Wall clock time and date at job start Tue Mar 31 2020 06:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29031 * 124.91495 * 2 1 4 4 C 1.31777 * 117.12322 * 180.02562 * 3 2 1 5 5 C 1.50699 * 122.74983 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47151 * 272.09201 * 5 4 3 7 7 C 1.46903 * 111.00029 * 176.73051 * 6 5 4 8 8 C 1.50700 * 109.47008 * 186.84976 * 7 6 5 9 9 H 1.08003 * 120.00087 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99688 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00320 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00026 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.46692 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47422 * 119.99796 * 12 10 8 15 15 H 1.48500 * 109.47213 * 240.00034 * 12 10 8 16 16 C 1.46899 * 110.99893 * 300.68593 * 6 5 4 17 17 C 1.52999 * 109.47398 * 283.66185 * 16 6 5 18 18 C 1.53005 * 109.46678 * 39.99189 * 17 16 6 19 19 C 1.52993 * 109.47281 * 159.99066 * 17 16 6 20 20 C 1.52999 * 109.47464 * 279.99384 * 17 16 6 21 21 C 1.33642 * 114.50253 * 0.23722 * 4 3 2 22 22 S 1.70976 * 124.91754 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.47425 * 89.99250 * 1 2 3 24 24 H 1.08997 * 109.47426 * 209.99564 * 1 2 3 25 25 H 1.09004 * 109.47314 * 330.00057 * 1 2 3 26 26 H 1.09003 * 109.47293 * 152.09385 * 5 4 3 27 27 H 1.09001 * 109.47090 * 32.09140 * 5 4 3 28 28 H 1.09000 * 109.47200 * 306.85573 * 7 6 5 29 29 H 1.08999 * 109.47090 * 66.85490 * 7 6 5 30 30 H 0.97004 * 120.00073 * 179.97438 * 11 10 8 31 31 H 1.08996 * 109.47318 * 43.66675 * 16 6 5 32 32 H 1.08999 * 109.46892 * 163.66414 * 16 6 5 33 33 H 1.08995 * 109.47011 * 59.21193 * 18 17 16 34 34 H 1.09003 * 109.46709 * 179.21124 * 18 17 16 35 35 H 1.08995 * 109.46916 * 299.20917 * 18 17 16 36 36 H 1.08999 * 109.47207 * 60.00607 * 19 17 16 37 37 H 1.09001 * 109.47623 * 180.02562 * 19 17 16 38 38 H 1.08995 * 109.47375 * 300.00348 * 19 17 16 39 39 H 1.09002 * 109.47331 * 99.96722 * 20 17 16 40 40 H 1.08994 * 109.47440 * 219.97503 * 20 17 16 41 41 H 1.09005 * 109.46788 * 339.97677 * 20 17 16 42 42 H 1.07997 * 126.04022 * 179.76707 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 4.5306 2.0246 -0.0012 6 7 4.8099 2.4293 -1.3854 7 6 5.7025 3.5955 -1.4231 8 6 5.8315 4.0837 -2.8430 9 1 5.3029 3.5785 -3.6378 10 6 6.6244 5.1753 -3.1272 11 7 7.2677 5.7907 -2.1593 12 14 6.7837 5.7810 -4.8871 13 1 5.9656 4.9232 -5.7817 14 1 6.3055 7.1843 -4.9729 15 1 8.2070 5.7165 -5.3059 16 6 5.3702 1.3123 -2.1576 17 6 6.8384 1.1140 -1.7758 18 6 7.0021 1.2990 -0.2658 19 6 7.2812 -0.2970 -2.1677 20 6 7.7002 2.1418 -2.5119 21 6 3.9354 -0.4006 -0.0060 22 16 2.4856 -1.4020 -0.0006 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8900 0.5138 26 1 5.4572 1.7105 0.4795 27 1 4.1054 2.8668 0.5448 28 1 5.2890 4.3898 -0.8018 29 1 6.6852 3.3131 -1.0453 30 1 7.8258 6.5585 -2.3593 31 1 4.8115 0.4025 -1.9380 32 1 5.2985 1.5346 -3.2223 33 1 6.3774 0.5760 0.2586 34 1 8.0456 1.1439 0.0081 35 1 6.6999 2.3089 0.0113 36 1 7.1646 -0.4288 -3.2434 37 1 8.3271 -0.4386 -1.8953 38 1 6.6673 -1.0293 -1.6433 39 1 7.9374 2.9658 -1.8389 40 1 8.6233 1.6689 -2.8468 41 1 7.1535 2.5232 -3.3744 42 1 4.9544 -0.7580 -0.0109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076729437.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:50 Heat of formation + Delta-G solvation = 70.811035 kcal Electronic energy + Delta-G solvation = -21448.461061 eV Core-core repulsion = 18556.617319 eV Total energy + Delta-G solvation = -2891.843742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60290 -40.01238 -35.21776 -34.84865 -33.08015 -30.38832 -29.31318 -28.82456 -27.52258 -27.37097 -25.80028 -23.60562 -22.00824 -20.60431 -19.84579 -18.46184 -18.29413 -17.08963 -16.59723 -16.29112 -16.11360 -15.59529 -15.40666 -14.94495 -14.51170 -14.31039 -14.14015 -13.93881 -13.38194 -13.17922 -13.00689 -12.96230 -12.95076 -12.67556 -12.59636 -12.39031 -12.32610 -12.23917 -11.92139 -11.84115 -11.53617 -11.29160 -11.14461 -10.97781 -10.47779 -10.44895 -10.23809 -9.57034 -8.52776 -8.09251 -6.09079 -0.17431 0.51778 0.80694 1.38419 1.41549 1.51690 1.86704 2.44778 3.23010 3.24825 3.58969 4.01350 4.01990 4.05520 4.19574 4.28892 4.41388 4.56071 4.57057 4.69874 4.71504 4.73676 4.80758 4.89841 4.93963 4.96960 5.06311 5.12355 5.16628 5.19598 5.24937 5.31201 5.42162 5.45806 5.55323 5.67869 5.79497 6.00314 6.20426 6.50607 6.76320 6.97531 6.98444 7.51188 9.00512 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.005321 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.856234 B = 5260.937439 C = 5898.910553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.033 3.967 3 N -0.504 5.504 4 C 0.076 3.924 5 C 0.080 3.920 6 N -0.541 5.541 7 C 0.181 3.819 8 C -0.487 4.487 9 H 0.049 0.951 10 C 0.014 3.986 11 N -0.927 5.927 12 Si 0.943 3.057 13 H -0.270 1.270 14 H -0.285 1.285 15 H -0.279 1.279 16 C 0.079 3.921 17 C -0.090 4.090 18 C -0.161 4.161 19 C -0.128 4.128 20 C -0.134 4.134 21 C -0.264 4.264 22 S 0.157 5.843 23 H 0.094 0.906 24 H 0.107 0.893 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.051 0.949 28 H -0.019 1.019 29 H 0.038 0.962 30 H 0.260 0.740 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.043 0.957 40 H 0.034 0.966 41 H 0.061 0.939 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.801 -17.983 5.023 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.245 4.245 3 N -0.220 5.220 4 C -0.055 4.055 5 C -0.049 4.049 6 N -0.264 5.264 7 C 0.056 3.944 8 C -0.526 4.526 9 H 0.067 0.933 10 C -0.184 4.184 11 N -0.569 5.569 12 Si 0.770 3.230 13 H -0.194 1.194 14 H -0.212 1.212 15 H -0.204 1.204 16 C -0.049 4.049 17 C -0.092 4.092 18 C -0.217 4.217 19 C -0.186 4.186 20 C -0.191 4.191 21 C -0.403 4.403 22 S 0.411 5.589 23 H 0.112 0.888 24 H 0.126 0.874 25 H 0.103 0.897 26 H 0.122 0.878 27 H 0.069 0.931 28 H -0.001 1.001 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -7.628 -18.255 4.836 20.367 hybrid contribution 1.578 1.789 -0.589 2.457 sum -6.050 -16.466 4.247 18.049 Atomic orbital electron populations 1.20596 0.83100 1.05174 1.04764 1.27696 1.03297 0.91085 1.02402 1.66117 1.05476 1.33308 1.17078 1.20134 0.89826 0.94452 1.01122 1.21693 0.97043 0.93984 0.92191 1.62131 1.47483 1.06445 1.10339 1.20146 0.91504 0.86594 0.96131 1.21154 1.25700 1.12137 0.93582 0.93326 1.25497 0.95954 0.96852 1.00093 1.70046 1.31828 1.21983 1.33028 0.85721 0.77813 0.78042 0.81444 1.19437 1.21155 1.20429 1.22188 0.92321 0.92977 0.97418 1.21082 0.96466 0.96402 0.95217 1.22696 1.01567 1.01678 0.95749 1.21812 1.01238 0.94191 1.01309 1.22293 0.97906 0.97317 1.01615 1.27055 1.04447 0.95516 1.13324 1.83416 0.96205 1.11111 1.68182 0.88762 0.87417 0.89746 0.87813 0.93065 1.00082 0.94472 0.93125 0.91002 0.93444 0.90793 0.92372 0.92245 0.92818 0.92159 0.91621 0.93814 0.94705 0.91989 0.79322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.46 71.23 0.75 -0.54 16 2 C 0.03 0.84 7.39 88.52 0.65 1.49 16 3 N -0.50 -17.29 10.53 -179.41 -1.89 -19.18 16 4 C 0.08 2.55 5.51 41.52 0.23 2.78 16 5 C 0.08 3.07 4.79 85.56 0.41 3.48 16 6 N -0.54 -23.87 4.77 -905.37 -4.32 -28.19 16 7 C 0.18 9.36 3.76 85.56 0.32 9.68 16 8 C -0.49 -26.88 5.26 25.60 0.13 -26.75 16 9 H 0.05 2.75 6.90 -2.91 -0.02 2.73 16 10 C 0.01 0.77 5.37 84.65 0.45 1.23 16 11 N -0.93 -54.42 13.29 21.45 0.28 -54.14 16 12 Si 0.94 44.60 29.54 68.60 2.03 46.63 16 13 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 14 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 16 C 0.08 3.03 4.56 86.30 0.39 3.42 16 17 C -0.09 -3.07 0.77 -52.18 -0.04 -3.11 16 18 C -0.16 -5.16 6.17 71.98 0.44 -4.71 16 19 C -0.13 -3.34 8.13 71.98 0.59 -2.75 16 20 C -0.13 -5.56 7.36 71.98 0.53 -5.03 16 21 C -0.26 -6.89 8.86 66.78 0.59 -6.30 16 22 S 0.16 3.23 23.18 -56.49 -1.31 1.92 16 23 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.10 3.58 2.94 -7.01 -0.02 3.56 16 27 H 0.05 2.17 8.10 -2.39 -0.02 2.15 16 28 H -0.02 -1.12 8.08 -2.39 -0.02 -1.14 16 29 H 0.04 1.94 2.45 -2.39 -0.01 1.93 16 30 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.07 2.45 5.05 -2.39 -0.01 2.44 16 32 H 0.05 2.04 6.55 -2.39 -0.02 2.02 16 33 H 0.07 1.99 4.89 -2.39 -0.01 1.98 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 2.29 3.52 -2.39 -0.01 2.28 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 38 H 0.06 1.42 8.06 -2.39 -0.02 1.40 16 39 H 0.04 2.09 5.59 -2.39 -0.01 2.08 16 40 H 0.03 1.27 7.70 -2.39 -0.02 1.25 16 41 H 0.06 2.89 5.00 -2.38 -0.01 2.88 16 42 H 0.19 4.15 6.61 -2.91 -0.02 4.14 16 Total: -1.00 -66.00 319.59 1.26 -64.73 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.02 Total: 15.34 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 5.45 Total: -27.11 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -5.92 Total: -101.51 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -1.31 Total: 1.92 kcal Total: -66.00 1.26 -64.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076729437.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.544 kcal (2) G-P(sol) polarization free energy of solvation -65.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds