Wall clock time and date at job start Tue Mar 31 2020 06:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31774 * 122.75650 * 2 1 4 4 C 1.29023 * 117.13239 * 179.72676 * 3 2 1 5 5 S 1.70976 * 110.16379 * 0.02562 * 4 3 2 6 6 C 1.33643 * 122.74581 * 179.70389 * 2 1 3 7 7 C 1.50698 * 126.03727 * 0.25618 * 6 2 1 8 8 N 1.46907 * 109.46902 * 276.43983 * 7 6 2 9 9 C 1.46897 * 110.99896 * 287.74588 * 8 7 6 10 10 C 1.50703 * 109.47275 * 77.80537 * 9 8 7 11 11 H 1.08000 * 119.99915 * 4.55482 * 10 9 8 12 12 C 1.37869 * 119.99773 * 184.56079 * 10 9 8 13 13 N 1.31511 * 120.00581 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00036 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47340 * 89.99365 * 14 12 10 16 16 H 1.48496 * 109.47687 * 209.99855 * 14 12 10 17 17 H 1.48510 * 109.46781 * 329.99846 * 14 12 10 18 18 C 1.46899 * 111.00073 * 163.78868 * 8 7 6 19 19 C 1.52990 * 109.47346 * 190.00023 * 18 8 7 20 20 C 1.53005 * 109.47556 * 180.02562 * 19 18 8 21 21 C 1.53005 * 109.46741 * 65.00008 * 20 19 18 22 22 C 1.52994 * 109.47272 * 185.00165 * 20 19 18 23 23 H 1.09001 * 109.46836 * 90.75163 * 1 2 3 24 24 H 1.08996 * 109.47560 * 210.75266 * 1 2 3 25 25 H 1.09004 * 109.46844 * 330.75644 * 1 2 3 26 26 H 1.07996 * 124.92398 * 179.97438 * 4 3 2 27 27 H 1.09002 * 109.47706 * 36.44113 * 7 6 2 28 28 H 1.08999 * 109.47202 * 156.44216 * 7 6 2 29 29 H 1.09005 * 109.46647 * 197.79936 * 9 8 7 30 30 H 1.09000 * 109.47170 * 317.79886 * 9 8 7 31 31 H 0.96998 * 120.00280 * 179.97438 * 13 12 10 32 32 H 1.09007 * 109.47276 * 310.00748 * 18 8 7 33 33 H 1.09003 * 109.46782 * 70.00267 * 18 8 7 34 34 H 1.08999 * 109.47211 * 299.99994 * 19 18 8 35 35 H 1.09003 * 109.46981 * 60.00365 * 19 18 8 36 36 H 1.08997 * 109.46717 * 305.00571 * 20 19 18 37 37 H 1.09000 * 109.46782 * 180.02562 * 21 20 19 38 38 H 1.08998 * 109.47143 * 300.00614 * 21 20 19 39 39 H 1.08999 * 109.46648 * 60.00426 * 21 20 19 40 40 H 1.09000 * 109.47339 * 60.00336 * 22 20 19 41 41 H 1.09009 * 109.47009 * 180.02562 * 22 20 19 42 42 H 1.09004 * 109.47224 * 299.99764 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1082 0.0000 4 6 3.5040 0.9818 0.0055 5 16 3.9332 -0.6732 0.0108 6 6 2.2299 -1.1240 0.0058 7 6 1.6845 -2.5289 0.0076 8 7 1.3573 -2.9253 1.3838 9 6 2.5770 -3.1632 2.1672 10 6 3.1730 -1.8428 2.5823 11 1 2.6555 -0.9221 2.3569 12 6 4.3789 -1.8103 3.2498 13 7 5.0089 -2.9315 3.5247 14 14 5.1181 -0.1735 3.7638 15 1 4.6386 0.1809 5.1238 16 1 6.5992 -0.2803 3.7733 17 1 4.7040 0.8802 2.8027 18 6 0.4838 -4.1063 1.3979 19 6 -0.0355 -4.3396 2.8180 20 6 -0.9448 -5.5700 2.8328 21 6 -0.1235 -6.8153 2.4924 22 6 -1.5626 -5.7309 4.2232 23 1 -0.3633 -0.0135 -1.0276 24 1 -0.3634 -0.8831 0.5254 25 1 -0.3633 0.8967 0.5021 26 1 4.2061 1.8024 0.0058 27 1 0.7846 -2.5702 -0.6061 28 1 2.4327 -3.2096 -0.3984 29 1 2.3307 -3.7458 3.0550 30 1 3.2971 -3.7123 1.5605 31 1 5.8575 -2.9085 3.9940 32 1 -0.3583 -3.9434 0.7252 33 1 1.0477 -4.9792 1.0693 34 1 0.8066 -4.5026 3.4906 35 1 -0.5994 -3.4667 3.1466 36 1 -1.7375 -5.4448 2.0952 37 1 -0.7714 -7.6917 2.5026 38 1 0.3167 -6.7006 1.5019 39 1 0.6692 -6.9404 3.2300 40 1 -2.1477 -4.8438 4.4657 41 1 -2.2101 -6.6078 4.2339 42 1 -0.7699 -5.8561 4.9608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:01 Heat of formation + Delta-G solvation = 32.373638 kcal Electronic energy + Delta-G solvation = -20943.323419 eV Core-core repulsion = 18049.812907 eV Total energy + Delta-G solvation = -2893.510512 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.12677 -37.54781 -35.46269 -32.59328 -31.60240 -29.30826 -27.88304 -26.98917 -26.55937 -24.41115 -23.05880 -22.80887 -20.40514 -19.43125 -17.99476 -17.29520 -16.53352 -15.32122 -15.06417 -14.75625 -14.44980 -13.97630 -13.76202 -13.60829 -13.22048 -12.78645 -12.74937 -12.45644 -12.07975 -12.02122 -11.98297 -11.85668 -11.51800 -11.34767 -11.19070 -11.02854 -10.66467 -10.60750 -10.41490 -10.34200 -10.27421 -9.98401 -9.77595 -9.31895 -8.86476 -8.51976 -7.99614 -7.80729 -7.33316 -6.03095 -3.96591 1.55457 2.30900 2.68667 3.29349 3.36830 3.41001 3.56401 4.42306 4.81249 4.97722 5.12556 5.19232 5.31458 5.33848 5.57908 5.68077 5.71749 5.76858 5.81291 5.91784 5.94230 5.98371 6.02195 6.06810 6.07794 6.13119 6.17486 6.30263 6.36990 6.39121 6.44117 6.65703 6.71563 6.82250 7.02076 7.17237 7.28854 7.82889 8.07487 8.12116 8.50449 8.53343 9.05295 9.61374 11.07156 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014908 B = 0.006777 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.716884 B = 4130.489204 C = 5298.456172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.048 3.952 3 N -0.480 5.480 4 C -0.030 4.030 5 S 0.191 5.809 6 C -0.174 4.174 7 C 0.144 3.856 8 N -0.533 5.533 9 C 0.188 3.812 10 C -0.489 4.489 11 H 0.063 0.937 12 C 0.065 3.935 13 N -0.897 5.897 14 Si 0.872 3.128 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.267 1.267 18 C 0.059 3.941 19 C -0.110 4.110 20 C -0.095 4.095 21 C -0.148 4.148 22 C -0.145 4.145 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.181 0.819 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.033 0.967 30 H -0.005 1.005 31 H 0.260 0.740 32 H 0.057 0.943 33 H 0.025 0.975 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.904 -2.461 -6.188 10.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.086 4.086 3 N -0.196 5.196 4 C -0.325 4.325 5 S 0.448 5.552 6 C -0.297 4.297 7 C 0.014 3.986 8 N -0.257 5.257 9 C 0.063 3.937 10 C -0.529 4.529 11 H 0.082 0.918 12 C -0.136 4.136 13 N -0.537 5.537 14 Si 0.700 3.300 15 H -0.208 1.208 16 H -0.211 1.211 17 H -0.191 1.191 18 C -0.069 4.069 19 C -0.148 4.148 20 C -0.114 4.114 21 C -0.205 4.205 22 C -0.202 4.202 23 H 0.077 0.923 24 H 0.097 0.903 25 H 0.082 0.918 26 H 0.198 0.802 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.013 0.987 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.185 -2.095 -5.903 9.532 hybrid contribution 0.322 0.342 0.298 0.557 sum -6.863 -1.752 -5.605 9.032 Atomic orbital electron populations 1.20197 0.88169 1.03108 1.01172 1.19865 0.97513 0.86336 1.04846 1.66063 1.05081 1.31977 1.16449 1.27945 0.95465 1.01157 1.07980 1.83987 1.07610 1.01053 1.62597 1.25270 0.94793 0.99870 1.09758 1.20183 0.97764 0.89334 0.91353 1.62142 1.20156 1.33386 1.10060 1.19888 0.84146 0.97140 0.92507 1.21252 1.03786 0.93003 1.34850 0.91847 1.24799 0.97041 0.95755 0.95993 1.69933 1.16431 1.25737 1.41549 0.86871 0.78411 0.85154 0.79585 1.20756 1.21147 1.19124 1.22060 0.96002 0.91859 0.97017 1.21652 0.99287 0.96585 0.97238 1.21094 0.97679 0.95540 0.97066 1.21890 0.99865 0.96937 1.01833 1.21817 1.00451 1.00960 0.97005 0.92345 0.90280 0.91753 0.80193 0.90813 0.94802 0.94933 0.98745 0.93031 0.92421 0.95736 0.91024 0.91497 0.91789 0.93467 0.92583 0.92609 0.92819 0.93314 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 9.86 36.01 0.36 -0.72 16 2 C 0.05 0.94 6.64 -84.23 -0.56 0.38 16 3 N -0.48 -9.78 10.53 -11.90 -0.13 -9.90 16 4 C -0.03 -0.58 12.23 51.58 0.63 0.06 16 5 S 0.19 3.81 20.64 -107.50 -2.22 1.59 16 6 C -0.17 -3.45 3.97 -35.92 -0.14 -3.59 16 7 C 0.14 2.65 4.77 -4.97 -0.02 2.63 16 8 N -0.53 -10.68 4.45 -237.51 -1.06 -11.73 16 9 C 0.19 4.57 4.61 -4.98 -0.02 4.55 16 10 C -0.49 -12.89 5.99 -34.44 -0.21 -13.09 16 11 H 0.06 1.75 6.14 -52.49 -0.32 1.42 16 12 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 13 N -0.90 -25.58 13.29 55.43 0.74 -24.84 16 14 Si 0.87 21.37 29.54 -169.99 -5.02 16.34 16 15 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 C 0.06 0.97 4.70 -3.83 -0.02 0.96 16 19 C -0.11 -1.75 4.66 -26.73 -0.12 -1.87 16 20 C -0.09 -1.21 2.92 -90.62 -0.26 -1.47 16 21 C -0.15 -1.84 8.95 37.16 0.33 -1.51 16 22 C -0.14 -1.70 9.19 37.15 0.34 -1.36 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.08 1.26 7.51 -51.93 -0.39 0.87 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.18 2.88 8.06 -52.49 -0.42 2.46 16 27 H 0.07 1.16 7.43 -51.93 -0.39 0.77 16 28 H 0.03 0.64 7.79 -51.93 -0.40 0.23 16 29 H 0.03 0.85 5.85 -51.93 -0.30 0.54 16 30 H -0.01 -0.14 7.74 -51.93 -0.40 -0.54 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.06 0.84 7.86 -51.93 -0.41 0.43 16 33 H 0.02 0.41 6.54 -51.93 -0.34 0.07 16 34 H 0.07 1.33 6.24 -51.93 -0.32 1.01 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 343.03 15.07 5.17 5.17 Total: -1.00 -29.17 343.03 -9.30 -38.47 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.98 Total: -1.73 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 0.20 Total: -13.37 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -0.45 Total: -46.48 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -2.22 Total: 1.59 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.17 -9.30 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.846 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds