Wall clock time and date at job start Tue Mar 31 2020 06:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33641 * 122.74373 * 2 1 4 4 S 1.76204 * 107.92163 * 179.97438 * 3 2 1 5 5 C 1.70981 * 90.27887 * 0.27544 * 4 3 2 6 6 C 1.50697 * 124.91097 * 179.83910 * 5 4 3 7 7 N 1.46897 * 109.47331 * 263.82152 * 6 5 4 8 8 C 1.46904 * 111.00187 * 189.34066 * 7 6 5 9 9 C 1.50698 * 109.46857 * 170.04921 * 8 7 6 10 10 H 1.07998 * 120.00491 * 2.21039 * 9 8 7 11 11 C 1.37880 * 119.99919 * 182.20521 * 9 8 7 12 12 N 1.31514 * 120.00426 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99889 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.47028 * 89.99633 * 13 11 9 15 15 H 1.48492 * 109.47175 * 209.99564 * 13 11 9 16 16 H 1.48503 * 109.47016 * 329.99875 * 13 11 9 17 17 C 1.46903 * 111.00285 * 65.38786 * 7 6 5 18 18 C 1.53003 * 109.47124 * 80.46666 * 17 7 6 19 19 C 1.52996 * 109.46942 * 77.72070 * 18 17 7 20 20 C 1.53003 * 109.46787 * 197.71674 * 18 17 7 21 21 C 1.52994 * 109.47213 * 317.71876 * 18 17 7 22 22 N 1.29024 * 110.16738 * 359.83935 * 5 4 3 23 23 H 1.09006 * 109.47659 * 269.70492 * 1 2 3 24 24 H 1.09009 * 109.47123 * 149.70901 * 1 2 3 25 25 H 1.08998 * 109.47570 * 29.71099 * 1 2 3 26 26 H 1.08000 * 126.04103 * 0.03542 * 3 2 1 27 27 H 1.09002 * 109.47721 * 23.82355 * 6 5 4 28 28 H 1.09007 * 109.47189 * 143.82093 * 6 5 4 29 29 H 1.09001 * 109.47139 * 290.04500 * 8 7 6 30 30 H 1.08995 * 109.46777 * 50.05050 * 8 7 6 31 31 H 0.97001 * 120.00121 * 180.02562 * 12 11 9 32 32 H 1.08992 * 109.47454 * 200.47469 * 17 7 6 33 33 H 1.09008 * 109.46749 * 320.47027 * 17 7 6 34 34 H 1.09004 * 109.46934 * 22.25667 * 19 18 17 35 35 H 1.08994 * 109.47687 * 142.25804 * 19 18 17 36 36 H 1.08997 * 109.47063 * 262.26184 * 19 18 17 37 37 H 1.09002 * 109.47165 * 60.00563 * 20 18 17 38 38 H 1.09001 * 109.46406 * 180.02562 * 20 18 17 39 39 H 1.08995 * 109.47531 * 300.00330 * 20 18 17 40 40 H 1.08997 * 109.47174 * 63.56269 * 21 18 17 41 41 H 1.08996 * 109.47165 * 183.56078 * 21 18 17 42 42 H 1.09005 * 109.47359 * 303.56302 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2298 1.1241 0.0000 4 16 3.9332 0.6733 0.0007 5 6 3.5039 -0.9817 -0.0072 6 6 4.4835 -2.1268 -0.0142 7 7 4.6870 -2.5888 -1.3937 8 6 5.4586 -3.8386 -1.4220 9 6 5.4394 -4.4092 -2.8166 10 1 4.9376 -3.8770 -3.6110 11 6 6.0627 -5.6109 -3.0783 12 7 6.0456 -6.1093 -4.2953 13 14 6.9304 -6.5319 -1.7041 14 1 5.9723 -7.4561 -1.0457 15 1 8.0619 -7.3110 -2.2677 16 1 7.4464 -5.5607 -0.7062 17 6 5.3360 -1.5511 -2.2061 18 6 6.8422 -1.5609 -1.9377 19 6 7.4873 -2.7245 -2.6932 20 6 7.4537 -0.2418 -2.4144 21 6 7.0919 -1.7260 -0.4373 22 7 2.2199 -1.1082 -0.0065 23 1 -0.3635 -0.0053 1.0277 24 1 -0.3634 -0.8874 -0.5184 25 1 -0.3634 0.8925 -0.5093 26 1 1.8390 2.1309 0.0005 27 1 5.4346 -1.7940 0.4016 28 1 4.0900 -2.9453 0.5888 29 1 6.4881 -3.6367 -1.1261 30 1 5.0155 -4.5548 -0.7301 31 1 6.4838 -6.9549 -4.4793 32 1 5.1537 -1.7495 -3.2622 33 1 4.9265 -0.5754 -1.9439 34 1 6.8454 -3.0188 -3.5236 35 1 8.4590 -2.4143 -3.0773 36 1 7.6168 -3.5694 -2.0169 37 1 6.9942 0.5872 -1.8762 38 1 8.5269 -0.2491 -2.2236 39 1 7.2759 -0.1242 -3.4833 40 1 6.7122 -2.6939 -0.1102 41 1 8.1621 -1.6696 -0.2387 42 1 6.5792 -0.9321 0.1059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081671715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:28 Heat of formation + Delta-G solvation = 71.716035 kcal Electronic energy + Delta-G solvation = -21393.188211 eV Core-core repulsion = 18501.383713 eV Total energy + Delta-G solvation = -2891.804498 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.33961 -40.43502 -35.38793 -34.86075 -32.97306 -30.81989 -29.45358 -28.50488 -27.70428 -27.45018 -26.09303 -23.47790 -21.90960 -20.64272 -19.69136 -19.01731 -18.49836 -17.02947 -16.72252 -16.45709 -16.02988 -15.57181 -15.44729 -14.90034 -14.73459 -14.49307 -14.19302 -13.93126 -13.40746 -13.32961 -13.20705 -13.10588 -12.82326 -12.57411 -12.55043 -12.46345 -12.34607 -12.20789 -12.08883 -11.80748 -11.58950 -11.49759 -11.20446 -11.09810 -10.57790 -10.49768 -10.27005 -9.57584 -8.68203 -8.17863 -6.10804 -0.22484 0.46639 0.82714 1.35654 1.37468 1.45358 1.86067 2.39175 3.15344 3.17102 3.38888 3.94411 3.98324 4.03505 4.11582 4.29972 4.33950 4.40203 4.55903 4.60867 4.69369 4.72351 4.78681 4.86648 4.87343 4.90067 4.96122 4.98578 5.03845 5.12471 5.18813 5.27634 5.32807 5.40401 5.47541 5.59763 5.67498 5.95562 6.07004 6.40573 6.70421 6.84631 6.93642 7.42957 8.99072 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020602 B = 0.005855 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.775775 B = 4781.239760 C = 5484.015888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.041 3.959 3 C -0.263 4.263 4 S 0.144 5.856 5 C 0.053 3.947 6 C 0.088 3.912 7 N -0.534 5.534 8 C 0.139 3.861 9 C -0.475 4.475 10 H 0.032 0.968 11 C 0.014 3.986 12 N -0.951 5.951 13 Si 0.923 3.077 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.239 1.239 17 C 0.077 3.923 18 C -0.094 4.094 19 C -0.137 4.137 20 C -0.130 4.130 21 C -0.165 4.165 22 N -0.497 5.497 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.097 0.903 26 H 0.208 0.792 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.038 0.962 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.506 17.472 12.091 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 C -0.402 4.402 4 S 0.399 5.601 5 C -0.225 4.225 6 C -0.042 4.042 7 N -0.258 5.258 8 C 0.013 3.987 9 C -0.514 4.514 10 H 0.050 0.950 11 C -0.182 4.182 12 N -0.593 5.593 13 Si 0.748 3.252 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.162 1.162 17 C -0.051 4.051 18 C -0.095 4.095 19 C -0.194 4.194 20 C -0.187 4.187 21 C -0.221 4.221 22 N -0.213 5.213 23 H 0.105 0.895 24 H 0.079 0.921 25 H 0.116 0.884 26 H 0.224 0.776 27 H 0.124 0.876 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.191 17.246 11.809 20.935 hybrid contribution -0.086 -1.117 0.103 1.125 sum -1.276 16.129 11.912 20.091 Atomic orbital electron populations 1.20425 0.85545 1.03783 1.03667 1.20848 0.99692 0.86522 1.02014 1.27202 0.94805 1.04778 1.13427 1.83596 1.07862 1.01310 1.67345 1.27010 0.93799 0.99077 1.02647 1.21615 0.96507 0.93710 0.92349 1.61938 1.50542 1.04447 1.08865 1.20926 0.94465 0.87284 0.96009 1.20909 1.31732 1.04582 0.94151 0.94973 1.25532 0.97472 0.98007 0.97168 1.70033 1.46695 1.20640 1.21919 0.86086 0.78698 0.79713 0.80696 1.20280 1.21256 1.16227 1.22233 0.91788 0.93758 0.97345 1.21104 0.95952 0.96642 0.95829 1.22435 0.99031 0.96738 1.01207 1.21813 1.00815 0.95184 1.00922 1.22670 1.02630 1.01735 0.95073 1.66122 1.05663 1.33231 1.16290 0.89527 0.92056 0.88411 0.77559 0.87622 0.89949 0.92766 0.97109 0.92909 0.93811 0.91123 0.92319 0.94350 0.93235 0.91441 0.91656 0.93237 0.91880 0.91094 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 10.31 71.24 0.73 -0.75 16 2 C 0.04 1.09 6.74 41.52 0.28 1.37 16 3 C -0.26 -5.69 11.13 66.78 0.74 -4.94 16 4 S 0.14 3.37 21.63 -56.49 -1.22 2.15 16 5 C 0.05 1.68 6.06 88.52 0.54 2.22 16 6 C 0.09 2.98 4.97 85.56 0.43 3.40 16 7 N -0.53 -21.99 4.70 -905.35 -4.25 -26.24 16 8 C 0.14 6.36 2.74 85.56 0.23 6.60 16 9 C -0.48 -26.40 5.80 25.60 0.15 -26.25 16 10 H 0.03 2.05 7.25 -2.91 -0.02 2.03 16 11 C 0.01 0.82 5.29 84.66 0.45 1.27 16 12 N -0.95 -58.93 13.96 21.45 0.30 -58.64 16 13 Si 0.92 43.17 26.54 68.60 1.82 44.99 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 15 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 16 H -0.24 -9.99 6.59 99.48 0.66 -9.33 16 17 C 0.08 2.88 4.58 86.30 0.40 3.27 16 18 C -0.09 -3.03 0.77 -52.18 -0.04 -3.07 16 19 C -0.14 -5.46 7.23 71.98 0.52 -4.94 16 20 C -0.13 -3.32 8.17 71.98 0.59 -2.73 16 21 C -0.17 -4.60 6.33 71.98 0.46 -4.14 16 22 N -0.50 -17.02 10.53 -179.41 -1.89 -18.91 16 23 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 24 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.10 1.37 8.12 -2.39 -0.02 1.35 16 26 H 0.21 2.82 8.06 -2.91 -0.02 2.80 16 27 H 0.11 3.02 3.22 -2.39 -0.01 3.01 16 28 H 0.08 2.90 7.95 -2.38 -0.02 2.88 16 29 H 0.06 2.34 1.38 -2.39 0.00 2.34 16 30 H 0.01 0.51 7.25 -2.39 -0.02 0.50 16 31 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.04 1.93 6.88 -2.39 -0.02 1.92 16 33 H 0.07 2.31 5.31 -2.38 -0.01 2.30 16 34 H 0.06 2.84 5.09 -2.39 -0.01 2.83 16 35 H 0.04 1.35 7.72 -2.39 -0.02 1.33 16 36 H 0.05 2.09 4.22 -2.39 -0.01 2.08 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.49 8.12 -2.39 -0.02 1.47 16 39 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 2.00 3.82 -2.39 -0.01 1.99 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 1.70 6.52 -2.38 -0.02 1.69 16 Total: -1.00 -68.36 318.21 1.20 -67.15 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.98 Total: 18.19 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 5.47 Total: -28.69 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -5.84 Total: -103.79 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.82 Total: 44.99 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -1.22 Total: 2.15 kcal Total: -68.36 1.20 -67.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081671715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.871 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds