Wall clock time and date at job start Tue Mar 31 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47026 * 2 1 4 4 C 1.36934 * 120.00299 * 275.65694 * 3 2 1 5 5 H 1.08003 * 119.99971 * 34.01078 * 4 3 2 6 6 C 1.38812 * 120.00119 * 214.00925 * 4 3 2 7 7 N 1.31614 * 120.00317 * 22.92549 * 6 4 3 8 8 Si 1.86807 * 119.99864 * 202.92891 * 6 4 3 9 9 H 1.48501 * 109.47169 * 90.00016 * 8 6 4 10 10 H 1.48493 * 109.46947 * 209.99884 * 8 6 4 11 11 H 1.48503 * 109.46932 * 330.00164 * 8 6 4 12 12 C 1.46502 * 119.99718 * 95.65737 * 3 2 1 13 13 C 1.50697 * 109.47458 * 269.99676 * 12 3 2 14 14 C 1.38347 * 119.93396 * 89.99726 * 13 12 3 15 15 C 1.38304 * 120.24714 * 180.02562 * 14 13 12 16 16 C 1.38038 * 120.12670 * 0.02717 * 15 14 13 17 17 C 1.39343 * 119.86835 * 359.97407 * 16 15 14 18 18 C 1.48345 * 120.11856 * 180.02562 * 17 16 15 19 19 C 1.39336 * 119.72903 * 4.99926 * 18 17 16 20 20 C 1.38399 * 119.06975 * 179.97438 * 19 18 17 21 21 C 1.38782 * 118.51096 * 359.97438 * 20 19 18 22 22 C 1.38247 * 119.36622 * 0.28171 * 21 20 19 23 23 N 1.31766 * 120.89427 * 359.41776 * 22 21 20 24 24 C 1.37993 * 119.94410 * 270.28612 * 13 12 3 25 25 H 1.09002 * 109.47310 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47416 * 299.99834 * 1 2 3 27 27 H 1.09003 * 109.47522 * 59.99483 * 1 2 3 28 28 H 1.08995 * 109.47299 * 240.00582 * 2 1 3 29 29 H 1.08998 * 109.47381 * 120.00059 * 2 1 3 30 30 H 0.97001 * 120.00366 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.46813 * 149.99969 * 12 3 2 32 32 H 1.08996 * 109.47477 * 29.99987 * 12 3 2 33 33 H 1.08000 * 119.87940 * 359.97438 * 14 13 12 34 34 H 1.08000 * 119.93895 * 180.02562 * 15 14 13 35 35 H 1.08000 * 120.06707 * 179.97438 * 16 15 14 36 36 H 1.08003 * 120.46491 * 359.95976 * 19 18 17 37 37 H 1.08000 * 120.74707 * 180.02562 * 20 19 18 38 38 H 1.08003 * 120.32096 * 180.02562 * 21 20 19 39 39 H 1.08001 * 119.55511 * 179.69823 * 22 21 20 40 40 H 1.08001 * 120.05982 * 0.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1363 2.0658 -1.1801 5 1 1.4321 1.8890 -1.9797 6 6 3.1609 2.9870 -1.3486 7 7 4.2517 2.8992 -0.6174 8 14 2.9916 4.3513 -2.6134 9 1 2.3637 5.5386 -1.9797 10 1 4.3350 4.7178 -3.1289 11 1 2.1412 3.8821 -3.7368 12 6 2.3803 2.0301 1.2626 13 6 1.1715 2.7240 1.8356 14 6 0.3273 2.0432 2.6946 15 6 -0.7842 2.6735 3.2238 16 6 -1.0575 3.9865 2.8968 17 6 -0.2106 4.6769 2.0321 18 6 -0.4986 6.0882 1.6774 19 6 -1.5580 6.7528 2.2919 20 6 -1.8142 8.0694 1.9511 21 6 -1.0011 8.6794 1.0061 22 6 0.0296 7.9587 0.4321 23 7 0.2554 6.7077 0.7788 24 6 0.9054 4.0352 1.4980 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 4.9679 3.5428 -0.7354 31 1 3.1678 2.7619 1.0822 32 1 2.7366 1.2794 1.9679 33 1 0.5365 1.0154 2.9522 34 1 -1.4397 2.1374 3.8942 35 1 -1.9259 4.4776 3.3103 36 1 -2.1707 6.2473 3.0237 37 1 -2.6280 8.6104 2.4108 38 1 -1.1745 9.7059 0.7187 39 1 0.6611 8.4288 -0.3072 40 1 1.5623 4.5641 0.8233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092399001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:21 Heat of formation + Delta-G solvation = 79.375794 kcal Electronic energy + Delta-G solvation = -21744.407167 eV Core-core repulsion = 18717.490870 eV Total energy + Delta-G solvation = -3026.916297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.11137 -38.43633 -35.77793 -32.68960 -32.32646 -31.82909 -30.94242 -29.05530 -28.55025 -25.60688 -23.83198 -23.71834 -23.08815 -21.18321 -20.66474 -19.84921 -17.21915 -16.53871 -16.05893 -15.66911 -15.58879 -14.86799 -14.12902 -13.99612 -13.94477 -13.70953 -13.50901 -13.19154 -12.93877 -12.71640 -12.37660 -12.02571 -11.88103 -11.61682 -11.27207 -11.07592 -10.77405 -10.62045 -10.45680 -10.38903 -9.94247 -9.91781 -9.84838 -9.76233 -9.35118 -9.19594 -8.44450 -8.04440 -7.77673 -6.59012 -5.75448 -3.28602 0.85110 1.37248 2.07519 2.21195 3.45282 3.51411 3.56313 3.93326 4.38436 4.50790 4.61075 4.76765 4.90413 5.09818 5.18314 5.35542 5.39346 5.52309 5.59172 5.66841 5.78124 5.88321 5.99788 6.08506 6.11171 6.20002 6.27860 6.41905 6.43379 6.47109 6.66442 6.68649 6.76295 6.81956 6.94317 7.02419 7.14793 7.22253 7.44666 7.61499 7.77454 7.86943 8.20689 8.53782 9.21486 9.85406 10.40831 11.24366 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.007085 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.739568 B = 3950.787915 C = 5495.858329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.143 3.857 3 N -0.576 5.576 4 C -0.251 4.251 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.280 1.280 12 C 0.169 3.831 13 C -0.076 4.076 14 C -0.105 4.105 15 C -0.134 4.134 16 C -0.120 4.120 17 C -0.070 4.070 18 C 0.186 3.814 19 C -0.172 4.172 20 C -0.076 4.076 21 C -0.189 4.189 22 C 0.107 3.893 23 N -0.471 5.471 24 C -0.051 4.051 25 H 0.034 0.966 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.255 0.745 31 H 0.110 0.890 32 H 0.033 0.967 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.154 0.846 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.709 6.261 7.717 14.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.017 3.983 3 N -0.295 5.295 4 C -0.381 4.381 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.528 5.528 8 Si 0.716 3.284 9 H -0.201 1.201 10 H -0.219 1.219 11 H -0.205 1.205 12 C 0.043 3.957 13 C -0.079 4.079 14 C -0.125 4.125 15 C -0.152 4.152 16 C -0.139 4.139 17 C -0.071 4.071 18 C 0.050 3.950 19 C -0.192 4.192 20 C -0.101 4.101 21 C -0.209 4.209 22 C -0.051 4.051 23 N -0.180 5.180 24 C -0.071 4.071 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.127 0.873 32 H 0.052 0.948 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.171 0.829 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.815 5.880 7.273 13.558 hybrid contribution -1.034 1.351 -0.322 1.731 sum -10.849 7.231 6.951 14.775 Atomic orbital electron populations 1.22396 1.00052 0.98849 1.01672 1.20842 0.91775 0.86971 0.98743 1.43754 1.75599 1.08039 1.02084 1.18998 1.07388 1.18742 0.92968 0.92256 1.25007 0.94112 1.01202 0.98327 1.69963 1.04618 1.35785 1.42452 0.86522 0.76879 0.83585 0.81371 1.20106 1.21916 1.20520 1.20148 0.92827 0.96975 0.85790 1.21303 0.99581 0.93524 0.93475 1.21157 0.94640 0.99231 0.97427 1.20862 0.98193 0.94733 1.01438 1.20894 0.99051 0.94930 0.99066 1.18499 0.97597 0.90674 1.00348 1.19988 0.90453 0.93543 0.90987 1.22080 0.99412 0.95511 1.02216 1.21457 0.98279 0.94503 0.95906 1.22112 0.97919 1.01444 0.99461 1.22779 0.95233 0.89857 0.97278 1.67782 1.27558 1.10037 1.12600 1.21300 0.95367 0.94203 0.96231 0.94714 0.93171 0.93382 0.93779 0.94741 0.93488 0.87307 0.94823 0.86866 0.86823 0.86849 0.84746 0.85093 0.85119 0.82889 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 10.20 37.15 0.38 -2.84 16 2 C 0.14 3.04 6.44 -4.04 -0.03 3.01 16 3 N -0.58 -14.27 2.44 -174.62 -0.43 -14.70 16 4 C -0.25 -6.90 9.48 -15.06 -0.14 -7.04 16 5 H 0.06 1.66 7.93 -52.48 -0.42 1.25 16 6 C 0.01 0.37 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -25.30 11.31 55.49 0.63 -24.67 16 8 Si 0.89 22.07 29.61 -169.99 -5.03 17.03 16 9 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 C 0.17 3.96 5.45 -5.19 -0.03 3.94 16 13 C -0.08 -1.59 5.44 -104.67 -0.57 -2.16 16 14 C -0.11 -1.87 7.86 -39.52 -0.31 -2.19 16 15 C -0.13 -2.09 10.03 -39.63 -0.40 -2.49 16 16 C -0.12 -1.90 9.41 -39.24 -0.37 -2.27 16 17 C -0.07 -1.32 5.87 -104.90 -0.62 -1.93 16 18 C 0.19 3.27 6.72 -82.94 -0.56 2.71 16 19 C -0.17 -2.35 9.46 -39.11 -0.37 -2.72 16 20 C -0.08 -0.87 10.17 -39.32 -0.40 -1.27 16 21 C -0.19 -2.24 10.11 -39.38 -0.40 -2.64 16 22 C 0.11 1.59 11.17 -17.58 -0.20 1.40 16 23 N -0.47 -8.89 9.44 -9.78 -0.09 -8.98 16 24 C -0.05 -1.11 9.22 -39.25 -0.36 -1.48 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.94 6.13 -51.93 -0.32 0.62 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.96 8.08 -51.93 -0.42 0.54 16 29 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.11 2.90 5.26 -51.93 -0.27 2.63 16 32 H 0.03 0.74 7.80 -51.93 -0.40 0.34 16 33 H 0.11 1.85 8.02 -52.49 -0.42 1.42 16 34 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.11 1.43 6.21 -52.49 -0.33 1.11 16 36 H 0.13 1.50 6.22 -52.48 -0.33 1.17 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.15 1.95 8.06 -52.49 -0.42 1.52 16 40 H 0.13 3.27 7.55 -52.49 -0.40 2.88 16 LS Contribution 333.99 15.07 5.03 5.03 Total: -1.00 -30.65 333.99 -9.72 -40.37 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.38 Total: 3.60 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -4.45 Total: -17.69 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.11 Total: -48.35 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.65 -9.72 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092399001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.744 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds