Wall clock time and date at job start Tue Mar 31 2020 07:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46923 * 2 1 4 4 C 1.53000 * 109.46905 * 119.99693 * 2 1 3 5 5 H 1.09001 * 109.63101 * 59.61079 * 4 2 1 6 6 C 1.53256 * 109.62560 * 179.97438 * 4 2 1 7 7 N 1.46475 * 109.85294 * 181.71013 * 6 4 2 8 8 C 1.46904 * 110.99520 * 162.23836 * 7 6 4 9 9 C 1.52991 * 109.47339 * 76.25436 * 8 7 6 10 10 H 1.08997 * 109.47601 * 53.41709 * 9 8 7 11 11 C 1.47206 * 109.47336 * 293.41471 * 9 8 7 12 12 N 4.58462 * 164.28739 * 26.28852 * 2 1 3 13 13 C 1.53005 * 109.47212 * 173.42258 * 9 8 7 14 14 C 1.50702 * 109.47236 * 185.00263 * 13 9 8 15 15 H 1.07998 * 119.99895 * 359.97438 * 14 13 9 16 16 C 1.37877 * 119.99931 * 179.97438 * 14 13 9 17 17 N 1.31516 * 119.99834 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00076 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47260 * 179.97438 * 18 16 14 20 20 H 1.48505 * 109.47040 * 59.99981 * 18 16 14 21 21 H 1.48500 * 109.47031 * 300.00328 * 18 16 14 22 22 C 1.46465 * 112.55856 * 287.34032 * 7 6 4 23 23 C 1.53254 * 109.85962 * 72.66366 * 22 7 6 24 24 S 1.81892 * 109.63378 * 299.01082 * 4 2 1 25 25 H 1.09005 * 109.46912 * 300.00043 * 1 2 3 26 26 H 1.08993 * 109.46826 * 59.99794 * 1 2 3 27 27 H 1.08995 * 109.46806 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47128 * 239.99738 * 2 1 3 29 29 H 1.09001 * 109.47309 * 299.99528 * 3 2 1 30 30 H 1.08996 * 109.47432 * 59.99924 * 3 2 1 31 31 H 1.09007 * 109.46818 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.40643 * 61.59692 * 6 4 2 33 33 H 1.08996 * 109.34336 * 301.78649 * 6 4 2 34 34 H 1.09008 * 109.46748 * 316.24947 * 8 7 6 35 35 H 1.08997 * 109.47061 * 196.25746 * 8 7 6 36 36 H 1.08999 * 109.47033 * 64.99742 * 13 9 8 37 37 H 1.09008 * 109.46776 * 304.99871 * 13 9 8 38 38 H 0.96997 * 120.00187 * 359.97438 * 17 16 14 39 39 H 1.09003 * 109.40404 * 192.78029 * 22 7 6 40 40 H 1.09000 * 109.41167 * 312.54152 * 22 7 6 41 41 H 1.08993 * 109.62923 * 178.28739 * 23 22 7 42 42 H 1.09004 * 109.79436 * 57.79542 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6724 -1.7473 1.2555 6 6 3.5726 -0.7238 1.2526 7 7 4.0662 -1.4486 2.4258 8 6 5.4732 -1.8341 2.2528 9 6 6.3668 -0.6099 2.4617 10 1 6.1345 -0.1501 3.4223 11 6 6.1282 0.3618 1.3820 12 7 5.9434 1.1132 0.5499 13 6 7.8347 -1.0411 2.4443 14 6 8.7096 0.1415 2.7718 15 1 8.2633 1.1044 2.9718 16 6 10.0797 -0.0058 2.8160 17 7 10.6231 -1.1785 2.5729 18 14 11.1642 1.4602 3.2212 19 1 12.5888 1.0414 3.2056 20 1 10.8152 1.9765 4.5691 21 1 10.9505 2.5280 2.2115 22 6 3.8765 -0.6994 3.6700 23 6 2.3925 -0.6928 4.0526 24 16 1.4604 0.1498 2.7372 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6768 1.9564 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1301 1.4425 -0.0005 32 1 3.9365 0.3032 1.2818 33 1 3.9347 -1.2109 0.3472 34 1 5.6217 -2.2249 1.2461 35 1 5.7320 -2.6015 2.9823 36 1 8.0906 -1.4194 1.4546 37 1 7.9918 -1.8254 3.1850 38 1 10.0600 -1.9399 2.3628 39 1 4.4539 -1.1684 4.4668 40 1 4.2193 0.3260 3.5313 41 1 2.2596 -0.1605 4.9944 42 1 2.0337 -1.7168 4.1569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076065293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:28 Heat of formation + Delta-G solvation = 9.122130 kcal Electronic energy + Delta-G solvation = -20758.610070 eV Core-core repulsion = 17864.091296 eV Total energy + Delta-G solvation = -2894.518773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.35547 -36.72240 -35.64428 -34.08257 -32.13528 -30.75609 -29.03307 -27.26267 -25.80670 -23.78985 -23.65411 -22.29109 -20.65292 -20.35046 -17.26782 -16.74045 -16.63751 -15.83062 -15.49025 -15.13133 -14.67207 -14.15331 -13.84822 -13.69665 -13.52050 -13.24157 -12.94904 -12.72758 -12.56847 -12.36288 -12.20200 -12.01032 -11.85689 -11.62887 -11.41684 -11.36925 -11.17056 -11.09959 -10.92001 -10.75682 -10.58552 -10.50853 -10.20340 -10.02333 -9.61117 -8.86738 -8.46964 -8.23410 -7.63271 -6.49206 -4.21335 1.72764 2.49647 3.35536 3.39058 3.40146 3.41923 3.58765 3.72697 4.44864 4.52993 4.61150 4.65966 4.82535 4.87461 5.05920 5.12658 5.20721 5.28018 5.29028 5.36776 5.42430 5.48981 5.57396 5.59505 5.64995 5.75781 5.80867 5.86374 5.87809 5.92949 6.00418 6.15608 6.19437 6.20756 6.33781 6.93225 6.98247 7.00809 7.14928 7.95214 8.17626 8.30990 8.72692 9.49977 10.91360 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027031 B = 0.004264 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.592520 B = 6565.429710 C = 6876.069462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.155 4.155 4 C -0.033 4.033 5 H 0.093 0.907 6 C 0.044 3.956 7 N -0.549 5.549 8 C 0.066 3.934 9 C -0.026 4.026 10 H 0.105 0.895 11 C 0.238 3.762 12 N -0.463 5.463 13 C 0.021 3.979 14 C -0.609 4.609 15 H 0.049 0.951 16 C 0.022 3.978 17 N -0.907 5.907 18 Si 1.065 2.935 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.288 1.288 22 C 0.050 3.950 23 C -0.079 4.079 24 S -0.264 6.264 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.016 0.984 37 H 0.030 0.970 38 H 0.269 0.731 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.105 0.895 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.450 -1.828 0.397 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 C -0.212 4.212 4 C -0.163 4.163 5 H 0.111 0.889 6 C -0.086 4.086 7 N -0.272 5.272 8 C -0.062 4.062 9 C -0.049 4.049 10 H 0.122 0.878 11 C -0.078 4.078 12 N -0.140 5.140 13 C -0.017 4.017 14 C -0.647 4.647 15 H 0.067 0.933 16 C -0.183 4.183 17 N -0.542 5.542 18 Si 0.892 3.108 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.215 1.215 22 C -0.079 4.079 23 C -0.228 4.228 24 S -0.038 6.038 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.035 0.965 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.123 0.877 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.186 0.191 -0.510 18.194 hybrid contribution -0.086 -0.994 -0.015 0.998 sum -18.272 -0.803 -0.525 18.298 Atomic orbital electron populations 1.21862 0.94467 1.01912 1.02149 1.20959 0.96268 0.96869 0.95569 1.21985 1.01990 0.95180 1.02067 1.23354 0.97411 1.01295 0.94212 0.88867 1.22644 0.93171 0.99155 0.93589 1.61406 1.19567 1.44176 1.02078 1.22418 0.83942 0.96163 1.03715 1.19828 1.01059 0.91430 0.92594 0.87775 1.29069 0.90866 0.93750 0.94147 1.81059 1.11209 1.10362 1.11408 1.19242 0.86997 0.97928 0.97562 1.21955 0.93708 0.95833 1.53174 0.93298 1.25781 0.96450 1.01984 0.94037 1.70811 1.39285 1.00758 1.43358 0.83593 0.76231 0.74391 0.76536 1.20583 1.21231 1.21467 1.22270 0.94967 0.97958 0.92746 1.23539 0.96807 1.03630 0.98779 1.86746 1.60746 1.52961 1.03328 0.91693 0.92569 0.92624 0.90259 0.92813 0.91460 0.91840 0.91625 0.90229 0.90178 0.88417 0.96549 0.95174 0.92019 0.88997 0.92986 0.87697 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.97 37.16 0.33 -1.07 16 2 C -0.08 -0.84 2.76 -90.62 -0.25 -1.09 16 3 C -0.15 -1.90 8.59 37.16 0.32 -1.58 16 4 C -0.03 -0.40 2.57 -26.60 -0.07 -0.47 16 5 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 6 C 0.04 0.59 3.16 -3.92 -0.01 0.58 16 7 N -0.55 -7.11 4.59 -235.03 -1.08 -8.19 16 8 C 0.07 0.93 4.99 -3.83 -0.02 0.91 16 9 C -0.03 -0.46 1.79 -93.41 -0.17 -0.63 16 10 H 0.10 1.78 6.25 -51.93 -0.32 1.46 16 11 C 0.24 4.71 10.98 -20.75 -0.23 4.48 16 12 N -0.46 -9.76 17.79 42.17 0.75 -9.01 16 13 C 0.02 0.48 3.73 -27.88 -0.10 0.37 16 14 C -0.61 -16.14 8.60 -34.44 -0.30 -16.44 16 15 H 0.05 1.31 7.59 -52.49 -0.40 0.92 16 16 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 17 N -0.91 -26.34 13.65 55.43 0.76 -25.58 16 18 Si 1.06 24.75 29.90 -169.99 -5.08 19.67 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 22 C 0.05 0.60 4.07 -3.93 -0.02 0.59 16 23 C -0.08 -0.85 6.69 37.29 0.25 -0.60 16 24 S -0.26 -3.22 18.86 -107.50 -2.03 -5.25 16 25 H 0.06 0.68 6.97 -51.93 -0.36 0.31 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.87 6.89 -51.93 -0.36 0.51 16 31 H 0.06 0.92 6.48 -51.92 -0.34 0.58 16 32 H 0.07 1.03 3.64 -51.93 -0.19 0.84 16 33 H 0.08 1.10 7.67 -51.93 -0.40 0.71 16 34 H 0.08 1.13 7.68 -51.92 -0.40 0.73 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.02 0.39 8.01 -51.93 -0.42 -0.03 16 37 H 0.03 0.67 8.01 -51.92 -0.42 0.25 16 38 H 0.27 7.65 7.22 -40.82 -0.29 7.35 16 39 H 0.09 1.01 7.87 -51.93 -0.41 0.60 16 40 H 0.05 0.72 6.95 -51.93 -0.36 0.36 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 334.84 15.07 5.05 5.05 Total: -1.00 -29.28 334.84 -8.83 -38.11 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.84 Total: -0.37 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -0.36 Total: -14.43 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.43 Total: -42.78 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.67 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.03 Total: -5.25 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.28 -8.83 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076065293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.231 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds