Wall clock time and date at job start Tue Mar 31 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99705 * 2 1 4 4 C 1.39878 * 120.00254 * 180.02562 * 2 1 3 5 5 C 1.38919 * 119.99899 * 359.97438 * 4 2 1 6 6 C 1.38032 * 120.00667 * 180.27565 * 5 4 2 7 7 C 1.38956 * 119.99371 * 359.47371 * 6 5 4 8 8 N 1.39800 * 120.00295 * 180.25324 * 7 6 5 9 9 C 1.38736 * 120.00052 * 36.01754 * 8 7 6 10 10 C 1.39637 * 119.84491 * 28.38149 * 9 8 7 11 11 C 1.36298 * 120.15302 * 179.75986 * 10 9 8 12 12 C 1.40906 * 119.84311 * 0.52629 * 11 10 9 13 13 C 1.41096 * 120.15164 * 179.69594 * 12 11 10 14 14 H 1.07998 * 119.99851 * 24.26320 * 13 12 11 15 15 C 1.39831 * 120.00011 * 204.25478 * 13 12 11 16 16 N 1.30926 * 119.99890 * 19.34174 * 15 13 12 17 17 Si 1.86797 * 120.00107 * 199.33072 * 15 13 12 18 18 H 1.48502 * 109.47046 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47083 * 120.00227 * 17 15 13 20 20 H 1.48494 * 109.47523 * 240.00732 * 17 15 13 21 21 C 1.40910 * 119.69790 * 359.72604 * 12 11 10 22 22 C 1.36297 * 119.84131 * 359.97438 * 21 12 11 23 23 C 1.38954 * 119.99070 * 0.54574 * 7 6 5 24 24 C 1.38035 * 119.99464 * 359.70731 * 23 7 6 25 25 H 1.08997 * 109.47195 * 269.99482 * 1 2 3 26 26 H 1.09000 * 109.47595 * 29.99700 * 1 2 3 27 27 H 1.09004 * 109.47132 * 149.99452 * 1 2 3 28 28 H 1.08992 * 109.47464 * 270.00352 * 3 2 1 29 29 H 1.09001 * 109.46892 * 30.00617 * 3 2 1 30 30 H 1.08997 * 109.46928 * 150.00177 * 3 2 1 31 31 H 1.08004 * 119.99042 * 359.97438 * 5 4 2 32 32 H 1.07997 * 119.99754 * 179.70332 * 6 5 4 33 33 H 0.97001 * 120.00490 * 216.02135 * 8 7 6 34 34 H 1.07994 * 119.91984 * 0.02562 * 10 9 8 35 35 H 1.08001 * 120.07859 * 180.23494 * 11 10 9 36 36 H 0.97004 * 119.99734 * 179.97438 * 16 15 13 37 37 H 1.07999 * 120.07844 * 180.02562 * 21 12 11 38 38 H 1.08004 * 119.92109 * 179.97438 * 22 21 12 39 39 H 1.08002 * 120.00490 * 179.68308 * 23 7 6 40 40 H 1.08001 * 119.99450 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1644 -1.2113 -0.0005 5 6 1.4699 -2.4144 -0.0005 6 6 2.1599 -3.6099 0.0047 7 6 3.5495 -3.6099 -0.0011 8 7 4.2485 -4.8206 -0.0012 9 6 3.7509 -5.9089 -0.7031 10 6 2.9569 -5.7029 -1.8331 11 6 2.4687 -6.7676 -2.5302 12 6 2.7578 -8.0784 -2.1016 13 6 2.2505 -9.1852 -2.8147 14 1 1.9910 -9.0825 -3.8580 15 6 2.0840 -10.4151 -2.1706 16 7 2.0272 -10.4671 -0.8636 17 14 1.9423 -11.9838 -3.1748 18 1 2.0365 -11.6564 -4.6202 19 1 3.0427 -12.9096 -2.8046 20 1 0.6354 -12.6324 -2.8981 21 6 3.5553 -8.2788 -0.9574 22 6 4.0420 -7.2051 -0.2733 23 6 4.2441 -2.4064 -0.0007 24 6 3.5536 -1.2112 -0.0007 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 2.3791 1.5835 -1.0276 29 1 1.6083 2.0284 0.5139 30 1 3.1499 1.1385 0.5138 31 1 0.3898 -2.4143 0.0003 32 1 1.6198 -4.5451 0.0095 33 1 5.0815 -4.8998 0.4895 34 1 2.7327 -4.6977 -2.1579 35 1 1.8579 -6.6068 -3.4062 36 1 1.9113 -11.3203 -0.4168 37 1 3.7811 -9.2808 -0.6237 38 1 4.6531 -7.3572 0.6042 39 1 5.3241 -2.4062 -0.0001 40 1 4.0935 -0.2758 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082715579.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:31 Heat of formation + Delta-G solvation = 63.830752 kcal Electronic energy + Delta-G solvation = -20731.657938 eV Core-core repulsion = 17704.067557 eV Total energy + Delta-G solvation = -3027.590381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.55168 -37.98189 -36.33326 -34.32721 -32.83045 -30.90091 -29.81582 -29.08273 -28.09868 -27.85658 -24.92533 -23.78525 -22.13549 -21.14708 -20.58427 -19.90689 -17.44166 -17.19311 -16.34403 -16.07648 -15.24079 -15.10579 -14.99281 -14.27426 -13.93772 -13.60086 -13.29775 -13.15292 -12.74667 -12.70014 -12.31440 -12.23026 -12.06238 -11.94727 -11.82629 -11.67670 -11.40855 -11.08549 -11.01572 -10.67698 -10.50847 -9.95727 -9.75773 -9.41851 -9.12071 -8.64411 -8.55054 -7.54207 -7.20793 -6.73755 -6.19345 -4.15614 1.78204 1.98778 2.83486 3.07890 3.10919 3.16002 3.25617 3.26740 3.97657 4.24939 4.34081 4.68306 4.97022 5.01235 5.17840 5.29471 5.33547 5.54433 5.59814 5.63356 5.73888 5.78939 5.87862 5.96832 6.25276 6.31856 6.40952 6.49252 6.55484 6.88292 6.89191 7.05891 7.11176 7.16992 7.28137 7.42841 7.56886 7.61877 7.70316 7.84143 8.07566 8.27599 8.48450 8.61042 8.70670 8.95109 9.05739 10.24053 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.034056 B = 0.003242 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.987722 B = 8634.637249 C = 9080.879751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.647 5.647 3 C 0.100 3.900 4 C 0.162 3.838 5 C -0.160 4.160 6 C -0.113 4.113 7 C 0.156 3.844 8 N -0.687 5.687 9 C 0.043 3.957 10 C -0.121 4.121 11 C -0.202 4.202 12 C 0.092 3.908 13 C -0.462 4.462 14 H 0.076 0.924 15 C 0.075 3.925 16 N -0.797 5.797 17 Si 0.904 3.096 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.276 1.276 21 C -0.141 4.141 22 C -0.135 4.135 23 C -0.138 4.138 24 C -0.164 4.164 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.392 0.608 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.278 0.722 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 15.723 3.163 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.363 5.363 3 C -0.043 4.043 4 C 0.063 3.937 5 C -0.183 4.183 6 C -0.135 4.135 7 C 0.055 3.945 8 N -0.311 5.311 9 C -0.051 4.051 10 C -0.142 4.142 11 C -0.222 4.222 12 C 0.089 3.911 13 C -0.492 4.492 14 H 0.094 0.906 15 C -0.142 4.142 16 N -0.423 5.423 17 Si 0.729 3.271 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.161 4.161 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.187 4.187 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.226 0.774 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.134 0.866 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.017 15.647 3.275 15.986 hybrid contribution 0.142 -0.764 -0.148 0.791 sum 0.159 14.883 3.127 15.209 Atomic orbital electron populations 1.21517 0.80160 1.02218 1.00594 1.46099 1.04396 1.02895 1.82882 1.21491 0.97078 0.85242 1.00534 1.17634 0.91028 0.85343 0.99728 1.20487 0.99124 0.90671 1.08018 1.20891 0.93086 0.97875 1.01638 1.17612 0.91048 0.85890 0.99924 1.41454 1.25542 1.08279 1.55790 1.17204 1.06795 0.85762 0.95352 1.20113 1.01748 0.97413 0.94924 1.20578 1.06432 0.92588 1.02637 1.17578 0.89893 0.91685 0.91935 1.19479 1.38070 0.93726 0.97878 0.90574 1.25864 0.92620 1.00834 0.94852 1.69888 1.35599 1.27558 1.09209 0.86332 0.78411 0.81151 0.81235 1.18470 1.19806 1.20125 1.20878 0.99544 0.97360 0.98349 1.20210 1.03928 0.91656 0.99787 1.20588 0.98988 0.90993 1.05480 1.20330 0.91871 0.97582 1.08935 0.94019 0.92222 0.91410 0.94074 0.92248 0.91652 0.86441 0.85544 0.77377 0.89037 0.88919 0.91094 0.86379 0.89339 0.86634 0.86646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.94 10.19 59.85 0.61 1.55 16 2 N -0.65 -7.60 3.41 -187.48 -0.64 -8.24 16 3 C 0.10 0.89 10.19 59.85 0.61 1.50 16 4 C 0.16 2.32 6.56 -83.68 -0.55 1.77 16 5 C -0.16 -2.48 9.20 -39.41 -0.36 -2.84 16 6 C -0.11 -2.00 7.99 -39.39 -0.31 -2.31 16 7 C 0.16 2.72 5.72 -83.69 -0.48 2.24 16 8 N -0.69 -12.70 5.40 -8.27 -0.04 -12.74 16 9 C 0.04 0.95 5.95 -83.70 -0.50 0.46 16 10 C -0.12 -2.78 8.07 -39.76 -0.32 -3.10 16 11 C -0.20 -5.01 9.74 -39.27 -0.38 -5.39 16 12 C 0.09 2.45 5.57 -106.79 -0.60 1.85 16 13 C -0.46 -12.31 9.02 -37.90 -0.34 -12.65 16 14 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 15 C 0.08 1.90 5.10 -17.34 -0.09 1.81 16 16 N -0.80 -20.68 11.02 55.54 0.61 -20.07 16 17 Si 0.90 18.79 29.60 -169.99 -5.03 13.75 16 18 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 C -0.14 -3.65 8.64 -39.27 -0.34 -3.99 16 22 C -0.13 -3.13 9.88 -39.76 -0.39 -3.52 16 23 C -0.14 -2.08 9.96 -39.39 -0.39 -2.47 16 24 C -0.16 -2.29 9.20 -39.40 -0.36 -2.66 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 27 H 0.07 0.67 6.20 -51.93 -0.32 0.35 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 30 H 0.06 0.56 6.19 -51.93 -0.32 0.23 16 31 H 0.12 1.61 6.14 -52.48 -0.32 1.29 16 32 H 0.13 2.47 7.02 -52.49 -0.37 2.11 16 33 H 0.39 6.36 8.91 -40.82 -0.36 5.99 16 34 H 0.09 2.00 6.69 -52.49 -0.35 1.65 16 35 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 37 H 0.12 3.15 6.19 -52.49 -0.32 2.82 16 38 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 39 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.12 1.34 6.13 -52.49 -0.32 1.02 16 LS Contribution 328.02 15.07 4.94 4.94 Total: -1.00 -28.51 328.02 -9.56 -38.07 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.20 Total: 12.04 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -4.20 Total: -27.75 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: -0.07 Total: -41.05 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.51 -9.56 -38.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082715579.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.896 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds