Wall clock time and date at job start Tue Mar 31 2020 06:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47284 * 2 1 4 4 C 1.52995 * 109.47426 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46976 * 179.97438 * 4 3 2 6 6 N 1.29027 * 124.91478 * 90.00082 * 5 4 3 7 7 C 1.31786 * 117.12736 * 179.97438 * 6 5 4 8 8 C 1.50696 * 122.75368 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.46990 * 275.00110 * 8 7 6 10 10 C 1.46902 * 111.00222 * 293.95178 * 9 8 7 11 11 C 1.52995 * 109.47310 * 164.06896 * 10 9 8 12 12 C 1.46906 * 110.99866 * 170.00062 * 9 8 7 13 13 C 1.50701 * 109.46875 * 284.31099 * 12 9 8 14 14 H 1.08000 * 120.00064 * 4.66094 * 13 12 9 15 15 C 1.37875 * 119.99845 * 184.65853 * 13 12 9 16 16 N 1.31519 * 119.99872 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00113 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47093 * 90.00126 * 17 15 13 19 19 H 1.48493 * 109.47264 * 210.00411 * 17 15 13 20 20 H 1.48504 * 109.47252 * 330.00381 * 17 15 13 21 21 C 1.33645 * 114.49313 * 0.02562 * 7 6 5 22 22 S 1.70974 * 124.91858 * 269.69264 * 5 4 3 23 23 H 1.09008 * 109.46819 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46830 * 299.99909 * 1 2 3 25 25 H 1.08997 * 109.47605 * 59.99659 * 1 2 3 26 26 H 1.09002 * 109.47253 * 240.00404 * 2 1 3 27 27 H 1.08997 * 109.47605 * 120.00341 * 2 1 3 28 28 H 1.09007 * 109.47048 * 300.00586 * 3 2 1 29 29 H 1.08997 * 109.46887 * 59.99612 * 3 2 1 30 30 H 1.08995 * 109.46894 * 299.99800 * 4 3 2 31 31 H 1.09002 * 109.47471 * 60.00183 * 4 3 2 32 32 H 1.08996 * 109.47154 * 35.00088 * 8 7 6 33 33 H 1.09003 * 109.47065 * 154.99869 * 8 7 6 34 34 H 1.08996 * 109.47086 * 284.07157 * 10 9 8 35 35 H 1.09006 * 109.46905 * 44.06877 * 10 9 8 36 36 H 1.09006 * 109.47255 * 179.42145 * 11 10 9 37 37 H 1.09005 * 109.47524 * 299.42383 * 11 10 9 38 38 H 1.09004 * 109.47398 * 59.42049 * 11 10 9 39 39 H 1.08997 * 109.47269 * 44.31419 * 12 9 8 40 40 H 1.09000 * 109.46836 * 164.31460 * 12 9 8 41 41 H 0.97002 * 119.99665 * 179.97438 * 16 15 13 42 42 H 1.08004 * 126.02836 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0722 2.8634 -0.0013 6 7 4.3188 3.5600 1.0564 7 6 4.7544 4.7908 0.8773 8 6 5.0820 5.7144 2.0221 9 7 3.8572 6.3884 2.4733 10 6 3.3389 7.2891 1.4349 11 6 1.8907 7.6612 1.7590 12 6 4.0873 7.1121 3.7308 13 6 4.1446 6.1298 4.8723 14 1 4.0979 5.0691 4.6748 15 6 4.2568 6.5854 6.1688 16 7 4.3132 7.8772 6.4093 17 14 4.3285 5.3679 7.5837 18 1 5.7430 5.0041 7.8524 19 1 3.7368 5.9847 8.7979 20 1 3.5629 4.1469 7.2254 21 6 4.8818 5.1526 -0.4029 22 16 4.4049 3.7832 -1.4036 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.9336 0.9286 0.8891 31 1 3.9330 0.9289 -0.8909 32 1 5.5035 5.1375 2.8452 33 1 5.8062 6.4593 1.6922 34 1 3.9473 8.1928 1.4011 35 1 3.3777 6.7885 0.4674 36 1 1.5094 8.3376 0.9939 37 1 1.2802 6.7584 1.7827 38 1 1.8505 8.1525 2.7311 39 1 5.0308 7.6546 3.6705 40 1 3.2730 7.8170 3.8986 41 1 4.3918 8.1977 7.3215 42 1 5.2221 6.1132 -0.7607 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:14 Heat of formation + Delta-G solvation = 24.352756 kcal Electronic energy + Delta-G solvation = -19922.680520 eV Core-core repulsion = 17028.822197 eV Total energy + Delta-G solvation = -2893.858324 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.77574 -36.84781 -35.82894 -32.64616 -32.05825 -30.28826 -29.14958 -27.08763 -25.62141 -24.75509 -22.55382 -21.94844 -21.15081 -19.86854 -19.48503 -17.30276 -16.38086 -15.62260 -15.27687 -15.07190 -14.69204 -14.33843 -13.99608 -13.72662 -13.56086 -13.29268 -13.08493 -12.74734 -12.37634 -12.29908 -11.94719 -11.48032 -11.39567 -11.37143 -11.22956 -11.10848 -10.99303 -10.78875 -10.72693 -10.68717 -10.50793 -10.22398 -9.66641 -9.31392 -9.20165 -9.14713 -8.49103 -8.35855 -7.22235 -5.96783 -3.96937 0.91460 1.54939 1.91060 3.08629 3.36772 3.42576 3.49065 4.18224 4.49122 4.75460 4.82608 4.90256 5.05016 5.16902 5.25753 5.37320 5.39427 5.49437 5.54639 5.64119 5.67794 5.71229 5.75491 5.83270 5.90453 6.00656 6.09708 6.12504 6.17296 6.22160 6.30696 6.38078 6.57308 6.63203 6.84015 7.25088 7.34908 7.89401 8.08524 8.17217 8.22899 8.59257 9.11940 9.67004 11.13891 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.013488 B = 0.004661 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.468490 B = 6005.988376 C = 7013.209539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.115 4.115 4 C -0.041 4.041 5 C 0.053 3.947 6 N -0.444 5.444 7 C 0.102 3.898 8 C 0.131 3.869 9 N -0.526 5.526 10 C 0.046 3.954 11 C -0.141 4.141 12 C 0.192 3.808 13 C -0.501 4.501 14 H 0.065 0.935 15 C 0.054 3.946 16 N -0.902 5.902 17 Si 0.896 3.104 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.273 1.273 21 C -0.263 4.263 22 S 0.076 5.924 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.037 0.963 34 H 0.021 0.979 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.062 0.938 39 H -0.011 1.011 40 H 0.039 0.961 41 H 0.260 0.740 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 -10.680 -17.306 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.082 4.082 5 C -0.226 4.226 6 N -0.158 5.158 7 C -0.030 4.030 8 C 0.000 4.000 9 N -0.251 5.251 10 C -0.082 4.082 11 C -0.199 4.199 12 C 0.068 3.932 13 C -0.540 4.540 14 H 0.083 0.917 15 C -0.146 4.146 16 N -0.542 5.542 17 Si 0.724 3.276 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.197 1.197 21 C -0.402 4.402 22 S 0.330 5.670 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.055 0.945 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.007 0.993 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.942 -11.320 -17.616 21.145 hybrid contribution 0.875 0.824 1.340 1.800 sum -2.067 -10.496 -16.276 19.477 Atomic orbital electron populations 1.21770 0.95748 1.01477 1.02073 1.21509 0.96046 0.96366 1.02070 1.21627 0.93244 0.97299 1.03205 1.20263 0.96221 0.87770 1.03918 1.27059 1.03416 1.01595 0.90515 1.66097 1.12950 1.05971 1.30750 1.20493 0.97530 0.90954 0.94065 1.20553 0.92024 0.93807 0.93570 1.62095 1.27749 1.31032 1.04212 1.22071 0.96071 0.94597 0.95484 1.21719 0.96075 1.00782 1.01314 1.19807 0.95614 0.93427 0.84372 1.21209 1.48794 0.93720 0.90259 0.91676 1.24970 0.95620 0.95164 0.98858 1.69961 1.51243 1.12642 1.20350 0.86520 0.78110 0.81356 0.81601 1.20799 1.21370 1.19735 1.26796 1.13986 1.03662 0.95754 1.83679 1.62259 1.06969 1.14047 0.92839 0.92462 0.92804 0.92072 0.91684 0.91835 0.90757 0.88792 0.90074 0.88248 0.94459 0.96058 0.92386 0.93741 0.92583 0.91938 0.99323 0.94296 0.93041 0.81119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.03 5.93 -26.73 -0.16 -1.19 16 3 C -0.11 -1.19 5.20 -26.73 -0.14 -1.33 16 4 C -0.04 -0.44 5.80 -27.88 -0.16 -0.60 16 5 C 0.05 0.76 6.64 -13.46 -0.09 0.67 16 6 N -0.44 -8.02 10.53 -8.06 -0.08 -8.10 16 7 C 0.10 1.81 5.63 -84.22 -0.47 1.33 16 8 C 0.13 2.65 5.23 -4.98 -0.03 2.62 16 9 N -0.53 -11.70 4.37 -237.52 -1.04 -12.74 16 10 C 0.05 0.87 5.54 -3.83 -0.02 0.85 16 11 C -0.14 -2.54 9.99 37.15 0.37 -2.17 16 12 C 0.19 5.06 4.59 -4.97 -0.02 5.03 16 13 C -0.50 -14.37 8.61 -34.44 -0.30 -14.66 16 14 H 0.07 1.90 7.66 -52.49 -0.40 1.50 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 17 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 C -0.26 -3.84 9.51 29.12 0.28 -3.57 16 22 S 0.08 0.94 23.18 -107.50 -2.49 -1.55 16 23 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 2.22 7.32 -51.93 -0.38 1.84 16 33 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 35 H 0.06 1.00 5.70 -51.93 -0.30 0.70 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.24 6.52 -51.93 -0.34 0.90 16 39 H -0.01 -0.30 8.00 -51.93 -0.42 -0.72 16 40 H 0.04 1.09 6.24 -51.93 -0.32 0.76 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.17 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -31.12 353.76 -10.24 -41.37 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -7.20 Total: -2.74 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -0.47 Total: -12.42 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.39 Total: -47.15 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.12 -10.24 -41.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.718 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds