Wall clock time and date at job start Tue Mar 31 2020 07:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 2 7 7 N 1.29031 * 124.91736 * 89.99650 * 6 5 4 8 8 C 1.31780 * 117.12711 * 179.97438 * 7 6 5 9 9 C 1.50702 * 122.74877 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.47001 * 275.00016 * 9 8 7 11 11 C 1.46903 * 111.00211 * 293.95902 * 10 9 8 12 12 C 1.46896 * 111.00102 * 169.99913 * 10 9 8 13 13 C 1.50699 * 109.47404 * 190.00082 * 12 10 9 14 14 H 1.08001 * 119.99687 * 0.02562 * 13 12 10 15 15 C 1.37873 * 120.00246 * 180.02562 * 13 12 10 16 16 N 1.31510 * 119.99830 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00185 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47139 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47114 * 119.99500 * 17 15 13 20 20 H 1.48501 * 109.47290 * 239.99948 * 17 15 13 21 21 C 1.33637 * 114.50002 * 0.02562 * 8 7 6 22 22 S 1.70980 * 124.91855 * 269.69899 * 6 5 4 23 23 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 24 24 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 25 25 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 27 27 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 28 28 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 29 29 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 31 31 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 33 33 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 34 34 H 1.08994 * 109.46947 * 34.99794 * 9 8 7 35 35 H 1.08994 * 109.46656 * 155.00335 * 9 8 7 36 36 H 1.09002 * 109.47428 * 59.99485 * 11 10 9 37 37 H 1.08993 * 109.47227 * 180.02562 * 11 10 9 38 38 H 1.09003 * 109.46779 * 300.00081 * 11 10 9 39 39 H 1.09001 * 109.46989 * 310.00268 * 12 10 9 40 40 H 1.09001 * 109.46545 * 70.00162 * 12 10 9 41 41 H 0.97003 * 120.00270 * 180.02562 * 16 15 13 42 42 H 1.07997 * 126.03814 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1881 6 6 4.0670 -1.5418 2.4183 7 7 4.2262 -2.8182 2.5205 8 6 4.6765 -3.2774 3.6707 9 6 4.9094 -4.7439 3.9281 10 7 3.6524 -5.3714 4.3570 11 6 3.2227 -4.8514 5.6620 12 6 3.7785 -6.8346 4.3889 13 6 2.4186 -7.4518 4.5907 14 1 1.5476 -6.8202 4.6853 15 6 2.2862 -8.8227 4.6546 16 7 3.3467 -9.5917 4.5389 17 14 0.6006 -9.5877 4.9055 18 1 -0.4203 -8.5139 5.0063 19 1 0.2806 -10.4690 3.7539 20 1 0.6015 -10.3882 6.1563 21 6 4.9098 -2.3360 4.5901 22 16 4.5154 -0.7732 3.8783 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8898 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.7515 -0.1582 2.1370 31 1 1.6053 -1.7197 1.2953 32 1 3.8531 -1.3940 0.3004 33 1 3.9994 0.1675 1.1421 34 1 5.2607 -5.2219 3.0138 35 1 5.6593 -4.8607 4.7105 36 1 3.0695 -3.7745 5.5914 37 1 2.2901 -5.3329 5.9558 38 1 3.9900 -5.0611 6.4072 39 1 4.1996 -7.1836 3.4461 40 1 4.4346 -7.1248 5.2095 41 1 3.2536 -10.5562 4.5834 42 1 5.2796 -2.5031 5.5910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083217272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:13 Heat of formation + Delta-G solvation = 23.853477 kcal Electronic energy + Delta-G solvation = -19601.705860 eV Core-core repulsion = 16707.825886 eV Total energy + Delta-G solvation = -2893.879974 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.81053 -37.23783 -36.21522 -32.85773 -32.14687 -29.45095 -27.38553 -27.32698 -26.96403 -25.24335 -23.93229 -21.84454 -20.37325 -20.15087 -19.50185 -17.38074 -16.30318 -15.55909 -15.43086 -15.02671 -14.61033 -14.32910 -14.24777 -13.94407 -13.72940 -13.36060 -12.88415 -12.76259 -12.44521 -12.40382 -11.96916 -11.91052 -11.75617 -11.44480 -11.20448 -11.02742 -10.91437 -10.86256 -10.82516 -10.69408 -10.59749 -10.44670 -9.85990 -9.39128 -9.21915 -9.18441 -8.55063 -8.40879 -7.23148 -6.00901 -4.01761 0.88038 1.51376 1.87594 3.03086 3.32615 3.39831 3.45340 4.12850 4.45315 4.65895 4.69924 4.73066 5.02585 5.14084 5.19609 5.29808 5.34566 5.37270 5.43724 5.49316 5.56012 5.62099 5.66503 5.69609 5.86079 5.88333 5.95766 6.03797 6.11118 6.17679 6.21294 6.22490 6.34724 6.43103 6.74647 7.28874 7.33126 7.81294 8.02467 8.10872 8.20577 8.55177 9.05790 9.62146 11.10126 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016632 B = 0.003783 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.140018 B = 7399.617109 C = 8590.419716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.151 4.151 4 C -0.110 4.110 5 C -0.041 4.041 6 C 0.053 3.947 7 N -0.448 5.448 8 C 0.099 3.901 9 C 0.124 3.876 10 N -0.531 5.531 11 C 0.036 3.964 12 C 0.194 3.806 13 C -0.504 4.504 14 H 0.064 0.936 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.258 4.258 22 S 0.081 5.919 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.040 0.960 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.011 0.989 39 H 0.032 0.968 40 H -0.008 1.008 41 H 0.260 0.740 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 22.196 -5.224 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.208 4.208 4 C -0.149 4.149 5 C -0.082 4.082 6 C -0.226 4.226 7 N -0.162 5.162 8 C -0.033 4.033 9 C -0.007 4.007 10 N -0.256 5.256 11 C -0.112 4.112 12 C 0.069 3.931 13 C -0.543 4.543 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.398 4.398 22 S 0.335 5.665 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.029 0.971 39 H 0.050 0.950 40 H 0.010 0.990 41 H 0.070 0.930 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.658 22.813 -5.665 23.515 hybrid contribution -0.056 -1.687 1.063 1.995 sum 0.602 21.126 -4.603 21.629 Atomic orbital electron populations 1.21836 0.95059 1.02080 1.01575 1.21113 0.95924 0.96135 0.98275 1.21924 1.01089 0.96077 1.01701 1.21667 0.93370 1.01783 0.98053 1.20318 0.96274 0.98992 0.92638 1.27045 1.03344 0.92335 0.99865 1.66079 1.14068 1.11491 1.24575 1.20369 0.97504 0.97930 0.87467 1.20606 0.92605 0.86752 1.00782 1.62049 1.26929 1.09144 1.27474 1.22256 1.00849 0.98374 0.89762 1.19762 0.97384 0.79491 0.96470 1.21182 0.93385 0.91099 1.48633 0.91828 1.24983 0.96910 0.97202 0.95554 1.69968 1.28626 1.04390 1.50906 0.86441 0.84192 0.79187 0.77611 1.19671 1.20969 1.21136 1.26785 1.13720 0.93818 1.05452 1.83705 1.61529 1.11649 1.09601 0.92724 0.92783 0.92389 0.90894 0.92815 0.92673 0.92484 0.91718 0.90716 0.88873 0.89852 0.89574 0.94163 0.93812 0.90632 0.97081 0.94999 0.99003 0.92991 0.81047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.19 37.16 0.34 -0.86 16 2 C -0.10 -0.79 2.92 -90.62 -0.26 -1.05 16 3 C -0.15 -1.04 8.95 37.16 0.33 -0.71 16 4 C -0.11 -1.11 4.66 -26.73 -0.12 -1.23 16 5 C -0.04 -0.43 5.55 -27.89 -0.15 -0.58 16 6 C 0.05 0.73 6.64 -13.46 -0.09 0.64 16 7 N -0.45 -7.81 10.53 -8.06 -0.08 -7.89 16 8 C 0.10 1.72 5.57 -84.23 -0.47 1.25 16 9 C 0.12 2.39 5.41 -4.97 -0.03 2.36 16 10 N -0.53 -12.09 4.74 -245.83 -1.17 -13.26 16 11 C 0.04 0.74 9.07 60.07 0.55 1.28 16 12 C 0.19 5.18 4.72 -4.98 -0.02 5.15 16 13 C -0.50 -14.49 8.46 -34.44 -0.29 -14.78 16 14 H 0.06 1.83 7.12 -52.49 -0.37 1.45 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 17 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.26 -3.74 9.88 29.12 0.29 -3.45 16 22 S 0.08 0.98 23.18 -107.50 -2.49 -1.51 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.68 6.56 -51.93 -0.34 0.34 16 34 H 0.09 1.72 7.93 -51.93 -0.41 1.31 16 35 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 36 H 0.04 0.80 6.47 -51.93 -0.34 0.46 16 37 H 0.07 1.65 6.76 -51.93 -0.35 1.30 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.03 0.91 7.93 -51.93 -0.41 0.50 16 40 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -31.38 352.42 -9.94 -41.33 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -7.19 Total: -4.14 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -0.03 Total: -10.50 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.51 Total: -47.45 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.49 Total: -1.51 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.38 -9.94 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.179 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds