Wall clock time and date at job start Tue Mar 31 2020 06:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33641 * 122.74373 * 2 1 4 4 S 1.76204 * 107.92163 * 179.97438 * 3 2 1 5 5 C 1.70981 * 90.27887 * 0.27544 * 4 3 2 6 6 C 1.50697 * 124.91097 * 179.83910 * 5 4 3 7 7 N 1.46897 * 109.47331 * 263.82152 * 6 5 4 8 8 C 1.46904 * 111.00187 * 189.34066 * 7 6 5 9 9 C 1.50698 * 109.46857 * 170.04921 * 8 7 6 10 10 H 1.07998 * 120.00491 * 2.21039 * 9 8 7 11 11 C 1.37880 * 119.99919 * 182.20521 * 9 8 7 12 12 N 1.31514 * 120.00426 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99889 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.47028 * 89.99633 * 13 11 9 15 15 H 1.48492 * 109.47175 * 209.99564 * 13 11 9 16 16 H 1.48503 * 109.47016 * 329.99875 * 13 11 9 17 17 C 1.46903 * 111.00285 * 65.38786 * 7 6 5 18 18 C 1.53003 * 109.47124 * 80.46666 * 17 7 6 19 19 C 1.52996 * 109.46942 * 77.72070 * 18 17 7 20 20 C 1.53003 * 109.46787 * 197.71674 * 18 17 7 21 21 C 1.52994 * 109.47213 * 317.71876 * 18 17 7 22 22 N 1.29024 * 110.16738 * 359.83935 * 5 4 3 23 23 H 1.09006 * 109.47659 * 269.70492 * 1 2 3 24 24 H 1.09009 * 109.47123 * 149.70901 * 1 2 3 25 25 H 1.08998 * 109.47570 * 29.71099 * 1 2 3 26 26 H 1.08000 * 126.04103 * 0.03542 * 3 2 1 27 27 H 1.09002 * 109.47721 * 23.82355 * 6 5 4 28 28 H 1.09007 * 109.47189 * 143.82093 * 6 5 4 29 29 H 1.09001 * 109.47139 * 290.04500 * 8 7 6 30 30 H 1.08995 * 109.46777 * 50.05050 * 8 7 6 31 31 H 0.97001 * 120.00121 * 180.02562 * 12 11 9 32 32 H 1.08992 * 109.47454 * 200.47469 * 17 7 6 33 33 H 1.09008 * 109.46749 * 320.47027 * 17 7 6 34 34 H 1.09004 * 109.46934 * 22.25667 * 19 18 17 35 35 H 1.08994 * 109.47687 * 142.25804 * 19 18 17 36 36 H 1.08997 * 109.47063 * 262.26184 * 19 18 17 37 37 H 1.09002 * 109.47165 * 60.00563 * 20 18 17 38 38 H 1.09001 * 109.46406 * 180.02562 * 20 18 17 39 39 H 1.08995 * 109.47531 * 300.00330 * 20 18 17 40 40 H 1.08997 * 109.47174 * 63.56269 * 21 18 17 41 41 H 1.08996 * 109.47165 * 183.56078 * 21 18 17 42 42 H 1.09005 * 109.47359 * 303.56302 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2298 1.1241 0.0000 4 16 3.9332 0.6733 0.0007 5 6 3.5039 -0.9817 -0.0072 6 6 4.4835 -2.1268 -0.0142 7 7 4.6870 -2.5888 -1.3937 8 6 5.4586 -3.8386 -1.4220 9 6 5.4394 -4.4092 -2.8166 10 1 4.9376 -3.8770 -3.6110 11 6 6.0627 -5.6109 -3.0783 12 7 6.0456 -6.1093 -4.2953 13 14 6.9304 -6.5319 -1.7041 14 1 5.9723 -7.4561 -1.0457 15 1 8.0619 -7.3110 -2.2677 16 1 7.4464 -5.5607 -0.7062 17 6 5.3360 -1.5511 -2.2061 18 6 6.8422 -1.5609 -1.9377 19 6 7.4873 -2.7245 -2.6932 20 6 7.4537 -0.2418 -2.4144 21 6 7.0919 -1.7260 -0.4373 22 7 2.2199 -1.1082 -0.0065 23 1 -0.3635 -0.0053 1.0277 24 1 -0.3634 -0.8874 -0.5184 25 1 -0.3634 0.8925 -0.5093 26 1 1.8390 2.1309 0.0005 27 1 5.4346 -1.7940 0.4016 28 1 4.0900 -2.9453 0.5888 29 1 6.4881 -3.6367 -1.1261 30 1 5.0155 -4.5548 -0.7301 31 1 6.4838 -6.9549 -4.4793 32 1 5.1537 -1.7495 -3.2622 33 1 4.9265 -0.5754 -1.9439 34 1 6.8454 -3.0188 -3.5236 35 1 8.4590 -2.4143 -3.0773 36 1 7.6168 -3.5694 -2.0169 37 1 6.9942 0.5872 -1.8762 38 1 8.5269 -0.2491 -2.2236 39 1 7.2759 -0.1242 -3.4833 40 1 6.7122 -2.6939 -0.1102 41 1 8.1621 -1.6696 -0.2387 42 1 6.5792 -0.9321 0.1059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081671715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:28 Heat of formation + Delta-G solvation = 91.899934 kcal Electronic energy + Delta-G solvation = -21392.312972 eV Core-core repulsion = 18501.383713 eV Total energy + Delta-G solvation = -2890.929258 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.99388 -39.17110 -34.01556 -32.89774 -31.68043 -29.17211 -28.06672 -27.51595 -26.40948 -25.98737 -24.42280 -22.03254 -20.33202 -19.49819 -18.27738 -17.50897 -16.91467 -15.57383 -15.27526 -15.04351 -14.44655 -14.21765 -14.11775 -13.58971 -13.40165 -13.03063 -12.82441 -12.49684 -12.42676 -12.26594 -11.72579 -11.58541 -11.31535 -11.26018 -11.19357 -11.06164 -10.85667 -10.68048 -10.53204 -10.12120 -9.97307 -9.84047 -9.60974 -9.34353 -9.24309 -9.11930 -8.52252 -8.46116 -7.13293 -6.03122 -3.93168 0.87420 1.53529 1.90760 2.97526 3.27386 3.34023 3.36700 4.26975 4.41942 4.85365 5.11146 5.23055 5.25378 5.29943 5.32067 5.33981 5.48082 5.57147 5.60558 5.70938 5.86333 5.91996 5.97307 6.03030 6.05356 6.14174 6.20925 6.35943 6.41147 6.44814 6.58532 6.68430 6.80013 6.91208 6.95724 7.20505 7.59638 7.67845 7.87692 7.98796 8.04698 8.66936 9.03861 9.57585 11.09947 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020602 B = 0.005855 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.775775 B = 4781.239760 C = 5484.015888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.070 3.930 3 C -0.279 4.279 4 S 0.096 5.904 5 C 0.092 3.908 6 C 0.083 3.917 7 N -0.509 5.509 8 C 0.129 3.871 9 C -0.489 4.489 10 H 0.080 0.920 11 C 0.070 3.930 12 N -0.900 5.900 13 Si 0.864 3.136 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.267 1.267 17 C 0.070 3.930 18 C -0.096 4.096 19 C -0.144 4.144 20 C -0.134 4.134 21 C -0.168 4.168 22 N -0.461 5.461 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.171 0.829 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.036 0.964 30 H 0.019 0.981 31 H 0.263 0.737 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.101 0.899 35 H 0.021 0.979 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.325 14.616 9.514 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 C -0.418 4.418 4 S 0.351 5.649 5 C -0.188 4.188 6 C -0.047 4.047 7 N -0.233 5.233 8 C 0.004 3.996 9 C -0.527 4.527 10 H 0.098 0.902 11 C -0.131 4.131 12 N -0.539 5.539 13 Si 0.692 3.308 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.192 1.192 17 C -0.058 4.058 18 C -0.098 4.098 19 C -0.201 4.201 20 C -0.192 4.192 21 C -0.224 4.224 22 N -0.175 5.175 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.188 0.812 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.120 0.880 35 H 0.040 0.960 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.007 14.366 9.211 17.183 hybrid contribution 0.283 -0.376 0.972 1.080 sum -1.724 13.990 10.183 17.389 Atomic orbital electron populations 1.20340 0.87486 1.03285 1.02597 1.20365 0.98212 0.86706 1.00972 1.26701 0.95308 1.03595 1.16158 1.83926 1.07692 1.04600 1.68718 1.27218 0.93898 0.97384 1.00284 1.21668 0.95139 0.93258 0.94672 1.62177 1.50293 1.04565 1.06252 1.21118 0.93091 0.86206 0.99142 1.20812 1.33493 1.05142 0.93267 0.90192 1.24784 0.96401 0.96974 0.94985 1.69871 1.44687 1.19918 1.19428 0.87054 0.79897 0.80680 0.83171 1.20318 1.21306 1.19189 1.22357 0.90210 0.93561 0.99701 1.21154 0.97581 0.96279 0.94747 1.22625 0.98857 0.95909 1.02695 1.21856 0.99858 0.96462 1.01015 1.22754 1.01033 1.01963 0.96627 1.66135 1.04710 1.30863 1.15833 0.90927 0.90428 0.91028 0.81175 0.89814 0.88801 0.94693 0.96309 0.92746 0.90010 0.93049 0.88047 0.95969 0.91643 0.93586 0.93266 0.92678 0.90149 0.93122 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.31 36.00 0.37 -0.47 16 2 C 0.07 1.00 6.74 -84.23 -0.57 0.44 16 3 C -0.28 -3.51 11.13 29.12 0.32 -3.18 16 4 S 0.10 1.28 21.63 -107.50 -2.32 -1.05 16 5 C 0.09 1.52 6.06 -13.46 -0.08 1.43 16 6 C 0.08 1.44 4.97 -4.98 -0.02 1.42 16 7 N -0.51 -10.33 4.70 -237.51 -1.12 -11.45 16 8 C 0.13 2.92 2.74 -4.97 -0.01 2.90 16 9 C -0.49 -12.92 5.80 -34.44 -0.20 -13.12 16 10 H 0.08 2.36 7.25 -52.49 -0.38 1.98 16 11 C 0.07 1.91 5.29 -17.82 -0.09 1.82 16 12 N -0.90 -26.56 13.96 55.43 0.77 -25.79 16 13 Si 0.86 20.70 26.54 -169.99 -4.51 16.19 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.00 6.59 56.52 0.37 -5.63 16 17 C 0.07 1.31 4.58 -3.82 -0.02 1.29 16 18 C -0.10 -1.62 0.77 -154.51 -0.12 -1.74 16 19 C -0.14 -2.87 7.23 37.16 0.27 -2.60 16 20 C -0.13 -1.92 8.17 37.16 0.30 -1.61 16 21 C -0.17 -2.60 6.33 37.15 0.24 -2.37 16 22 N -0.46 -8.04 10.53 -8.06 -0.08 -8.13 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 25 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 26 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 27 H 0.08 1.30 3.22 -51.93 -0.17 1.13 16 28 H 0.09 1.65 7.95 -51.93 -0.41 1.23 16 29 H 0.04 0.77 1.38 -51.93 -0.07 0.70 16 30 H 0.02 0.44 7.25 -51.93 -0.38 0.07 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.08 1.70 6.88 -51.93 -0.36 1.35 16 33 H 0.05 0.87 5.31 -51.92 -0.28 0.60 16 34 H 0.10 2.34 5.09 -51.93 -0.26 2.07 16 35 H 0.02 0.39 7.72 -51.93 -0.40 -0.01 16 36 H 0.06 1.40 4.22 -51.93 -0.22 1.18 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.66 8.12 -51.93 -0.42 0.23 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.38 3.82 -51.93 -0.20 1.18 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.69 6.52 -51.93 -0.34 0.36 16 LS Contribution 318.21 15.07 4.80 4.80 Total: -1.00 -29.53 318.21 -8.09 -37.62 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.01 Total: 3.61 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 0.38 Total: -15.80 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.43 Total: -45.37 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.51 Total: 16.19 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.32 Total: -1.05 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.53 -8.09 -37.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081671715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.521 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds