Wall clock time and date at job start Tue Mar 31 2020 06:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29031 * 124.91495 * 2 1 4 4 C 1.31777 * 117.12322 * 180.02562 * 3 2 1 5 5 C 1.50699 * 122.74983 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47151 * 272.09201 * 5 4 3 7 7 C 1.46903 * 111.00029 * 176.73051 * 6 5 4 8 8 C 1.50700 * 109.47008 * 186.84976 * 7 6 5 9 9 H 1.08003 * 120.00087 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99688 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00320 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00026 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.46692 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47422 * 119.99796 * 12 10 8 15 15 H 1.48500 * 109.47213 * 240.00034 * 12 10 8 16 16 C 1.46899 * 110.99893 * 300.68593 * 6 5 4 17 17 C 1.52999 * 109.47398 * 283.66185 * 16 6 5 18 18 C 1.53005 * 109.46678 * 39.99189 * 17 16 6 19 19 C 1.52993 * 109.47281 * 159.99066 * 17 16 6 20 20 C 1.52999 * 109.47464 * 279.99384 * 17 16 6 21 21 C 1.33642 * 114.50253 * 0.23722 * 4 3 2 22 22 S 1.70976 * 124.91754 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.47425 * 89.99250 * 1 2 3 24 24 H 1.08997 * 109.47426 * 209.99564 * 1 2 3 25 25 H 1.09004 * 109.47314 * 330.00057 * 1 2 3 26 26 H 1.09003 * 109.47293 * 152.09385 * 5 4 3 27 27 H 1.09001 * 109.47090 * 32.09140 * 5 4 3 28 28 H 1.09000 * 109.47200 * 306.85573 * 7 6 5 29 29 H 1.08999 * 109.47090 * 66.85490 * 7 6 5 30 30 H 0.97004 * 120.00073 * 179.97438 * 11 10 8 31 31 H 1.08996 * 109.47318 * 43.66675 * 16 6 5 32 32 H 1.08999 * 109.46892 * 163.66414 * 16 6 5 33 33 H 1.08995 * 109.47011 * 59.21193 * 18 17 16 34 34 H 1.09003 * 109.46709 * 179.21124 * 18 17 16 35 35 H 1.08995 * 109.46916 * 299.20917 * 18 17 16 36 36 H 1.08999 * 109.47207 * 60.00607 * 19 17 16 37 37 H 1.09001 * 109.47623 * 180.02562 * 19 17 16 38 38 H 1.08995 * 109.47375 * 300.00348 * 19 17 16 39 39 H 1.09002 * 109.47331 * 99.96722 * 20 17 16 40 40 H 1.08994 * 109.47440 * 219.97503 * 20 17 16 41 41 H 1.09005 * 109.46788 * 339.97677 * 20 17 16 42 42 H 1.07997 * 126.04022 * 179.76707 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 4.5306 2.0246 -0.0012 6 7 4.8099 2.4293 -1.3854 7 6 5.7025 3.5955 -1.4231 8 6 5.8315 4.0837 -2.8430 9 1 5.3029 3.5785 -3.6378 10 6 6.6244 5.1753 -3.1272 11 7 7.2677 5.7907 -2.1593 12 14 6.7837 5.7810 -4.8871 13 1 5.9656 4.9232 -5.7817 14 1 6.3055 7.1843 -4.9729 15 1 8.2070 5.7165 -5.3059 16 6 5.3702 1.3123 -2.1576 17 6 6.8384 1.1140 -1.7758 18 6 7.0021 1.2990 -0.2658 19 6 7.2812 -0.2970 -2.1677 20 6 7.7002 2.1418 -2.5119 21 6 3.9354 -0.4006 -0.0060 22 16 2.4856 -1.4020 -0.0006 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8900 0.5138 26 1 5.4572 1.7105 0.4795 27 1 4.1054 2.8668 0.5448 28 1 5.2890 4.3898 -0.8018 29 1 6.6852 3.3131 -1.0453 30 1 7.8258 6.5585 -2.3593 31 1 4.8115 0.4025 -1.9380 32 1 5.2985 1.5346 -3.2223 33 1 6.3774 0.5760 0.2586 34 1 8.0456 1.1439 0.0081 35 1 6.6999 2.3089 0.0113 36 1 7.1646 -0.4288 -3.2434 37 1 8.3271 -0.4386 -1.8953 38 1 6.6673 -1.0293 -1.6433 39 1 7.9374 2.9658 -1.8389 40 1 8.6233 1.6689 -2.8468 41 1 7.1535 2.5232 -3.3744 42 1 4.9544 -0.7580 -0.0109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076729437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:51 Heat of formation + Delta-G solvation = 89.630304 kcal Electronic energy + Delta-G solvation = -21447.644996 eV Core-core repulsion = 18556.617319 eV Total energy + Delta-G solvation = -2891.027677 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.23692 -38.65981 -33.72109 -32.99639 -31.78362 -28.95821 -27.80280 -27.48750 -26.16084 -25.81800 -24.06622 -22.27936 -20.38825 -19.45664 -18.36276 -17.23609 -16.36059 -15.55335 -15.06965 -14.82839 -14.59488 -14.24127 -14.02259 -13.52480 -13.25966 -13.13680 -12.74657 -12.39025 -12.30980 -12.11912 -11.66421 -11.48439 -11.29580 -11.11492 -10.89335 -10.77793 -10.75244 -10.62107 -10.36114 -10.14105 -9.86593 -9.67734 -9.49847 -9.37938 -9.17544 -9.05834 -8.48406 -8.33551 -6.86011 -5.99121 -3.93013 0.89835 1.52893 1.89064 3.06346 3.32042 3.40675 3.44746 4.25488 4.46493 5.08702 5.15943 5.29066 5.34766 5.36291 5.41716 5.43062 5.51250 5.60953 5.68874 5.81937 5.93118 6.00944 6.13767 6.17333 6.19622 6.27919 6.33754 6.45307 6.53252 6.61763 6.78684 6.84436 6.97916 7.14902 7.35936 7.48387 7.77708 7.85005 8.05305 8.16361 8.28899 8.61847 9.07462 9.63887 11.11413 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.005321 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.856234 B = 5260.937439 C = 5898.910553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.046 3.954 3 N -0.453 5.453 4 C 0.102 3.898 5 C 0.075 3.925 6 N -0.523 5.523 7 C 0.166 3.834 8 C -0.487 4.487 9 H 0.060 0.940 10 C 0.057 3.943 11 N -0.897 5.897 12 Si 0.887 3.113 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.286 1.286 16 C 0.072 3.928 17 C -0.094 4.094 18 C -0.166 4.166 19 C -0.133 4.133 20 C -0.144 4.144 21 C -0.259 4.259 22 S 0.078 5.922 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.024 0.976 29 H 0.034 0.966 30 H 0.259 0.741 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.077 0.923 40 H 0.017 0.983 41 H 0.089 0.911 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.406 -14.679 5.183 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.233 4.233 3 N -0.168 5.168 4 C -0.029 4.029 5 C -0.055 4.055 6 N -0.246 5.246 7 C 0.042 3.958 8 C -0.526 4.526 9 H 0.079 0.921 10 C -0.144 4.144 11 N -0.537 5.537 12 Si 0.715 3.285 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.057 4.057 17 C -0.095 4.095 18 C -0.222 4.222 19 C -0.191 4.191 20 C -0.200 4.200 21 C -0.398 4.398 22 S 0.331 5.669 23 H 0.102 0.898 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.036 0.964 41 H 0.107 0.893 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.215 -14.923 4.998 17.313 hybrid contribution 1.549 0.851 -0.675 1.892 sum -5.665 -14.072 4.323 15.774 Atomic orbital electron populations 1.20398 0.85572 1.03785 1.03733 1.27036 1.01576 0.90738 1.03948 1.66147 1.04951 1.30931 1.14773 1.20437 0.89860 0.94243 0.98398 1.21806 0.95768 0.93819 0.94130 1.62333 1.47944 1.06278 1.08045 1.20455 0.91037 0.86257 0.98069 1.21024 1.26334 1.12245 0.92975 0.92149 1.24857 0.96121 0.96626 0.96782 1.69939 1.30994 1.21470 1.31288 0.86611 0.77634 0.78816 0.85447 1.19784 1.21154 1.21189 1.22272 0.90842 0.93270 0.99316 1.21153 0.98340 0.95123 0.94931 1.22823 1.00295 1.02775 0.96338 1.21877 1.00065 0.96343 1.00854 1.22483 0.96939 0.97388 1.03208 1.26841 1.02338 0.95749 1.14865 1.83721 0.99092 1.13899 1.70186 0.89763 0.90511 0.89385 0.89344 0.90365 0.95814 0.94888 0.93121 0.92991 0.90877 0.93291 0.93670 0.89290 0.92974 0.93413 0.94010 0.90464 0.96416 0.89258 0.80930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.46 36.00 0.38 -0.34 16 2 C 0.05 0.63 7.39 -13.46 -0.10 0.53 16 3 N -0.45 -7.87 10.53 -8.06 -0.08 -7.96 16 4 C 0.10 1.75 5.51 -84.23 -0.46 1.28 16 5 C 0.07 1.39 4.79 -4.98 -0.02 1.36 16 6 N -0.52 -11.14 4.77 -237.52 -1.13 -12.28 16 7 C 0.17 4.05 3.76 -4.97 -0.02 4.03 16 8 C -0.49 -12.89 5.26 -34.44 -0.18 -13.07 16 9 H 0.06 1.64 6.90 -52.48 -0.36 1.28 16 10 C 0.06 1.54 5.37 -17.82 -0.10 1.44 16 11 N -0.90 -25.39 13.29 55.43 0.74 -24.66 16 12 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 C 0.07 1.38 4.56 -3.83 -0.02 1.36 16 17 C -0.09 -1.65 0.77 -154.51 -0.12 -1.77 16 18 C -0.17 -2.76 6.17 37.16 0.23 -2.54 16 19 C -0.13 -1.97 8.13 37.15 0.30 -1.67 16 20 C -0.14 -2.95 7.36 37.16 0.27 -2.67 16 21 C -0.26 -3.73 8.86 29.12 0.26 -3.48 16 22 S 0.08 0.94 23.18 -107.50 -2.49 -1.55 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.09 1.52 2.94 -56.85 -0.17 1.35 16 27 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 28 H 0.02 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.03 0.82 2.45 -51.93 -0.13 0.69 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.05 0.93 5.05 -51.93 -0.26 0.67 16 32 H 0.07 1.55 6.55 -51.93 -0.34 1.21 16 33 H 0.05 0.72 4.89 -51.93 -0.25 0.47 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.68 3.52 -51.93 -0.18 1.50 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 38 H 0.04 0.55 8.06 -51.93 -0.42 0.13 16 39 H 0.08 1.80 5.59 -51.93 -0.29 1.51 16 40 H 0.02 0.32 7.70 -51.93 -0.40 -0.08 16 41 H 0.09 2.03 5.00 -51.93 -0.26 1.77 16 42 H 0.17 2.26 6.61 -52.49 -0.35 1.91 16 LS Contribution 319.59 15.07 4.82 4.82 Total: -1.00 -29.03 319.59 -8.68 -37.71 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.92 Total: 3.18 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 0.42 Total: -15.52 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.48 Total: -44.89 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.03 -8.68 -37.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076729437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.338 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds