Wall clock time and date at job start Tue Mar 31 2020 07:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46923 * 2 1 4 4 C 1.53000 * 109.46905 * 119.99693 * 2 1 3 5 5 H 1.09001 * 109.63101 * 59.61079 * 4 2 1 6 6 C 1.53256 * 109.62560 * 179.97438 * 4 2 1 7 7 N 1.46475 * 109.85294 * 181.71013 * 6 4 2 8 8 C 1.46904 * 110.99520 * 162.23836 * 7 6 4 9 9 C 1.52991 * 109.47339 * 76.25436 * 8 7 6 10 10 H 1.08997 * 109.47601 * 53.41709 * 9 8 7 11 11 C 1.47206 * 109.47336 * 293.41471 * 9 8 7 12 12 N 4.58462 * 164.28739 * 26.28852 * 2 1 3 13 13 C 1.53005 * 109.47212 * 173.42258 * 9 8 7 14 14 C 1.50702 * 109.47236 * 185.00263 * 13 9 8 15 15 H 1.07998 * 119.99895 * 359.97438 * 14 13 9 16 16 C 1.37877 * 119.99931 * 179.97438 * 14 13 9 17 17 N 1.31516 * 119.99834 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00076 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47260 * 179.97438 * 18 16 14 20 20 H 1.48505 * 109.47040 * 59.99981 * 18 16 14 21 21 H 1.48500 * 109.47031 * 300.00328 * 18 16 14 22 22 C 1.46465 * 112.55856 * 287.34032 * 7 6 4 23 23 C 1.53254 * 109.85962 * 72.66366 * 22 7 6 24 24 S 1.81892 * 109.63378 * 299.01082 * 4 2 1 25 25 H 1.09005 * 109.46912 * 300.00043 * 1 2 3 26 26 H 1.08993 * 109.46826 * 59.99794 * 1 2 3 27 27 H 1.08995 * 109.46806 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47128 * 239.99738 * 2 1 3 29 29 H 1.09001 * 109.47309 * 299.99528 * 3 2 1 30 30 H 1.08996 * 109.47432 * 59.99924 * 3 2 1 31 31 H 1.09007 * 109.46818 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.40643 * 61.59692 * 6 4 2 33 33 H 1.08996 * 109.34336 * 301.78649 * 6 4 2 34 34 H 1.09008 * 109.46748 * 316.24947 * 8 7 6 35 35 H 1.08997 * 109.47061 * 196.25746 * 8 7 6 36 36 H 1.08999 * 109.47033 * 64.99742 * 13 9 8 37 37 H 1.09008 * 109.46776 * 304.99871 * 13 9 8 38 38 H 0.96997 * 120.00187 * 359.97438 * 17 16 14 39 39 H 1.09003 * 109.40404 * 192.78029 * 22 7 6 40 40 H 1.09000 * 109.41167 * 312.54152 * 22 7 6 41 41 H 1.08993 * 109.62923 * 178.28739 * 23 22 7 42 42 H 1.09004 * 109.79436 * 57.79542 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6724 -1.7473 1.2555 6 6 3.5726 -0.7238 1.2526 7 7 4.0662 -1.4486 2.4258 8 6 5.4732 -1.8341 2.2528 9 6 6.3668 -0.6099 2.4617 10 1 6.1345 -0.1501 3.4223 11 6 6.1282 0.3618 1.3820 12 7 5.9434 1.1132 0.5499 13 6 7.8347 -1.0411 2.4443 14 6 8.7096 0.1415 2.7718 15 1 8.2633 1.1044 2.9718 16 6 10.0797 -0.0058 2.8160 17 7 10.6231 -1.1785 2.5729 18 14 11.1642 1.4602 3.2212 19 1 12.5888 1.0414 3.2056 20 1 10.8152 1.9765 4.5691 21 1 10.9505 2.5280 2.2115 22 6 3.8765 -0.6994 3.6700 23 6 2.3925 -0.6928 4.0526 24 16 1.4604 0.1498 2.7372 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6768 1.9564 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1301 1.4425 -0.0005 32 1 3.9365 0.3032 1.2818 33 1 3.9347 -1.2109 0.3472 34 1 5.6217 -2.2249 1.2461 35 1 5.7320 -2.6015 2.9823 36 1 8.0906 -1.4194 1.4546 37 1 7.9918 -1.8254 3.1850 38 1 10.0600 -1.9399 2.3628 39 1 4.4539 -1.1684 4.4668 40 1 4.2193 0.3260 3.5313 41 1 2.2596 -0.1605 4.9944 42 1 2.0337 -1.7168 4.1569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076065293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:27 Heat of formation + Delta-G solvation = -7.084814 kcal Electronic energy + Delta-G solvation = -20759.312855 eV Core-core repulsion = 17864.091296 eV Total energy + Delta-G solvation = -2895.221559 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.54536 -37.88330 -36.94689 -35.89912 -33.73885 -31.79058 -30.26250 -28.17329 -27.45036 -25.00689 -24.72798 -24.13510 -21.74790 -21.26997 -19.12395 -18.28794 -17.67316 -16.89915 -16.53786 -16.23633 -16.01350 -15.65649 -15.20453 -15.06678 -14.75555 -14.38232 -14.31527 -13.98530 -13.86176 -13.56105 -13.45789 -13.22302 -13.08713 -13.03595 -12.85122 -12.67744 -12.51539 -12.23112 -12.08894 -12.01957 -11.97854 -11.79141 -11.66524 -11.49302 -10.81043 -10.55604 -10.54183 -9.43524 -8.65973 -8.58434 -6.37973 0.81365 1.51209 1.56629 1.59023 1.75929 1.79064 1.81238 2.53113 2.66441 3.05203 3.18176 3.63381 3.73243 3.81314 3.95072 4.02190 4.05472 4.16731 4.20058 4.35936 4.39446 4.48719 4.50417 4.61418 4.71113 4.71855 4.76129 4.82392 4.90938 4.93724 4.97052 4.99989 5.12505 5.16005 5.31803 5.33283 5.38287 5.80763 5.92377 5.93432 6.17367 6.59724 6.61762 7.39355 8.75928 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027031 B = 0.004264 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.592520 B = 6565.429710 C = 6876.069462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 C -0.149 4.149 4 C -0.025 4.025 5 H 0.100 0.900 6 C 0.045 3.955 7 N -0.539 5.539 8 C 0.075 3.925 9 C -0.015 4.015 10 H 0.115 0.885 11 C 0.243 3.757 12 N -0.490 5.490 13 C 0.025 3.975 14 C -0.617 4.617 15 H 0.041 0.959 16 C -0.027 4.027 17 N -0.934 5.934 18 Si 1.102 2.898 19 H -0.281 1.281 20 H -0.265 1.265 21 H -0.285 1.285 22 C 0.047 3.953 23 C -0.070 4.070 24 S -0.287 6.287 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.037 0.963 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.120 0.880 36 H -0.003 1.003 37 H 0.036 0.964 38 H 0.262 0.738 39 H 0.109 0.891 40 H 0.032 0.968 41 H 0.121 0.879 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.726 -2.228 1.234 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.096 4.096 3 C -0.206 4.206 4 C -0.154 4.154 5 H 0.118 0.882 6 C -0.085 4.085 7 N -0.261 5.261 8 C -0.054 4.054 9 C -0.038 4.038 10 H 0.132 0.868 11 C -0.073 4.073 12 N -0.167 5.167 13 C -0.014 4.014 14 C -0.655 4.655 15 H 0.059 0.941 16 C -0.226 4.226 17 N -0.571 5.571 18 Si 0.925 3.075 19 H -0.207 1.207 20 H -0.190 1.190 21 H -0.211 1.211 22 C -0.082 4.082 23 C -0.218 4.218 24 S -0.061 6.061 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.015 0.985 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.127 0.873 40 H 0.050 0.950 41 H 0.140 0.860 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.492 -0.209 0.334 19.496 hybrid contribution 0.286 -0.848 -0.285 0.939 sum -19.205 -1.057 0.049 19.235 Atomic orbital electron populations 1.21799 0.93060 1.02618 1.02242 1.20984 0.97363 0.95785 0.95446 1.21912 1.00199 0.96363 1.02164 1.23303 0.95992 1.01659 0.94445 0.88163 1.22600 0.94445 0.97792 0.93623 1.61503 1.18294 1.44050 1.02283 1.22402 0.83822 0.94636 1.04513 1.19838 0.98966 0.92590 0.92402 0.86761 1.29504 0.90216 0.93505 0.94072 1.81053 1.11969 1.11315 1.12357 1.19107 0.89300 0.96629 0.96337 1.22352 0.94353 0.96769 1.52047 0.94088 1.26988 0.98410 1.03378 0.93811 1.70911 1.39391 1.01292 1.45479 0.83096 0.74843 0.72044 0.77483 1.20662 1.18961 1.21105 1.22355 0.96328 0.96845 0.92691 1.23573 0.95283 1.04314 0.98653 1.86866 1.61098 1.53839 1.04297 0.92517 0.91544 0.91597 0.89701 0.91788 0.92267 0.94406 0.93769 0.90849 0.90196 0.86236 0.98452 0.94623 0.92770 0.87253 0.94965 0.86038 0.88047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.97 71.98 0.65 -1.78 16 2 C -0.08 -1.58 2.76 -10.79 -0.03 -1.61 16 3 C -0.15 -3.62 8.59 71.98 0.62 -3.00 16 4 C -0.02 -0.56 2.57 30.68 0.08 -0.48 16 5 H 0.10 2.12 8.14 -2.39 -0.02 2.11 16 6 C 0.05 1.18 3.16 86.47 0.27 1.45 16 7 N -0.54 -12.94 4.59 -897.49 -4.12 -17.06 16 8 C 0.08 1.98 4.99 86.30 0.43 2.41 16 9 C -0.01 -0.51 1.79 -12.60 -0.02 -0.53 16 10 H 0.11 3.75 6.25 -2.39 -0.01 3.74 16 11 C 0.24 9.60 10.98 89.44 0.98 10.58 16 12 N -0.49 -20.85 17.79 20.01 0.36 -20.49 16 13 C 0.03 1.12 3.73 29.85 0.11 1.23 16 14 C -0.62 -32.61 8.60 25.60 0.22 -32.39 16 15 H 0.04 2.19 7.59 -2.91 -0.02 2.17 16 16 C -0.03 -1.46 5.46 84.65 0.46 -1.00 16 17 N -0.93 -54.47 13.65 21.45 0.29 -54.18 16 18 Si 1.10 49.40 29.90 68.60 2.05 51.45 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 C 0.05 1.04 4.07 86.47 0.35 1.39 16 23 C -0.07 -1.33 6.69 72.07 0.48 -0.85 16 24 S -0.29 -6.59 18.86 -56.49 -1.07 -7.66 16 25 H 0.06 1.09 6.97 -2.38 -0.02 1.08 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.52 6.89 -2.39 -0.02 1.50 16 31 H 0.04 1.11 6.48 -2.38 -0.02 1.09 16 32 H 0.04 1.38 3.64 -2.39 -0.01 1.37 16 33 H 0.07 1.99 7.67 -2.39 -0.02 1.97 16 34 H 0.08 2.14 7.68 -2.38 -0.02 2.12 16 35 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.00 -0.14 8.01 -2.39 -0.02 -0.16 16 37 H 0.04 1.55 8.01 -2.38 -0.02 1.54 16 38 H 0.26 15.08 7.22 -92.71 -0.67 14.41 16 39 H 0.11 2.06 7.87 -2.39 -0.02 2.04 16 40 H 0.03 0.86 6.95 -2.39 -0.02 0.84 16 41 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -62.44 334.84 3.21 -59.22 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 1.09 Total: 13.31 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 4.60 Total: -24.59 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -3.47 Total: -91.74 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.05 Total: 51.45 kcal Atomic # 16 Polarization: -6.59 SS G_CDS: -1.07 Total: -7.66 kcal Total: -62.44 3.21 -59.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076065293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.138 kcal (2) G-P(sol) polarization free energy of solvation -62.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds