Wall clock time and date at job start Tue Mar 31 2020 06:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31774 * 122.75650 * 2 1 4 4 C 1.29023 * 117.13239 * 179.72676 * 3 2 1 5 5 S 1.70976 * 110.16379 * 0.02562 * 4 3 2 6 6 C 1.33643 * 122.74581 * 179.70389 * 2 1 3 7 7 C 1.50698 * 126.03727 * 0.25618 * 6 2 1 8 8 N 1.46907 * 109.46902 * 276.43983 * 7 6 2 9 9 C 1.46897 * 110.99896 * 287.74588 * 8 7 6 10 10 C 1.50703 * 109.47275 * 77.80537 * 9 8 7 11 11 H 1.08000 * 119.99915 * 4.55482 * 10 9 8 12 12 C 1.37869 * 119.99773 * 184.56079 * 10 9 8 13 13 N 1.31511 * 120.00581 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00036 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47340 * 89.99365 * 14 12 10 16 16 H 1.48496 * 109.47687 * 209.99855 * 14 12 10 17 17 H 1.48510 * 109.46781 * 329.99846 * 14 12 10 18 18 C 1.46899 * 111.00073 * 163.78868 * 8 7 6 19 19 C 1.52990 * 109.47346 * 190.00023 * 18 8 7 20 20 C 1.53005 * 109.47556 * 180.02562 * 19 18 8 21 21 C 1.53005 * 109.46741 * 65.00008 * 20 19 18 22 22 C 1.52994 * 109.47272 * 185.00165 * 20 19 18 23 23 H 1.09001 * 109.46836 * 90.75163 * 1 2 3 24 24 H 1.08996 * 109.47560 * 210.75266 * 1 2 3 25 25 H 1.09004 * 109.46844 * 330.75644 * 1 2 3 26 26 H 1.07996 * 124.92398 * 179.97438 * 4 3 2 27 27 H 1.09002 * 109.47706 * 36.44113 * 7 6 2 28 28 H 1.08999 * 109.47202 * 156.44216 * 7 6 2 29 29 H 1.09005 * 109.46647 * 197.79936 * 9 8 7 30 30 H 1.09000 * 109.47170 * 317.79886 * 9 8 7 31 31 H 0.96998 * 120.00280 * 179.97438 * 13 12 10 32 32 H 1.09007 * 109.47276 * 310.00748 * 18 8 7 33 33 H 1.09003 * 109.46782 * 70.00267 * 18 8 7 34 34 H 1.08999 * 109.47211 * 299.99994 * 19 18 8 35 35 H 1.09003 * 109.46981 * 60.00365 * 19 18 8 36 36 H 1.08997 * 109.46717 * 305.00571 * 20 19 18 37 37 H 1.09000 * 109.46782 * 180.02562 * 21 20 19 38 38 H 1.08998 * 109.47143 * 300.00614 * 21 20 19 39 39 H 1.08999 * 109.46648 * 60.00426 * 21 20 19 40 40 H 1.09000 * 109.47339 * 60.00336 * 22 20 19 41 41 H 1.09009 * 109.47009 * 180.02562 * 22 20 19 42 42 H 1.09004 * 109.47224 * 299.99764 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1082 0.0000 4 6 3.5040 0.9818 0.0055 5 16 3.9332 -0.6732 0.0108 6 6 2.2299 -1.1240 0.0058 7 6 1.6845 -2.5289 0.0076 8 7 1.3573 -2.9253 1.3838 9 6 2.5770 -3.1632 2.1672 10 6 3.1730 -1.8428 2.5823 11 1 2.6555 -0.9221 2.3569 12 6 4.3789 -1.8103 3.2498 13 7 5.0089 -2.9315 3.5247 14 14 5.1181 -0.1735 3.7638 15 1 4.6386 0.1809 5.1238 16 1 6.5992 -0.2803 3.7733 17 1 4.7040 0.8802 2.8027 18 6 0.4838 -4.1063 1.3979 19 6 -0.0355 -4.3396 2.8180 20 6 -0.9448 -5.5700 2.8328 21 6 -0.1235 -6.8153 2.4924 22 6 -1.5626 -5.7309 4.2232 23 1 -0.3633 -0.0135 -1.0276 24 1 -0.3634 -0.8831 0.5254 25 1 -0.3633 0.8967 0.5021 26 1 4.2061 1.8024 0.0058 27 1 0.7846 -2.5702 -0.6061 28 1 2.4327 -3.2096 -0.3984 29 1 2.3307 -3.7458 3.0550 30 1 3.2971 -3.7123 1.5605 31 1 5.8575 -2.9085 3.9940 32 1 -0.3583 -3.9434 0.7252 33 1 1.0477 -4.9792 1.0693 34 1 0.8066 -4.5026 3.4906 35 1 -0.5994 -3.4667 3.1466 36 1 -1.7375 -5.4448 2.0952 37 1 -0.7714 -7.6917 2.5026 38 1 0.3167 -6.7006 1.5019 39 1 0.6692 -6.9404 3.2300 40 1 -2.1477 -4.8438 4.4657 41 1 -2.2101 -6.6078 4.2339 42 1 -0.7699 -5.8561 4.9608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:00 Heat of formation + Delta-G solvation = 15.377122 kcal Electronic energy + Delta-G solvation = -20944.060443 eV Core-core repulsion = 18049.812907 eV Total energy + Delta-G solvation = -2894.247537 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.63771 -38.98273 -36.75862 -34.62421 -33.04514 -30.64847 -29.66000 -28.11407 -27.95762 -25.90937 -24.83140 -24.27832 -21.88047 -20.65431 -19.49240 -18.82404 -18.54061 -16.93811 -16.40119 -16.31895 -16.09352 -15.39080 -15.21525 -15.09606 -14.43557 -14.25217 -14.16598 -13.98710 -13.69129 -13.36856 -13.28881 -13.14892 -13.02683 -12.94276 -12.53320 -12.46476 -12.44141 -12.17572 -11.86279 -11.70168 -11.54464 -11.40191 -11.27528 -11.22933 -10.58262 -10.39208 -9.67179 -9.32804 -8.98514 -8.13097 -6.10914 0.03548 0.79501 1.16535 1.33239 1.37591 1.44876 2.05622 2.40687 3.21981 3.36716 3.56604 3.99415 4.09271 4.12376 4.20381 4.30570 4.41922 4.43267 4.61249 4.67998 4.74631 4.77384 4.85244 4.89655 4.91470 5.00689 5.06476 5.08289 5.16490 5.21935 5.22525 5.30730 5.34482 5.38773 5.54408 5.62120 5.62837 5.75637 6.16578 6.37984 6.67172 6.95604 7.00142 7.50444 8.97280 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014908 B = 0.006777 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.716884 B = 4130.489204 C = 5298.456172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.041 3.959 3 N -0.497 5.497 4 C -0.020 4.020 5 S 0.150 5.850 6 C -0.186 4.186 7 C 0.145 3.855 8 N -0.537 5.537 9 C 0.207 3.793 10 C -0.480 4.480 11 H 0.053 0.947 12 C 0.026 3.974 13 N -0.930 5.930 14 Si 0.915 3.085 15 H -0.286 1.286 16 H -0.281 1.281 17 H -0.256 1.256 18 C 0.059 3.941 19 C -0.104 4.104 20 C -0.088 4.088 21 C -0.147 4.147 22 C -0.144 4.144 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.065 0.935 26 H 0.210 0.790 27 H 0.110 0.890 28 H 0.026 0.974 29 H 0.010 0.990 30 H -0.035 1.035 31 H 0.259 0.741 32 H 0.091 0.909 33 H 0.022 0.978 34 H 0.035 0.965 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.036 0.964 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.876 -1.949 -7.163 12.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.093 4.093 3 N -0.213 5.213 4 C -0.316 4.316 5 S 0.406 5.594 6 C -0.308 4.308 7 C 0.015 3.985 8 N -0.262 5.262 9 C 0.081 3.919 10 C -0.520 4.520 11 H 0.072 0.928 12 C -0.173 4.173 13 N -0.572 5.572 14 Si 0.741 3.259 15 H -0.212 1.212 16 H -0.206 1.206 17 H -0.180 1.180 18 C -0.069 4.069 19 C -0.142 4.142 20 C -0.107 4.107 21 C -0.204 4.204 22 C -0.201 4.201 23 H 0.104 0.896 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.226 0.774 27 H 0.128 0.872 28 H 0.044 0.956 29 H 0.028 0.972 30 H -0.018 1.018 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.040 0.960 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.184 -1.583 -6.885 11.587 hybrid contribution 0.883 0.209 0.550 1.061 sum -8.301 -1.374 -6.335 10.532 Atomic orbital electron populations 1.20274 0.85781 1.03220 1.03003 1.20425 0.99140 0.85929 1.03768 1.66147 1.05537 1.32390 1.17176 1.28435 0.95663 1.01129 1.06380 1.84132 1.09045 1.02493 1.63705 1.25458 0.94240 1.00659 1.10491 1.20290 0.99098 0.88452 0.90676 1.62068 1.18221 1.35053 1.10842 1.19492 0.85215 0.95459 0.91771 1.21303 1.03522 0.93184 1.33965 0.92844 1.25351 0.97601 0.97972 0.96328 1.70029 1.16877 1.27396 1.42848 0.86180 0.78051 0.82594 0.79028 1.21220 1.20611 1.18026 1.22190 0.96174 0.90443 0.98064 1.21583 0.98483 0.98036 0.96063 1.21065 0.97437 0.93858 0.98355 1.21877 0.99741 0.97796 1.00982 1.21809 1.00297 1.02096 0.95917 0.89584 0.90107 0.91631 0.77391 0.87225 0.95597 0.97163 1.01763 0.93142 0.89119 0.95954 0.94661 0.92139 0.89666 0.91214 0.92921 0.94451 0.92500 0.91232 0.94083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.86 9.86 71.24 0.70 -1.15 16 2 C 0.04 1.51 6.64 41.52 0.28 1.79 16 3 N -0.50 -19.30 10.53 -191.56 -2.02 -21.31 16 4 C -0.02 -0.75 12.23 130.66 1.60 0.85 16 5 S 0.15 5.94 20.64 -56.49 -1.17 4.78 16 6 C -0.19 -7.16 3.97 24.64 0.10 -7.07 16 7 C 0.14 5.14 4.77 85.56 0.41 5.54 16 8 N -0.54 -21.22 4.45 -905.35 -4.03 -25.25 16 9 C 0.21 10.31 4.61 85.56 0.39 10.71 16 10 C -0.48 -25.63 5.99 25.60 0.15 -25.48 16 11 H 0.05 2.94 6.14 -2.91 -0.02 2.92 16 12 C 0.03 1.41 5.46 84.65 0.46 1.88 16 13 N -0.93 -54.37 13.29 21.44 0.28 -54.09 16 14 Si 0.92 43.85 29.54 68.60 2.03 45.87 16 15 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 17 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 18 C 0.06 1.86 4.70 86.30 0.41 2.27 16 19 C -0.10 -3.25 4.66 30.59 0.14 -3.11 16 20 C -0.09 -2.09 2.92 -10.79 -0.03 -2.12 16 21 C -0.15 -3.45 8.95 71.98 0.64 -2.81 16 22 C -0.14 -3.14 9.19 71.98 0.66 -2.48 16 23 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.08 2.33 7.51 -2.39 -0.02 2.31 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.21 6.17 8.06 -2.91 -0.02 6.15 16 27 H 0.11 3.09 7.43 -2.39 -0.02 3.07 16 28 H 0.03 0.97 7.79 -2.39 -0.02 0.95 16 29 H 0.01 0.56 5.85 -2.38 -0.01 0.55 16 30 H -0.04 -1.95 7.74 -2.39 -0.02 -1.97 16 31 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.09 2.31 7.86 -2.38 -0.02 2.29 16 33 H 0.02 0.73 6.54 -2.39 -0.02 0.71 16 34 H 0.03 1.35 6.24 -2.39 -0.01 1.34 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 1.26 6.56 -2.39 -0.02 1.24 16 39 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.04 0.99 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -63.21 343.03 1.99 -61.22 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.98 Total: 9.97 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 5.91 Total: -21.18 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -5.76 Total: -100.66 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 5.94 SS G_CDS: -1.17 Total: 4.78 kcal Total: -63.21 1.99 -61.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.592 kcal (2) G-P(sol) polarization free energy of solvation -63.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds