86669 0.79718 0.78727 0.83081 1.20023 1.21083 1.20246 1.22551 0.95025 0.88343 1.02713 1.23481 0.97097 1.02941 0.98739 1.86775 1.65500 1.09036 1.43432 0.92562 0.92564 0.91922 0.90320 0.92330 0.91694 0.92265 0.88714 0.93000 0.88401 0.89885 0.94229 0.95566 0.92662 0.92140 0.89918 0.87967 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.03 37.16 0.34 -0.95 16 2 C -0.08 -0.74 2.51 -90.63 -0.23 -0.97 16 3 C -0.15 -1.24 8.71 37.15 0.32 -0.91 16 4 C -0.03 -0.36 2.35 -26.61 -0.06 -0.42 16 5 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 6 C 0.05 0.61 3.32 -3.94 -0.01 0.60 16 7 N -0.55 -7.16 4.58 -235.04 -1.08 -8.23 16 8 C 0.07 0.94 4.91 -3.82 -0.02 0.92 16 9 C -0.03 -0.59 2.00 -93.41 -0.19 -0.78 16 10 H 0.10 1.70 6.56 -51.93 -0.34 1.36 16 11 C 0.24 4.78 10.32 -20.76 -0.21 4.57 16 12 N -0.47 -10.00 17.68 42.15 0.75 -9.26 16 13 C 0.04 0.80 4.42 -27.88 -0.12 0.67 16 14 C -0.53 -13.88 8.60 -34.44 -0.30 -14.18 16 15 H 0.05 1.42 7.59 -52.48 -0.40 1.02 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.04 0.60 3.75 -3.93 -0.01 0.59 16 23 C -0.07 -0.90 6.67 37.29 0.25 -0.65 16 24 S -0.28 -3.46 20.65 -107.50 -2.22 -5.68 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.61 7.19 -51.93 -0.37 0.24 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.57 6.32 -51.93 -0.33 0.24 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 1.03 6.02 -51.93 -0.31 0.72 16 33 H 0.05 0.71 6.99 -51.92 -0.36 0.35 16 34 H 0.10 1.23 8.07 -51.93 -0.42 0.81 16 35 H 0.08 1.17 7.93 -51.93 -0.41 0.76 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.06 0.98 5.20 -51.93 -0.27 0.71 16 40 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 41 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 338.29 15.07 5.10 5.10 Total: -1.00 -28.67 338.29 -9.06 -37.73 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.97 Total: -1.51 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -0.35 Total: -9.84 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.40 Total: -41.85 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.22 Total: -5.68 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.67 -9.06 -37.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076065291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.238 kcal (2) G-P(sol) polarization free energy of solvation -28.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds