Wall clock time and date at job start Tue Mar 31 2020 06:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00119 * 2 1 4 4 C 1.39680 * 119.99529 * 179.97438 * 2 1 3 5 5 C 1.39004 * 120.03495 * 5.31506 * 4 2 1 6 6 C 1.38156 * 120.08313 * 179.97438 * 5 4 2 7 7 C 1.38159 * 120.15073 * 0.02562 * 6 5 4 8 8 C 1.39013 * 120.07023 * 0.02562 * 7 6 5 9 9 N 1.39586 * 120.04242 * 179.97438 * 8 7 6 10 10 C 1.38816 * 119.99798 * 328.58763 * 9 8 7 11 11 C 1.39601 * 119.84596 * 335.77295 * 10 9 8 12 12 C 1.36314 * 120.16107 * 179.76797 * 11 10 9 13 13 C 1.40901 * 119.83539 * 0.50812 * 12 11 10 14 14 C 1.41106 * 120.15476 * 179.72044 * 13 12 11 15 15 H 1.07996 * 119.99983 * 206.62793 * 14 13 12 16 16 C 1.39844 * 119.99627 * 26.62895 * 14 13 12 17 17 N 1.30910 * 120.00115 * 12.25967 * 16 14 13 18 18 Si 1.86805 * 119.99981 * 192.25838 * 16 14 13 19 19 H 1.48497 * 109.46969 * 90.00084 * 18 16 14 20 20 H 1.48504 * 109.47080 * 209.99980 * 18 16 14 21 21 H 1.48504 * 109.46870 * 330.00146 * 18 16 14 22 22 C 1.40907 * 119.69348 * 359.74899 * 13 12 11 23 23 C 1.36306 * 119.84207 * 359.97438 * 22 13 12 24 24 C 1.38736 * 120.03229 * 185.60789 * 4 2 1 25 25 H 1.09008 * 109.46951 * 270.00106 * 1 2 3 26 26 H 1.08992 * 109.47108 * 29.99443 * 1 2 3 27 27 H 1.08996 * 109.47445 * 150.00329 * 1 2 3 28 28 H 1.09001 * 109.46855 * 186.71507 * 3 2 1 29 29 H 1.08996 * 109.46732 * 306.71408 * 3 2 1 30 30 H 1.09000 * 109.47213 * 66.71710 * 3 2 1 31 31 H 1.07998 * 119.95742 * 359.97438 * 5 4 2 32 32 H 1.07991 * 119.92303 * 180.02562 * 6 5 4 33 33 H 1.07997 * 119.96070 * 180.02562 * 7 6 5 34 34 H 0.97001 * 120.00009 * 148.85518 * 9 8 7 35 35 H 1.08003 * 119.92028 * 0.02562 * 11 10 9 36 36 H 1.07994 * 120.08259 * 180.28114 * 12 11 10 37 37 H 0.97009 * 120.00255 * 179.97438 * 17 16 14 38 38 H 1.08006 * 120.07735 * 179.97438 * 22 13 12 39 39 H 1.08001 * 119.92019 * 179.97438 * 23 22 13 40 40 H 1.08004 * 120.07518 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1633 -1.2097 0.0005 5 6 1.4734 -2.4114 -0.1104 6 6 2.1631 -3.6084 -0.1105 7 6 3.5403 -3.6159 0.0001 8 6 4.2365 -2.4179 0.1125 9 7 5.6278 -2.4261 0.2247 10 6 6.2669 -3.4842 0.8563 11 6 5.5758 -4.2532 1.7943 12 6 6.1956 -5.2967 2.4149 13 6 7.5405 -5.5916 2.1155 14 6 8.1905 -6.6665 2.7583 15 1 9.2631 -6.6520 2.8833 16 6 7.4458 -7.7506 3.2334 17 7 6.1935 -7.8902 2.8783 18 14 8.2378 -8.9994 4.3747 19 1 8.0492 -8.5714 5.7841 20 1 7.6045 -10.3272 4.1716 21 1 9.6895 -9.0924 4.0756 22 6 8.2336 -4.8078 1.1717 23 6 7.5995 -3.7709 0.5546 24 6 3.5457 -1.2134 0.1179 25 1 -0.3633 0.0000 1.0278 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3634 -0.8900 -0.5138 28 1 3.2631 1.0730 -0.1202 29 1 1.8471 1.8905 -0.8238 30 1 2.0274 1.7865 0.9440 31 1 0.3969 -2.4092 -0.1966 32 1 1.6246 -4.5404 -0.1972 33 1 4.0764 -4.5534 -0.0007 34 1 6.1478 -1.6906 -0.1352 35 1 4.5462 -4.0235 2.0258 36 1 5.6584 -5.8936 3.1369 37 1 5.6769 -8.6425 3.2075 38 1 9.2647 -5.0280 0.9378 39 1 8.1296 -3.1690 -0.1687 40 1 4.0837 -0.2813 0.2086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082715611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:36 Heat of formation + Delta-G solvation = 66.270318 kcal Electronic energy + Delta-G solvation = -20880.713452 eV Core-core repulsion = 17853.228859 eV Total energy + Delta-G solvation = -3027.484593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.59446 -38.01713 -36.28016 -34.52285 -33.00515 -30.43536 -29.72993 -29.17919 -28.61646 -27.36190 -24.89711 -24.28667 -22.00591 -21.09111 -20.68741 -19.68766 -17.37985 -17.29206 -16.46812 -15.57236 -15.30936 -15.07443 -14.98538 -14.73853 -13.94491 -13.61556 -13.48791 -13.04713 -12.82067 -12.64596 -12.41069 -12.23179 -12.01451 -11.84492 -11.77164 -11.56562 -11.18396 -11.03843 -10.80704 -10.65230 -10.56108 -10.06909 -9.76362 -9.53384 -9.26858 -8.99076 -7.93981 -7.55244 -7.08909 -6.68489 -6.41836 -4.19720 1.89776 2.06215 2.84664 3.05894 3.10820 3.13845 3.20042 3.26045 3.97852 4.19418 4.34877 4.71739 4.93822 5.04620 5.22342 5.36706 5.42782 5.54850 5.59313 5.70437 5.72078 5.90097 6.01560 6.05971 6.11257 6.20010 6.31405 6.56031 6.83691 6.87851 6.96059 7.08841 7.11830 7.17031 7.28265 7.41414 7.52450 7.61998 7.72304 7.83260 8.06788 8.22536 8.40338 8.55185 8.68250 8.94529 9.02659 10.27579 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.030159 B = 0.003506 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.192606 B = 7984.609871 C = 8579.569477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.643 5.643 3 C 0.093 3.907 4 C 0.238 3.762 5 C -0.249 4.249 6 C -0.044 4.044 7 C -0.215 4.215 8 C 0.248 3.752 9 N -0.677 5.677 10 C 0.040 3.960 11 C -0.130 4.130 12 C -0.136 4.136 13 C 0.091 3.909 14 C -0.460 4.460 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.803 5.803 18 Si 0.909 3.091 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.264 1.264 22 C -0.201 4.201 23 C -0.128 4.128 24 C -0.264 4.264 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.394 0.606 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.279 0.721 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.920 11.697 -4.524 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.357 5.357 3 C -0.050 4.050 4 C 0.138 3.862 5 C -0.272 4.272 6 C -0.063 4.063 7 C -0.238 4.238 8 C 0.145 3.855 9 N -0.297 5.297 10 C -0.054 4.054 11 C -0.151 4.151 12 C -0.155 4.155 13 C 0.088 3.912 14 C -0.490 4.490 15 H 0.093 0.907 16 C -0.144 4.144 17 N -0.429 5.429 18 Si 0.734 3.266 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.221 4.221 23 C -0.149 4.149 24 C -0.290 4.290 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.228 0.772 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.180 11.555 -4.427 15.408 hybrid contribution 0.468 -0.280 0.335 0.640 sum -8.712 11.276 -4.092 14.825 Atomic orbital electron populations 1.21534 0.80007 1.02194 1.00822 1.46184 1.04632 1.03169 1.81692 1.21609 0.97922 0.85134 1.00332 1.17439 0.90474 0.85268 0.93042 1.20370 0.98970 0.91156 1.16723 1.20641 0.93581 0.96818 0.95290 1.20928 0.94237 0.97812 1.10791 1.17466 0.83668 0.92826 0.91542 1.41650 1.02604 1.23454 1.62033 1.17251 0.92960 0.94716 1.00475 1.20429 0.98786 0.98133 0.97755 1.21063 0.96231 0.96746 1.01501 1.17622 0.92048 0.91543 0.89950 1.19476 0.95067 1.01877 1.32624 0.90675 1.25864 0.94705 0.98738 0.95103 1.69825 1.08630 1.28353 1.36095 0.86295 0.80256 0.79251 0.80759 1.19436 1.20388 1.18781 1.20582 0.99549 1.00238 1.01760 1.19973 0.93758 0.99562 1.01636 1.20169 0.92258 0.97051 1.19571 0.93839 0.92169 0.91276 0.90437 0.93111 0.93577 0.86942 0.86555 0.85455 0.77243 0.88396 0.85757 0.91051 0.88773 0.89330 0.86560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.91 10.35 59.85 0.62 1.53 16 2 N -0.64 -7.78 3.41 -187.58 -0.64 -8.42 16 3 C 0.09 0.90 10.58 59.85 0.63 1.54 16 4 C 0.24 3.55 6.54 -83.81 -0.55 3.00 16 5 C -0.25 -3.68 9.25 -39.33 -0.36 -4.04 16 6 C -0.04 -0.70 10.03 -39.64 -0.40 -1.10 16 7 C -0.21 -3.98 7.65 -39.32 -0.30 -4.28 16 8 C 0.25 4.47 5.92 -83.81 -0.50 3.97 16 9 N -0.68 -12.52 5.42 -8.33 -0.05 -12.57 16 10 C 0.04 0.88 6.10 -83.68 -0.51 0.37 16 11 C -0.13 -3.09 7.73 -39.77 -0.31 -3.40 16 12 C -0.14 -3.52 8.62 -39.27 -0.34 -3.86 16 13 C 0.09 2.42 5.57 -106.79 -0.60 1.82 16 14 C -0.46 -12.20 9.05 -37.89 -0.34 -12.55 16 15 H 0.08 1.92 7.87 -52.49 -0.41 1.50 16 16 C 0.07 1.81 5.24 -17.34 -0.09 1.72 16 17 N -0.80 -20.84 10.76 55.54 0.60 -20.24 16 18 Si 0.91 18.87 29.58 -169.99 -5.03 13.84 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 C -0.20 -4.88 9.74 -39.27 -0.38 -5.26 16 23 C -0.13 -2.84 9.87 -39.77 -0.39 -3.23 16 24 C -0.26 -4.18 9.17 -39.17 -0.36 -4.54 16 25 H 0.04 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 27 H 0.07 0.62 6.00 -51.93 -0.31 0.31 16 28 H 0.08 0.77 5.42 -51.93 -0.28 0.49 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.11 1.41 6.03 -52.49 -0.32 1.09 16 32 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.13 2.65 6.48 -52.49 -0.34 2.30 16 34 H 0.39 6.25 8.87 -40.82 -0.36 5.89 16 35 H 0.10 2.25 6.17 -52.48 -0.32 1.92 16 36 H 0.12 3.36 6.09 -52.49 -0.32 3.04 16 37 H 0.28 6.62 8.30 -40.82 -0.34 6.29 16 38 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16 39 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.12 1.64 5.85 -52.48 -0.31 1.33 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -28.41 325.63 -9.45 -37.85 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -5.07 Total: 12.94 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -4.17 Total: -28.31 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.09 Total: -41.23 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.41 -9.45 -37.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082715611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.124 kcal (2) G-P(sol) polarization free energy of solvation -28.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds