Wall clock time and date at job start Tue Mar 31 2020 06:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31777 * 122.75294 * 2 1 4 4 C 1.29028 * 117.12755 * 179.73067 * 3 2 1 5 5 S 1.70976 * 110.16559 * 359.97438 * 4 3 2 6 6 C 1.33647 * 122.74825 * 179.70600 * 2 1 3 7 7 C 1.50704 * 126.03507 * 0.24803 * 6 2 1 8 8 N 1.46904 * 109.46647 * 83.91142 * 7 6 2 9 9 C 1.46907 * 110.99422 * 189.31941 * 8 7 6 10 10 C 1.50697 * 109.46722 * 170.04708 * 9 8 7 11 11 H 1.07996 * 120.00573 * 2.21963 * 10 9 8 12 12 C 1.37878 * 119.99930 * 182.21961 * 10 9 8 13 13 N 1.31513 * 120.00204 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99889 * 359.97438 * 12 10 9 15 15 H 1.48509 * 109.46730 * 90.00218 * 14 12 10 16 16 H 1.48495 * 109.47322 * 209.99920 * 14 12 10 17 17 H 1.48497 * 109.47256 * 330.00435 * 14 12 10 18 18 C 1.46896 * 111.00307 * 65.36656 * 8 7 6 19 19 C 1.52998 * 109.47509 * 80.46441 * 18 8 7 20 20 C 1.53002 * 109.46965 * 77.71447 * 19 18 8 21 21 C 1.52998 * 109.47270 * 197.71415 * 19 18 8 22 22 C 1.52997 * 109.46882 * 317.71854 * 19 18 8 23 23 H 1.08999 * 109.47267 * 90.02580 * 1 2 3 24 24 H 1.08993 * 109.47378 * 210.02679 * 1 2 3 25 25 H 1.09004 * 109.46829 * 330.02549 * 1 2 3 26 26 H 1.07996 * 124.91864 * 180.02562 * 4 3 2 27 27 H 1.08993 * 109.46843 * 203.90571 * 7 6 2 28 28 H 1.08997 * 109.47291 * 323.91206 * 7 6 2 29 29 H 1.08998 * 109.47096 * 290.04290 * 9 8 7 30 30 H 1.08999 * 109.47266 * 50.04718 * 9 8 7 31 31 H 0.97001 * 119.99893 * 179.97438 * 13 12 10 32 32 H 1.08998 * 109.47175 * 200.46856 * 18 8 7 33 33 H 1.09004 * 109.47119 * 320.46166 * 18 8 7 34 34 H 1.08997 * 109.46903 * 22.27348 * 20 19 18 35 35 H 1.08995 * 109.47128 * 142.27425 * 20 19 18 36 36 H 1.09002 * 109.47093 * 262.27520 * 20 19 18 37 37 H 1.09004 * 109.46479 * 60.00048 * 21 19 18 38 38 H 1.08996 * 109.46810 * 179.97438 * 21 19 18 39 39 H 1.08993 * 109.47603 * 300.00285 * 21 19 18 40 40 H 1.09003 * 109.47723 * 63.56028 * 22 19 18 41 41 H 1.09005 * 109.47258 * 183.56207 * 22 19 18 42 42 H 1.09003 * 109.47034 * 303.56192 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9818 0.0054 5 16 3.9332 -0.6732 0.0120 6 6 2.2300 -1.1240 0.0058 7 6 1.6846 -2.5289 0.0077 8 7 1.3755 -2.9360 -1.3696 9 6 0.6399 -4.2075 -1.3901 10 6 0.1295 -4.4700 -2.7835 11 1 0.3617 -3.7814 -3.5823 12 6 -0.6339 -5.5895 -3.0385 13 7 -1.0797 -5.8184 -4.2544 14 14 -1.0349 -6.7811 -1.6569 15 1 -2.3028 -6.3706 -1.0016 16 1 -1.1853 -8.1501 -2.2120 17 1 0.0645 -6.7697 -0.6587 18 6 2.5976 -3.0216 -2.1801 19 6 3.3018 -4.3512 -1.9023 20 6 2.5829 -5.4753 -2.6510 21 6 4.7536 -4.2685 -2.3780 22 6 3.2730 -4.6393 -0.4000 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3633 0.8903 0.5135 26 1 4.2060 1.8025 0.0065 27 1 2.4274 -3.2064 0.4287 28 1 0.7767 -2.5654 0.6098 29 1 1.3048 -5.0167 -1.0882 30 1 -0.2015 -4.1517 -0.6994 31 1 -1.6165 -6.6062 -4.4338 32 1 2.3375 -2.9621 -3.2369 33 1 3.2628 -2.1974 -1.9227 34 1 2.0208 -5.0548 -3.4849 35 1 3.3167 -6.1869 -3.0295 36 1 1.8992 -5.9848 -1.9721 37 1 5.2656 -3.4677 -1.8445 38 1 5.2553 -5.2156 -2.1797 39 1 4.7741 -4.0632 -3.4483 40 1 2.2403 -4.7609 -0.0730 41 1 3.8292 -5.5540 -0.1946 42 1 3.7289 -3.8083 0.1382 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093101267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:33 Heat of formation + Delta-G solvation = 91.196919 kcal Electronic energy + Delta-G solvation = -21675.424335 eV Core-core repulsion = 18784.464592 eV Total energy + Delta-G solvation = -2890.959743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.00652 -39.15464 -34.07948 -32.91479 -31.58974 -29.39612 -28.07019 -27.20983 -26.14542 -25.33420 -24.41152 -22.93393 -20.41235 -18.79593 -18.14303 -17.89717 -16.92938 -15.59854 -15.36448 -14.94119 -14.53749 -14.14369 -14.09387 -13.42280 -13.35579 -13.17918 -12.70139 -12.46654 -12.25990 -12.12062 -11.72117 -11.60778 -11.34667 -11.29183 -11.09199 -11.03676 -10.82774 -10.64234 -10.46589 -10.09857 -9.94629 -9.80564 -9.64713 -9.49413 -9.22931 -9.00140 -8.49153 -8.47512 -7.11850 -6.05513 -3.95538 0.90174 1.53299 1.91394 2.99796 3.24609 3.31632 3.34338 4.38858 4.39481 4.86557 5.18938 5.23016 5.29356 5.30246 5.35056 5.40726 5.49709 5.77597 5.82553 5.88045 5.96669 6.04628 6.06415 6.08879 6.15809 6.19843 6.24213 6.40204 6.44957 6.57064 6.58690 6.68614 6.80586 6.90676 6.95667 7.20396 7.58599 7.66705 7.87516 7.91199 8.02333 8.65449 9.01683 9.55492 11.07563 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020097 B = 0.006461 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.932305 B = 4332.875639 C = 5104.997642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.065 3.935 3 N -0.467 5.467 4 C 0.006 3.994 5 S 0.096 5.904 6 C -0.184 4.184 7 C 0.086 3.914 8 N -0.512 5.512 9 C 0.128 3.872 10 C -0.489 4.489 11 H 0.080 0.920 12 C 0.069 3.931 13 N -0.900 5.900 14 Si 0.864 3.136 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.267 1.267 18 C 0.074 3.926 19 C -0.095 4.095 20 C -0.145 4.145 21 C -0.134 4.134 22 C -0.165 4.165 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.193 0.807 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.035 0.965 30 H 0.017 0.983 31 H 0.262 0.738 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.020 0.980 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.529 7.025 9.472 15.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 N -0.181 5.181 4 C -0.293 4.293 5 S 0.349 5.651 6 C -0.305 4.305 7 C -0.044 4.044 8 N -0.235 5.235 9 C 0.003 3.997 10 C -0.527 4.527 11 H 0.098 0.902 12 C -0.132 4.132 13 N -0.539 5.539 14 Si 0.692 3.308 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.192 1.192 18 C -0.055 4.055 19 C -0.097 4.097 20 C -0.201 4.201 21 C -0.192 4.192 22 C -0.221 4.221 23 H 0.100 0.900 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.210 0.790 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.039 0.961 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.838 7.297 9.167 15.961 hybrid contribution -0.538 -1.175 0.962 1.611 sum 10.300 6.122 10.128 15.690 Atomic orbital electron populations 1.20288 0.86858 1.02275 1.03538 1.20213 0.98347 0.85924 1.02131 1.66160 1.04983 1.31976 1.14969 1.28138 0.95300 0.99823 1.05998 1.83932 1.08695 1.03825 1.68657 1.25754 0.93604 1.01175 1.09991 1.21397 1.00608 0.88436 0.93930 1.62245 1.20295 1.33983 1.06974 1.21102 0.93210 0.86456 0.98944 1.20820 1.30737 1.07869 0.93276 0.90216 1.24791 0.95862 0.97558 0.94957 1.69870 1.36457 1.28032 1.19543 0.87059 0.79281 0.81234 0.83248 1.20358 1.21327 1.19242 1.22281 0.89821 0.93950 0.99427 1.21144 0.95251 0.98595 0.94701 1.22628 0.98380 0.96326 1.02758 1.21852 0.95789 1.00566 1.00967 1.22736 1.02735 1.00021 0.96630 0.90036 0.90731 0.91687 0.79022 0.90751 0.89712 0.94796 0.96542 0.92750 0.90296 0.92935 0.88080 0.96062 0.91682 0.93616 0.93358 0.92725 0.90234 0.93412 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.06 36.01 0.36 -0.65 16 2 C 0.07 1.02 6.74 -84.22 -0.57 0.46 16 3 N -0.47 -7.16 10.53 -11.90 -0.13 -7.28 16 4 C 0.01 0.07 12.23 51.58 0.63 0.70 16 5 S 0.10 1.22 21.79 -107.50 -2.34 -1.13 16 6 C -0.18 -2.82 5.19 -35.92 -0.19 -3.00 16 7 C 0.09 1.39 4.51 -4.97 -0.02 1.37 16 8 N -0.51 -9.84 4.70 -237.52 -1.12 -10.96 16 9 C 0.13 2.79 2.74 -4.97 -0.01 2.78 16 10 C -0.49 -12.61 5.80 -34.44 -0.20 -12.80 16 11 H 0.08 2.30 7.25 -52.49 -0.38 1.92 16 12 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 13 N -0.90 -26.25 13.96 55.43 0.77 -25.47 16 14 Si 0.86 20.43 26.54 -169.99 -4.51 15.92 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 17 H -0.27 -5.97 6.59 56.52 0.37 -5.60 16 18 C 0.07 1.34 4.58 -3.83 -0.02 1.32 16 19 C -0.10 -1.61 0.77 -154.51 -0.12 -1.72 16 20 C -0.14 -2.86 7.23 37.16 0.27 -2.59 16 21 C -0.13 -1.93 8.17 37.16 0.30 -1.62 16 22 C -0.17 -2.58 6.33 37.16 0.24 -2.35 16 23 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 24 H 0.07 1.03 6.82 -51.93 -0.35 0.68 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.08 1.14 3.22 -51.93 -0.17 0.97 16 28 H 0.08 1.34 6.77 -51.93 -0.35 0.99 16 29 H 0.04 0.74 1.38 -51.93 -0.07 0.67 16 30 H 0.02 0.37 7.25 -51.93 -0.38 0.00 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.08 1.62 6.88 -51.93 -0.36 1.26 16 33 H 0.05 0.88 5.40 -51.93 -0.28 0.60 16 34 H 0.10 2.32 5.09 -51.93 -0.26 2.06 16 35 H 0.02 0.38 7.72 -51.93 -0.40 -0.02 16 36 H 0.06 1.39 4.22 -51.93 -0.22 1.17 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.36 3.82 -51.93 -0.20 1.17 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.72 6.52 -51.93 -0.34 0.38 16 LS Contribution 315.52 15.07 4.75 4.75 Total: -1.00 -28.55 315.52 -7.87 -36.42 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.88 Total: 4.08 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 0.58 Total: -16.34 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.47 Total: -43.72 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.51 Total: 15.92 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.34 Total: -1.13 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.55 -7.87 -36.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.621 kcal (2) G-P(sol) polarization free energy of solvation -28.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds