Wall clock time and date at job start Tue Mar 31 2020 07:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 2 7 7 N 1.29031 * 124.91736 * 89.99650 * 6 5 4 8 8 C 1.31780 * 117.12711 * 179.97438 * 7 6 5 9 9 C 1.50702 * 122.74877 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.47001 * 275.00016 * 9 8 7 11 11 C 1.46903 * 111.00211 * 293.95902 * 10 9 8 12 12 C 1.46896 * 111.00102 * 169.99913 * 10 9 8 13 13 C 1.50699 * 109.47404 * 190.00082 * 12 10 9 14 14 H 1.08001 * 119.99687 * 0.02562 * 13 12 10 15 15 C 1.37873 * 120.00246 * 180.02562 * 13 12 10 16 16 N 1.31510 * 119.99830 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00185 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47139 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47114 * 119.99500 * 17 15 13 20 20 H 1.48501 * 109.47290 * 239.99948 * 17 15 13 21 21 C 1.33637 * 114.50002 * 0.02562 * 8 7 6 22 22 S 1.70980 * 124.91855 * 269.69899 * 6 5 4 23 23 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 24 24 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 25 25 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 27 27 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 28 28 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 29 29 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 31 31 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 33 33 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 34 34 H 1.08994 * 109.46947 * 34.99794 * 9 8 7 35 35 H 1.08994 * 109.46656 * 155.00335 * 9 8 7 36 36 H 1.09002 * 109.47428 * 59.99485 * 11 10 9 37 37 H 1.08993 * 109.47227 * 180.02562 * 11 10 9 38 38 H 1.09003 * 109.46779 * 300.00081 * 11 10 9 39 39 H 1.09001 * 109.46989 * 310.00268 * 12 10 9 40 40 H 1.09001 * 109.46545 * 70.00162 * 12 10 9 41 41 H 0.97003 * 120.00270 * 180.02562 * 16 15 13 42 42 H 1.07997 * 126.03814 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1881 6 6 4.0670 -1.5418 2.4183 7 7 4.2262 -2.8182 2.5205 8 6 4.6765 -3.2774 3.6707 9 6 4.9094 -4.7439 3.9281 10 7 3.6524 -5.3714 4.3570 11 6 3.2227 -4.8514 5.6620 12 6 3.7785 -6.8346 4.3889 13 6 2.4186 -7.4518 4.5907 14 1 1.5476 -6.8202 4.6853 15 6 2.2862 -8.8227 4.6546 16 7 3.3467 -9.5917 4.5389 17 14 0.6006 -9.5877 4.9055 18 1 -0.4203 -8.5139 5.0063 19 1 0.2806 -10.4690 3.7539 20 1 0.6015 -10.3882 6.1563 21 6 4.9098 -2.3360 4.5901 22 16 4.5154 -0.7732 3.8783 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8898 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.7515 -0.1582 2.1370 31 1 1.6053 -1.7197 1.2953 32 1 3.8531 -1.3940 0.3004 33 1 3.9994 0.1675 1.1421 34 1 5.2607 -5.2219 3.0138 35 1 5.6593 -4.8607 4.7105 36 1 3.0695 -3.7745 5.5914 37 1 2.2901 -5.3329 5.9558 38 1 3.9900 -5.0611 6.4072 39 1 4.1996 -7.1836 3.4461 40 1 4.4346 -7.1248 5.2095 41 1 3.2536 -10.5562 4.5834 42 1 5.2796 -2.5031 5.5910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083217272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:13 Heat of formation + Delta-G solvation = 4.534561 kcal Electronic energy + Delta-G solvation = -19602.543591 eV Core-core repulsion = 16707.825886 eV Total energy + Delta-G solvation = -2894.717705 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01351 -38.30180 -37.63212 -34.78520 -33.37788 -30.70291 -29.10274 -28.61434 -27.95025 -26.33183 -25.64945 -23.16708 -22.05553 -20.86101 -20.63172 -18.72819 -18.31518 -16.93056 -16.48921 -16.36230 -16.14082 -15.75138 -15.42444 -15.16118 -15.02862 -14.50796 -14.16465 -13.81035 -13.71708 -13.57145 -13.36910 -13.05158 -12.92227 -12.81673 -12.68648 -12.59458 -12.39952 -12.23383 -12.18381 -11.82295 -11.69387 -11.49581 -11.42823 -11.32239 -10.64423 -10.48847 -10.29702 -9.65574 -9.04789 -8.22274 -6.32519 -0.22027 0.47104 0.76481 1.39244 1.40418 1.53994 1.80003 2.39662 3.09830 3.10253 3.44283 3.78764 3.99250 3.99701 4.16220 4.22008 4.32304 4.36830 4.42053 4.58426 4.61603 4.63148 4.69789 4.78648 4.83852 4.89985 4.98465 5.01885 5.08362 5.12864 5.16192 5.18594 5.20304 5.25509 5.36148 5.52621 5.56471 5.61962 6.01046 6.28170 6.55102 6.82572 6.92950 7.36898 8.89091 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016632 B = 0.003783 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.140018 B = 7399.617109 C = 8590.419716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.104 4.104 5 C -0.040 4.040 6 C 0.042 3.958 7 N -0.495 5.495 8 C 0.072 3.928 9 C 0.127 3.873 10 N -0.545 5.545 11 C 0.044 3.956 12 C 0.210 3.790 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.971 3.029 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.275 1.275 21 C -0.261 4.261 22 S 0.162 5.838 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.020 0.980 39 H 0.002 0.998 40 H -0.030 1.030 41 H 0.265 0.735 42 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.309 24.730 -4.824 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.143 4.143 5 C -0.081 4.081 6 C -0.237 4.237 7 N -0.210 5.210 8 C -0.060 4.060 9 C -0.003 4.003 10 N -0.270 5.270 11 C -0.104 4.104 12 C 0.084 3.916 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.795 3.205 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.200 1.200 21 C -0.401 4.401 22 S 0.418 5.582 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.020 0.980 40 H -0.013 1.013 41 H 0.074 0.926 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.079 25.384 -5.266 25.925 hybrid contribution 0.225 -2.352 0.924 2.537 sum 0.146 23.032 -4.343 23.438 Atomic orbital electron populations 1.21847 0.95094 1.01431 1.02275 1.21090 0.95900 0.97040 0.97135 1.21907 1.01574 0.94741 1.02312 1.21606 0.93062 1.00369 0.99303 1.20479 0.96395 1.00017 0.91209 1.27574 1.02408 0.91846 1.01831 1.66030 1.15953 1.13642 1.25389 1.19999 1.00326 0.96917 0.88779 1.20495 0.91307 0.88449 1.00068 1.61927 1.29233 1.06836 1.28983 1.22183 1.00057 0.99376 0.88776 1.19388 0.96030 0.82328 0.93866 1.21448 0.93931 0.91727 1.49060 0.92223 1.25912 1.01154 0.97640 0.94886 1.70087 1.31005 1.04885 1.51422 0.85313 0.79032 0.78250 0.77890 1.18948 1.20323 1.20041 1.27067 1.12136 0.95091 1.05792 1.83387 1.59324 1.08556 1.06965 0.92484 0.91626 0.93740 0.91035 0.91998 0.92325 0.91690 0.91315 0.93760 0.89295 0.86853 0.91544 0.92952 0.91410 0.92462 0.96176 0.97993 1.01250 0.92582 0.79233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.19 71.98 0.66 -1.59 16 2 C -0.09 -1.39 2.92 -10.79 -0.03 -1.42 16 3 C -0.15 -1.63 8.95 71.98 0.64 -0.99 16 4 C -0.10 -1.99 4.66 30.59 0.14 -1.85 16 5 C -0.04 -0.77 5.55 29.85 0.17 -0.61 16 6 C 0.04 1.09 6.64 88.52 0.59 1.67 16 7 N -0.50 -17.26 10.53 -179.40 -1.89 -19.15 16 8 C 0.07 2.47 5.57 41.52 0.23 2.70 16 9 C 0.13 5.08 5.41 85.56 0.46 5.54 16 10 N -0.55 -25.55 4.74 -931.67 -4.42 -29.97 16 11 C 0.04 1.80 9.07 127.69 1.16 2.96 16 12 C 0.21 11.74 4.72 85.56 0.40 12.14 16 13 C -0.52 -30.88 8.46 25.60 0.22 -30.66 16 14 H 0.06 3.49 7.12 -2.91 -0.02 3.47 16 15 C 0.00 0.12 5.46 84.65 0.46 0.58 16 16 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 17 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 21 C -0.26 -7.03 9.88 66.78 0.66 -6.37 16 22 S 0.16 3.44 23.18 -56.49 -1.31 2.13 16 23 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.61 6.56 -2.39 -0.02 0.60 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.11 1.47 6.56 -2.39 -0.02 1.46 16 34 H 0.07 2.83 7.93 -2.39 -0.02 2.81 16 35 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 36 H 0.07 2.40 6.47 -2.39 -0.02 2.39 16 37 H 0.06 2.51 6.76 -2.39 -0.02 2.50 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.00 0.12 7.93 -2.39 -0.02 0.10 16 40 H -0.03 -1.78 8.12 -2.39 -0.02 -1.80 16 41 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.19 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -69.25 352.42 1.43 -67.82 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 0.97 Total: 6.65 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 5.77 Total: -17.88 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -6.02 Total: -106.15 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.31 Total: 2.13 kcal Total: -69.25 1.43 -67.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.354 kcal (2) G-P(sol) polarization free energy of solvation -69.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds