Wall clock time and date at job start Tue Mar 31 2020 07:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47497 * 2 1 4 4 C 1.52997 * 109.47340 * 120.00244 * 2 1 3 5 5 H 1.09005 * 109.78815 * 305.49686 * 4 2 1 6 6 C 1.53242 * 109.63752 * 184.99910 * 4 2 1 7 7 N 1.46463 * 109.86417 * 178.28935 * 6 4 2 8 8 C 1.46906 * 111.00094 * 197.76387 * 7 6 4 9 9 C 1.52995 * 109.47283 * 300.06572 * 8 7 6 10 10 H 1.09002 * 109.46788 * 54.99816 * 9 8 7 11 11 C 1.47199 * 109.47243 * 295.00155 * 9 8 7 12 12 N 6.40803 * 140.69988 * 159.03468 * 2 1 3 13 13 C 1.52999 * 109.47019 * 174.99737 * 9 8 7 14 14 C 1.50702 * 109.47042 * 185.00091 * 13 9 8 15 15 H 1.08006 * 119.99984 * 0.02562 * 14 13 9 16 16 C 1.37875 * 119.99960 * 180.02562 * 14 13 9 17 17 N 1.31515 * 120.00197 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00025 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47013 * 59.99278 * 18 16 14 20 20 H 1.48492 * 109.47214 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46790 * 299.99923 * 18 16 14 22 22 C 1.46468 * 112.56001 * 72.65845 * 7 6 4 23 23 C 1.53249 * 109.79284 * 287.38393 * 22 7 6 24 24 S 1.81733 * 108.58734 * 62.03797 * 23 22 7 25 25 H 1.08994 * 109.47140 * 299.99917 * 1 2 3 26 26 H 1.09003 * 109.46848 * 60.00161 * 1 2 3 27 27 H 1.08997 * 109.47317 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46782 * 239.99800 * 2 1 3 29 29 H 1.08996 * 109.47498 * 59.99532 * 3 2 1 30 30 H 1.08993 * 109.47624 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46940 * 299.99782 * 3 2 1 32 32 H 1.09003 * 109.40485 * 58.16699 * 6 4 2 33 33 H 1.09007 * 109.40279 * 298.41191 * 6 4 2 34 34 H 1.09001 * 109.46599 * 60.06669 * 8 7 6 35 35 H 1.08996 * 109.46975 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.47151 * 304.99963 * 13 9 8 37 37 H 1.08996 * 109.47234 * 65.00142 * 13 9 8 38 38 H 0.97000 * 119.99767 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.40716 * 47.46253 * 22 7 6 40 40 H 1.08997 * 109.41022 * 167.30457 * 22 7 6 41 41 H 1.09004 * 109.63147 * 181.67220 * 23 22 7 42 42 H 1.09003 * 109.63303 * 302.25419 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6015 -0.2714 2.1400 6 6 3.5672 -0.6155 1.3174 7 7 4.0576 -1.2693 2.5328 8 6 5.4255 -0.8365 2.8483 9 6 6.3547 -1.1961 1.6872 10 1 5.9652 -0.7673 0.7639 11 6 6.4303 -2.6602 1.5545 12 7 6.4887 -3.7900 1.4522 13 6 7.7521 -0.6358 1.9600 14 6 8.6346 -0.8827 0.7636 15 1 8.2383 -1.3883 -0.1046 16 6 9.9479 -0.4632 0.7775 17 7 10.4303 0.1529 1.8345 18 14 11.0417 -0.7685 -0.7058 19 1 10.4621 -0.0945 -1.8953 20 1 12.3979 -0.2248 -0.4410 21 1 11.1341 -2.2287 -0.9603 22 6 3.9732 -2.7297 2.4584 23 6 2.5101 -3.1714 2.5715 24 16 1.5863 -2.4809 1.1670 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 3.8573 0.4352 1.3292 33 1 4.0033 -1.1006 0.4440 34 1 5.4385 0.2423 3.0034 35 1 5.7651 -1.3375 3.7547 36 1 7.6838 0.4360 2.1461 37 1 8.1775 -1.1299 2.8334 38 1 11.3544 0.4477 1.8443 39 1 4.3810 -3.0680 1.5058 40 1 4.5479 -3.1678 3.2744 41 1 2.4530 -4.2596 2.5456 42 1 2.0872 -2.8019 3.5057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076065291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:23 Heat of formation + Delta-G solvation = -2.059999 kcal Electronic energy + Delta-G solvation = -20608.270053 eV Core-core repulsion = 17713.266386 eV Total energy + Delta-G solvation = -2895.003667 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.51153 -37.91153 -36.61005 -35.69149 -33.85535 -31.67026 -30.36083 -28.05776 -27.77853 -24.99431 -24.77364 -23.81580 -21.72484 -21.01889 -18.66858 -18.31992 -17.84475 -17.00728 -16.49427 -16.31341 -15.88958 -15.29582 -15.00384 -14.98861 -14.85623 -14.52755 -14.23518 -13.94728 -13.74545 -13.63342 -13.39502 -13.22087 -13.04089 -12.87588 -12.63805 -12.54264 -12.50879 -12.41574 -12.19518 -11.98098 -11.79849 -11.59581 -11.49778 -11.44800 -11.33177 -10.57553 -10.56695 -9.40821 -8.64872 -8.21554 -6.30478 0.80834 1.38267 1.39990 1.46832 1.57957 1.86407 1.89083 2.38776 2.70923 3.12322 3.17887 3.70555 3.74825 3.90462 4.05136 4.08938 4.11812 4.22758 4.28099 4.33977 4.45926 4.55754 4.67391 4.71912 4.74295 4.77772 4.83523 4.89774 4.93075 5.06453 5.07214 5.10994 5.29402 5.42777 5.47116 5.49712 5.57713 5.75330 5.87115 5.98220 6.16966 6.67934 6.83093 7.38308 8.88280 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020986 B = 0.004474 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.927730 B = 6257.264354 C = 6856.697278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C -0.145 4.145 4 C -0.020 4.020 5 H 0.102 0.898 6 C 0.049 3.951 7 N -0.539 5.539 8 C 0.076 3.924 9 C -0.021 4.021 10 H 0.112 0.888 11 C 0.250 3.750 12 N -0.500 5.500 13 C 0.042 3.958 14 C -0.542 4.542 15 H 0.048 0.952 16 C 0.016 3.984 17 N -0.920 5.920 18 Si 0.943 3.057 19 H -0.263 1.263 20 H -0.280 1.280 21 H -0.283 1.283 22 C 0.047 3.953 23 C -0.066 4.066 24 S -0.303 6.303 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.035 0.965 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.002 0.998 38 H 0.265 0.735 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.356 3.515 0.403 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 C -0.203 4.203 4 C -0.149 4.149 5 H 0.120 0.880 6 C -0.080 4.080 7 N -0.261 5.261 8 C -0.053 4.053 9 C -0.045 4.045 10 H 0.130 0.870 11 C -0.066 4.066 12 N -0.178 5.178 13 C 0.003 3.997 14 C -0.580 4.580 15 H 0.066 0.934 16 C -0.183 4.183 17 N -0.559 5.559 18 Si 0.769 3.231 19 H -0.188 1.188 20 H -0.205 1.205 21 H -0.209 1.209 22 C -0.083 4.083 23 C -0.215 4.215 24 S -0.075 6.075 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.131 0.869 33 H 0.053 0.947 34 H 0.139 0.861 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.021 0.979 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.118 1.467 -0.016 20.171 hybrid contribution 2.429 0.120 -0.490 2.481 sum -17.688 1.587 -0.506 17.767 Atomic orbital electron populations 1.21822 0.93764 1.01768 1.02649 1.20958 0.96882 0.96631 0.95052 1.21915 1.01535 0.93854 1.03042 1.23380 0.97140 0.91484 1.02908 0.88014 1.22532 0.93572 1.01370 0.90501 1.61486 1.22261 1.06258 1.36133 1.22400 0.83706 1.03775 0.95446 1.19956 1.00710 0.80861 1.02938 0.87040 1.29486 0.89833 0.95607 0.91638 1.81062 1.12032 1.14309 1.10403 1.18939 0.88247 0.96839 0.95639 1.21494 0.96679 1.37780 1.02094 0.93374 1.25644 0.99414 0.94895 0.98355 1.70006 1.15880 1.40019 1.30042 0.85827 0.78441 0.78099 0.80693 1.18816 1.20522 1.20923 1.22461 0.96011 0.88823 1.01032 1.23433 0.95735 1.03309 0.99006 1.86921 1.65610 1.10969 1.43996 0.91768 0.91481 0.93201 0.91596 0.91372 0.92061 0.91354 0.86910 0.94717 0.86084 0.89841 0.94130 0.97927 0.92620 0.94622 0.90613 0.87544 0.88077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.03 71.98 0.65 -1.57 16 2 C -0.08 -1.30 2.51 -10.80 -0.03 -1.32 16 3 C -0.14 -2.04 8.71 71.98 0.63 -1.42 16 4 C -0.02 -0.41 2.35 30.67 0.07 -0.33 16 5 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 6 C 0.05 1.09 3.32 86.47 0.29 1.38 16 7 N -0.54 -13.06 4.58 -897.54 -4.11 -17.18 16 8 C 0.08 1.98 4.91 86.30 0.42 2.40 16 9 C -0.02 -0.74 2.00 -12.60 -0.03 -0.76 16 10 H 0.11 3.63 6.56 -2.39 -0.02 3.61 16 11 C 0.25 9.84 10.32 89.44 0.92 10.76 16 12 N -0.50 -21.41 17.68 20.01 0.35 -21.06 16 13 C 0.04 1.88 4.42 29.85 0.13 2.01 16 14 C -0.54 -28.30 8.60 25.60 0.22 -28.08 16 15 H 0.05 2.52 7.59 -2.91 -0.02 2.49 16 16 C 0.02 0.89 5.46 84.65 0.46 1.35 16 17 N -0.92 -51.86 13.29 21.45 0.28 -51.57 16 18 Si 0.94 42.96 29.54 68.60 2.03 44.99 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 C 0.05 1.26 3.75 86.47 0.32 1.58 16 23 C -0.07 -1.54 6.67 72.07 0.48 -1.06 16 24 S -0.30 -7.32 20.65 -56.49 -1.17 -8.48 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.91 7.19 -2.39 -0.02 0.89 16 28 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.91 6.32 -2.39 -0.02 0.90 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 2.13 6.02 -2.39 -0.01 2.11 16 33 H 0.03 0.91 6.99 -2.38 -0.02 0.89 16 34 H 0.12 2.68 8.07 -2.39 -0.02 2.66 16 35 H 0.08 2.22 7.93 -2.39 -0.02 2.21 16 36 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.00 0.11 8.14 -2.39 -0.02 0.10 16 38 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 39 H 0.04 1.16 5.20 -2.39 -0.01 1.14 16 40 H 0.08 2.14 7.58 -2.39 -0.02 2.13 16 41 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -60.62 338.29 2.92 -57.70 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.99 Total: 10.65 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 4.55 Total: -15.05 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -3.48 Total: -89.81 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -7.32 SS G_CDS: -1.17 Total: -8.48 kcal Total: -60.62 2.92 -57.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076065291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.642 kcal (2) G-P(sol) polarization free energy of solvation -60.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds