Wall clock time and date at job start Tue Mar 31 2020 06:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47284 * 2 1 4 4 C 1.52995 * 109.47426 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46976 * 179.97438 * 4 3 2 6 6 N 1.29027 * 124.91478 * 90.00082 * 5 4 3 7 7 C 1.31786 * 117.12736 * 179.97438 * 6 5 4 8 8 C 1.50696 * 122.75368 * 180.02562 * 7 6 5 9 9 N 1.46896 * 109.46990 * 275.00110 * 8 7 6 10 10 C 1.46902 * 111.00222 * 293.95178 * 9 8 7 11 11 C 1.52995 * 109.47310 * 164.06896 * 10 9 8 12 12 C 1.46906 * 110.99866 * 170.00062 * 9 8 7 13 13 C 1.50701 * 109.46875 * 284.31099 * 12 9 8 14 14 H 1.08000 * 120.00064 * 4.66094 * 13 12 9 15 15 C 1.37875 * 119.99845 * 184.65853 * 13 12 9 16 16 N 1.31519 * 119.99872 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00113 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47093 * 90.00126 * 17 15 13 19 19 H 1.48493 * 109.47264 * 210.00411 * 17 15 13 20 20 H 1.48504 * 109.47252 * 330.00381 * 17 15 13 21 21 C 1.33645 * 114.49313 * 0.02562 * 7 6 5 22 22 S 1.70974 * 124.91858 * 269.69264 * 5 4 3 23 23 H 1.09008 * 109.46819 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46830 * 299.99909 * 1 2 3 25 25 H 1.08997 * 109.47605 * 59.99659 * 1 2 3 26 26 H 1.09002 * 109.47253 * 240.00404 * 2 1 3 27 27 H 1.08997 * 109.47605 * 120.00341 * 2 1 3 28 28 H 1.09007 * 109.47048 * 300.00586 * 3 2 1 29 29 H 1.08997 * 109.46887 * 59.99612 * 3 2 1 30 30 H 1.08995 * 109.46894 * 299.99800 * 4 3 2 31 31 H 1.09002 * 109.47471 * 60.00183 * 4 3 2 32 32 H 1.08996 * 109.47154 * 35.00088 * 8 7 6 33 33 H 1.09003 * 109.47065 * 154.99869 * 8 7 6 34 34 H 1.08996 * 109.47086 * 284.07157 * 10 9 8 35 35 H 1.09006 * 109.46905 * 44.06877 * 10 9 8 36 36 H 1.09006 * 109.47255 * 179.42145 * 11 10 9 37 37 H 1.09005 * 109.47524 * 299.42383 * 11 10 9 38 38 H 1.09004 * 109.47398 * 59.42049 * 11 10 9 39 39 H 1.08997 * 109.47269 * 44.31419 * 12 9 8 40 40 H 1.09000 * 109.46836 * 164.31460 * 12 9 8 41 41 H 0.97002 * 119.99665 * 179.97438 * 16 15 13 42 42 H 1.08004 * 126.02836 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0722 2.8634 -0.0013 6 7 4.3188 3.5600 1.0564 7 6 4.7544 4.7908 0.8773 8 6 5.0820 5.7144 2.0221 9 7 3.8572 6.3884 2.4733 10 6 3.3389 7.2891 1.4349 11 6 1.8907 7.6612 1.7590 12 6 4.0873 7.1121 3.7308 13 6 4.1446 6.1298 4.8723 14 1 4.0979 5.0691 4.6748 15 6 4.2568 6.5854 6.1688 16 7 4.3132 7.8772 6.4093 17 14 4.3285 5.3679 7.5837 18 1 5.7430 5.0041 7.8524 19 1 3.7368 5.9847 8.7979 20 1 3.5629 4.1469 7.2254 21 6 4.8818 5.1526 -0.4029 22 16 4.4049 3.7832 -1.4036 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.9336 0.9286 0.8891 31 1 3.9330 0.9289 -0.8909 32 1 5.5035 5.1375 2.8452 33 1 5.8062 6.4593 1.6922 34 1 3.9473 8.1928 1.4011 35 1 3.3777 6.7885 0.4674 36 1 1.5094 8.3376 0.9939 37 1 1.2802 6.7584 1.7827 38 1 1.8505 8.1525 2.7311 39 1 5.0308 7.6546 3.6705 40 1 3.2730 7.8170 3.8986 41 1 4.3918 8.1977 7.3215 42 1 5.2221 6.1132 -0.7607 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:13 Heat of formation + Delta-G solvation = 5.418186 kcal Electronic energy + Delta-G solvation = -19923.501585 eV Core-core repulsion = 17028.822197 eV Total energy + Delta-G solvation = -2894.679388 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.01782 -38.44601 -36.72264 -34.77960 -33.14320 -31.76556 -30.45227 -28.85606 -26.97686 -25.99012 -24.46422 -23.01977 -21.96348 -21.51876 -20.66219 -18.69749 -18.37299 -16.90285 -16.56123 -16.41017 -16.22587 -15.72108 -15.42377 -15.15400 -14.63830 -14.52933 -14.27266 -14.12156 -13.71977 -13.62842 -13.35391 -13.11052 -12.92345 -12.69503 -12.59868 -12.46606 -12.16707 -12.15445 -12.10743 -12.07245 -11.83814 -11.51968 -11.43040 -11.29224 -10.59935 -10.44981 -10.27584 -9.62387 -9.00709 -8.19593 -6.28387 -0.20757 0.48824 0.77574 1.38439 1.39661 1.52053 1.82967 2.40538 3.10961 3.13462 3.40757 3.83443 4.05699 4.06898 4.16708 4.19985 4.28396 4.40141 4.44066 4.48324 4.61701 4.65797 4.69407 4.76041 4.79720 4.92500 4.98598 4.99855 5.02741 5.12377 5.20643 5.22890 5.24956 5.29813 5.33729 5.41649 5.50456 5.67421 6.08718 6.34889 6.62521 6.86234 6.97266 7.40410 8.90684 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.013488 B = 0.004661 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.468490 B = 6005.988376 C = 7013.209539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.109 4.109 4 C -0.041 4.041 5 C 0.040 3.960 6 N -0.495 5.495 7 C 0.074 3.926 8 C 0.137 3.863 9 N -0.538 5.538 10 C 0.047 3.953 11 C -0.136 4.136 12 C 0.210 3.790 13 C -0.518 4.518 14 H 0.052 0.948 15 C 0.006 3.994 16 N -0.933 5.933 17 Si 0.964 3.036 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.272 1.272 21 C -0.263 4.263 22 S 0.164 5.836 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.024 0.976 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.034 0.966 39 H -0.036 1.036 40 H 0.017 0.983 41 H 0.264 0.736 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.718 -12.158 -19.698 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.149 4.149 4 C -0.082 4.082 5 C -0.238 4.238 6 N -0.210 5.210 7 C -0.058 4.058 8 C 0.006 3.994 9 N -0.263 5.263 10 C -0.081 4.081 11 C -0.193 4.193 12 C 0.084 3.916 13 C -0.557 4.557 14 H 0.070 0.930 15 C -0.192 4.192 16 N -0.573 5.573 17 Si 0.788 3.212 18 H -0.198 1.198 19 H -0.203 1.203 20 H -0.196 1.196 21 C -0.403 4.403 22 S 0.419 5.581 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.132 0.868 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.053 0.947 39 H -0.018 1.018 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -3.195 -12.810 -20.038 23.997 hybrid contribution 0.950 1.262 1.941 2.502 sum -2.246 -11.548 -18.097 21.585 Atomic orbital electron populations 1.21786 0.95669 1.02131 1.01631 1.21493 0.96086 0.95029 1.02971 1.21571 0.92908 0.98443 1.01936 1.20441 0.96375 0.86194 1.05188 1.27591 1.02429 1.02767 0.91026 1.66038 1.14992 1.06676 1.33297 1.20059 1.00476 0.91142 0.94163 1.20350 0.91284 0.94024 0.93732 1.61995 1.29056 1.31300 1.03964 1.22164 0.96294 0.94310 0.95362 1.21684 0.95621 1.00953 1.01065 1.19419 0.93336 0.92609 0.86272 1.21424 1.49154 0.93460 0.91634 0.92974 1.25806 0.94964 0.97010 1.01448 1.70067 1.51742 1.14346 1.21183 0.85470 0.78514 0.78885 0.78288 1.19754 1.20319 1.19626 1.27075 1.12241 1.05554 0.95402 1.83333 1.59911 1.03952 1.10914 0.91648 0.93910 0.92281 0.89933 0.91982 0.91126 0.93970 0.89529 0.86769 0.91781 0.93511 0.95764 0.90049 0.90031 0.93297 0.94666 1.01788 0.96461 0.92671 0.79079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 71.98 0.71 -1.59 16 2 C -0.12 -1.76 5.93 30.59 0.18 -1.58 16 3 C -0.11 -2.12 5.20 30.59 0.16 -1.97 16 4 C -0.04 -0.82 5.80 29.85 0.17 -0.65 16 5 C 0.04 1.08 6.64 88.52 0.59 1.67 16 6 N -0.50 -17.97 10.53 -179.40 -1.89 -19.86 16 7 C 0.07 2.61 5.63 41.52 0.23 2.84 16 8 C 0.14 5.73 5.23 85.56 0.45 6.18 16 9 N -0.54 -24.82 4.37 -905.38 -3.96 -28.78 16 10 C 0.05 1.75 5.54 86.30 0.48 2.22 16 11 C -0.14 -4.85 9.99 71.98 0.72 -4.13 16 12 C 0.21 11.59 4.59 85.56 0.39 11.98 16 13 C -0.52 -31.01 8.61 25.60 0.22 -30.79 16 14 H 0.05 3.19 7.66 -2.91 -0.02 3.17 16 15 C 0.01 0.33 5.46 84.65 0.46 0.79 16 16 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 17 Si 0.96 46.42 29.54 68.60 2.03 48.45 16 18 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 21 C -0.26 -7.14 9.51 66.78 0.64 -6.50 16 22 S 0.16 3.50 23.18 -56.49 -1.31 2.19 16 23 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 3.07 7.32 -2.39 -0.02 3.05 16 33 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 34 H 0.02 0.90 8.05 -2.39 -0.02 0.88 16 35 H 0.08 2.67 5.70 -2.38 -0.01 2.65 16 36 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.03 1.43 6.52 -2.39 -0.02 1.41 16 39 H -0.04 -2.09 8.00 -2.39 -0.02 -2.10 16 40 H 0.02 1.02 6.24 -2.39 -0.01 1.01 16 41 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.19 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -70.06 353.76 1.53 -68.53 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.97 Total: 8.01 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 5.40 Total: -21.51 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -5.56 Total: -105.66 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -1.31 Total: 2.19 kcal Total: -70.06 1.53 -68.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.944 kcal (2) G-P(sol) polarization free energy of solvation -70.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds