Wall clock time and date at job start Tue Mar 31 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47264 * 2 1 4 4 C 1.36944 * 119.99860 * 275.65557 * 3 2 1 5 5 H 1.08000 * 119.99910 * 34.00734 * 4 3 2 6 6 C 1.38812 * 120.00027 * 214.00501 * 4 3 2 7 7 N 1.31621 * 119.99985 * 22.91502 * 6 4 3 8 8 Si 1.86790 * 120.00077 * 202.91778 * 6 4 3 9 9 H 1.48503 * 109.47589 * 89.99931 * 8 6 4 10 10 H 1.48507 * 109.47190 * 210.00130 * 8 6 4 11 11 H 1.48504 * 109.47096 * 329.99824 * 8 6 4 12 12 C 1.46496 * 119.99990 * 95.65881 * 3 2 1 13 13 C 1.50704 * 109.46844 * 269.99653 * 12 3 2 14 14 C 1.38342 * 119.94285 * 269.72107 * 13 12 3 15 15 C 1.38295 * 120.25071 * 180.27439 * 14 13 12 16 16 C 1.38038 * 120.12314 * 0.02562 * 15 14 13 17 17 C 1.39341 * 119.87187 * 359.97438 * 16 15 14 18 18 C 1.48368 * 120.11718 * 180.02562 * 17 16 15 19 19 C 1.39766 * 120.90137 * 179.70332 * 18 17 16 20 20 C 1.37981 * 119.02372 * 179.75135 * 19 18 17 21 21 N 1.31927 * 120.87576 * 0.53693 * 20 19 18 22 22 C 1.31926 * 122.00347 * 359.71186 * 21 20 19 23 23 C 1.37979 * 120.88467 * 0.02562 * 22 21 20 24 24 C 1.37994 * 119.93514 * 90.00200 * 13 12 3 25 25 H 1.08999 * 109.47619 * 300.00082 * 1 2 3 26 26 H 1.08999 * 109.47220 * 60.00072 * 1 2 3 27 27 H 1.09004 * 109.47670 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47024 * 239.99622 * 2 1 3 29 29 H 1.09004 * 109.46883 * 120.00251 * 2 1 3 30 30 H 0.96995 * 120.00244 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47043 * 149.99846 * 12 3 2 32 32 H 1.08996 * 109.47358 * 30.00176 * 12 3 2 33 33 H 1.08003 * 119.87019 * 0.26007 * 14 13 12 34 34 H 1.08001 * 119.94089 * 179.97438 * 15 14 13 35 35 H 1.07993 * 120.06589 * 180.02562 * 16 15 14 36 36 H 1.08005 * 120.48977 * 359.97438 * 19 18 17 37 37 H 1.07993 * 119.56247 * 180.24881 * 20 19 18 38 38 H 1.08008 * 119.55567 * 180.02562 * 22 21 20 39 39 H 1.07997 * 120.48728 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.06564 * 359.70353 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1364 2.0657 -1.1802 5 1 1.4323 1.8888 -1.9798 6 6 3.1610 2.9869 -1.3488 7 7 4.2517 2.8993 -0.6173 8 14 2.9919 4.3508 -2.6137 9 1 2.3638 5.5383 -1.9805 10 1 4.3355 4.7173 -3.1292 11 1 2.1418 3.8814 -3.7373 12 6 2.3804 2.0300 1.2625 13 6 1.1715 2.7239 1.8354 14 6 0.9112 4.0421 1.5060 15 6 -0.1932 4.6868 2.0326 16 6 -1.0421 4.0175 2.8910 17 6 -0.7848 2.6897 3.2262 18 6 -1.6939 1.9650 4.1479 19 6 -1.4549 0.6312 4.4903 20 6 -2.3226 -0.0038 5.3550 21 7 -3.3709 0.6280 5.8474 22 6 -3.6351 1.8848 5.5456 23 6 -2.8159 2.5957 4.6927 24 6 0.3295 2.0450 2.6923 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.9678 3.5427 -0.7353 31 1 3.1679 2.7618 1.0821 32 1 2.7368 1.2793 1.9678 33 1 1.5732 4.5697 0.8353 34 1 -0.3914 5.7161 1.7724 35 1 -1.9045 4.5217 3.3013 36 1 -0.6015 0.1064 4.0870 37 1 -2.1440 -1.0331 5.6286 38 1 -4.5042 2.3637 5.9719 39 1 -3.0384 3.6241 4.4497 40 1 0.5334 1.0159 2.9486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:35 Heat of formation + Delta-G solvation = 62.674402 kcal Electronic energy + Delta-G solvation = -21563.467641 eV Core-core repulsion = 18535.827117 eV Total energy + Delta-G solvation = -3027.640524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.24696 -39.91042 -37.61773 -34.58288 -33.87449 -32.79021 -32.03845 -30.78578 -30.14319 -27.47057 -25.40907 -25.06885 -24.37189 -22.50644 -22.33690 -21.37966 -18.77375 -18.19981 -17.20511 -17.09934 -16.85968 -16.34754 -15.81238 -15.66860 -15.37144 -15.19758 -14.90651 -14.70338 -14.25830 -14.18144 -13.95317 -13.62829 -13.41231 -13.10474 -13.06188 -12.71002 -12.55094 -12.35876 -12.28123 -11.93812 -11.75999 -11.65913 -11.53687 -11.17805 -10.53683 -10.44285 -10.07941 -9.58211 -9.18536 -8.62096 -7.84241 -5.41862 -0.31569 0.24353 0.58017 1.04289 1.42934 1.46469 1.53568 2.49190 2.77709 3.12894 3.24180 3.51015 3.62366 3.78998 3.85534 4.07092 4.13887 4.18469 4.26485 4.33416 4.41367 4.53419 4.66864 4.69301 4.76797 4.80738 4.84518 4.91205 4.99554 5.05623 5.19835 5.22641 5.23948 5.26548 5.55120 5.56996 5.63823 5.70043 5.75063 5.79077 5.98353 6.15297 6.46056 7.04954 7.14743 7.85021 8.35928 9.11767 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024440 B = 0.004691 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.372922 B = 5967.327652 C = 6617.236941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 N -0.591 5.591 4 C -0.257 4.257 5 H 0.050 0.950 6 C -0.029 4.029 7 N -0.913 5.913 8 Si 0.944 3.056 9 H -0.282 1.282 10 H -0.293 1.293 11 H -0.274 1.274 12 C 0.173 3.827 13 C -0.084 4.084 14 C -0.112 4.112 15 C -0.124 4.124 16 C -0.113 4.113 17 C -0.071 4.071 18 C -0.002 4.002 19 C -0.176 4.176 20 C 0.096 3.904 21 N -0.515 5.515 22 C 0.095 3.905 23 C -0.170 4.170 24 C -0.099 4.099 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.050 0.950 30 H 0.253 0.747 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.094 0.906 34 H 0.140 0.860 35 H 0.151 0.849 36 H 0.142 0.858 37 H 0.178 0.822 38 H 0.183 0.817 39 H 0.157 0.843 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.723 -0.418 11.121 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.012 3.988 3 N -0.311 5.311 4 C -0.388 4.388 5 H 0.068 0.932 6 C -0.226 4.226 7 N -0.557 5.557 8 Si 0.773 3.227 9 H -0.208 1.208 10 H -0.219 1.219 11 H -0.199 1.199 12 C 0.048 3.952 13 C -0.087 4.087 14 C -0.131 4.131 15 C -0.142 4.142 16 C -0.132 4.132 17 C -0.071 4.071 18 C -0.010 4.010 19 C -0.196 4.196 20 C -0.060 4.060 21 N -0.224 5.224 22 C -0.061 4.061 23 C -0.190 4.190 24 C -0.118 4.118 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.113 0.887 34 H 0.158 0.842 35 H 0.169 0.831 36 H 0.160 0.840 37 H 0.195 0.805 38 H 0.200 0.800 39 H 0.175 0.825 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.107 -0.835 11.657 17.561 hybrid contribution 1.086 1.212 -1.654 2.321 sum -12.021 0.378 10.002 15.643 Atomic orbital electron populations 1.22200 0.97919 1.00604 1.00637 1.20979 0.93286 0.85481 0.99018 1.43941 1.75968 1.09357 1.01832 1.19133 1.06855 1.19069 0.93722 0.93233 1.25575 0.93924 1.03022 1.00112 1.70079 1.05187 1.36474 1.43995 0.85629 0.76691 0.80665 0.79738 1.20832 1.21945 1.19877 1.19943 0.93318 0.96421 0.85562 1.20912 0.98909 0.94124 0.94722 1.21182 0.98032 0.95113 0.98813 1.21269 0.94429 1.00762 0.97717 1.21348 1.00071 0.93473 0.98261 1.18784 0.95278 0.94527 0.98536 1.19333 0.93917 0.93733 0.93991 1.22427 1.02100 0.94895 1.00177 1.23028 0.89418 1.00883 0.92665 1.67686 1.19368 1.10956 1.24438 1.23144 0.99053 0.89807 0.94076 1.22465 0.94920 1.02675 0.98914 1.21095 0.94120 0.99513 0.97108 0.93253 0.95222 0.91580 0.94843 0.93122 0.93794 0.90472 0.94502 0.88728 0.84178 0.83097 0.84048 0.80524 0.79962 0.82522 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 10.20 71.98 0.73 -4.75 16 2 C 0.14 5.64 6.44 86.38 0.56 6.20 16 3 N -0.59 -28.66 2.44 -706.35 -1.73 -30.39 16 4 C -0.26 -13.85 9.48 84.03 0.80 -13.06 16 5 H 0.05 2.73 7.93 -2.91 -0.02 2.71 16 6 C -0.03 -1.56 4.95 84.86 0.42 -1.14 16 7 N -0.91 -51.75 11.31 21.65 0.24 -51.50 16 8 Si 0.94 43.73 29.61 68.60 2.03 45.76 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 12 C 0.17 7.99 5.46 85.64 0.47 8.46 16 13 C -0.08 -3.35 5.44 -19.90 -0.11 -3.46 16 14 C -0.11 -4.40 9.69 22.31 0.22 -4.18 16 15 C -0.12 -3.84 10.03 22.24 0.22 -3.62 16 16 C -0.11 -3.07 9.45 22.49 0.21 -2.85 16 17 C -0.07 -2.08 5.88 -20.04 -0.12 -2.20 16 18 C 0.00 -0.05 5.91 -19.84 -0.12 -0.16 16 19 C -0.18 -4.12 9.50 22.58 0.21 -3.90 16 20 C 0.10 2.05 11.17 84.62 0.95 2.99 16 21 N -0.51 -11.85 10.35 -196.12 -2.03 -13.88 16 22 C 0.10 1.85 11.17 84.62 0.95 2.79 16 23 C -0.17 -3.46 9.50 22.58 0.21 -3.25 16 24 C -0.10 -3.33 7.27 22.48 0.16 -3.17 16 25 H 0.05 1.74 6.12 -2.39 -0.01 1.73 16 26 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.03 1.42 8.09 -2.38 -0.02 1.40 16 29 H 0.05 1.88 7.83 -2.38 -0.02 1.87 16 30 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.08 4.10 5.25 -2.39 -0.01 4.09 16 32 H 0.04 1.60 7.80 -2.39 -0.02 1.58 16 33 H 0.09 4.15 8.06 -2.91 -0.02 4.13 16 34 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.15 2.94 6.30 -2.91 -0.02 2.93 16 36 H 0.14 3.07 6.34 -2.91 -0.02 3.05 16 37 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 39 H 0.16 2.37 6.34 -2.91 -0.02 2.36 16 40 H 0.12 3.84 6.26 -2.91 -0.02 3.82 16 Total: -1.00 -62.95 331.67 5.32 -57.62 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 1.04 Total: 17.69 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 5.77 Total: -25.30 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -3.51 Total: -95.77 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -62.95 5.32 -57.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.296 kcal (2) G-P(sol) polarization free energy of solvation -62.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds