Wall clock time and date at job start Tue Mar 31 2020 06:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31777 * 122.75294 * 2 1 4 4 C 1.29028 * 117.12755 * 179.73067 * 3 2 1 5 5 S 1.70976 * 110.16559 * 359.97438 * 4 3 2 6 6 C 1.33647 * 122.74825 * 179.70600 * 2 1 3 7 7 C 1.50704 * 126.03507 * 0.24803 * 6 2 1 8 8 N 1.46904 * 109.46647 * 83.91142 * 7 6 2 9 9 C 1.46907 * 110.99422 * 189.31941 * 8 7 6 10 10 C 1.50697 * 109.46722 * 170.04708 * 9 8 7 11 11 H 1.07996 * 120.00573 * 2.21963 * 10 9 8 12 12 C 1.37878 * 119.99930 * 182.21961 * 10 9 8 13 13 N 1.31513 * 120.00204 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99889 * 359.97438 * 12 10 9 15 15 H 1.48509 * 109.46730 * 90.00218 * 14 12 10 16 16 H 1.48495 * 109.47322 * 209.99920 * 14 12 10 17 17 H 1.48497 * 109.47256 * 330.00435 * 14 12 10 18 18 C 1.46896 * 111.00307 * 65.36656 * 8 7 6 19 19 C 1.52998 * 109.47509 * 80.46441 * 18 8 7 20 20 C 1.53002 * 109.46965 * 77.71447 * 19 18 8 21 21 C 1.52998 * 109.47270 * 197.71415 * 19 18 8 22 22 C 1.52997 * 109.46882 * 317.71854 * 19 18 8 23 23 H 1.08999 * 109.47267 * 90.02580 * 1 2 3 24 24 H 1.08993 * 109.47378 * 210.02679 * 1 2 3 25 25 H 1.09004 * 109.46829 * 330.02549 * 1 2 3 26 26 H 1.07996 * 124.91864 * 180.02562 * 4 3 2 27 27 H 1.08993 * 109.46843 * 203.90571 * 7 6 2 28 28 H 1.08997 * 109.47291 * 323.91206 * 7 6 2 29 29 H 1.08998 * 109.47096 * 290.04290 * 9 8 7 30 30 H 1.08999 * 109.47266 * 50.04718 * 9 8 7 31 31 H 0.97001 * 119.99893 * 179.97438 * 13 12 10 32 32 H 1.08998 * 109.47175 * 200.46856 * 18 8 7 33 33 H 1.09004 * 109.47119 * 320.46166 * 18 8 7 34 34 H 1.08997 * 109.46903 * 22.27348 * 20 19 18 35 35 H 1.08995 * 109.47128 * 142.27425 * 20 19 18 36 36 H 1.09002 * 109.47093 * 262.27520 * 20 19 18 37 37 H 1.09004 * 109.46479 * 60.00048 * 21 19 18 38 38 H 1.08996 * 109.46810 * 179.97438 * 21 19 18 39 39 H 1.08993 * 109.47603 * 300.00285 * 21 19 18 40 40 H 1.09003 * 109.47723 * 63.56028 * 22 19 18 41 41 H 1.09005 * 109.47258 * 183.56207 * 22 19 18 42 42 H 1.09003 * 109.47034 * 303.56192 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9818 0.0054 5 16 3.9332 -0.6732 0.0120 6 6 2.2300 -1.1240 0.0058 7 6 1.6846 -2.5289 0.0077 8 7 1.3755 -2.9360 -1.3696 9 6 0.6399 -4.2075 -1.3901 10 6 0.1295 -4.4700 -2.7835 11 1 0.3617 -3.7814 -3.5823 12 6 -0.6339 -5.5895 -3.0385 13 7 -1.0797 -5.8184 -4.2544 14 14 -1.0349 -6.7811 -1.6569 15 1 -2.3028 -6.3706 -1.0016 16 1 -1.1853 -8.1501 -2.2120 17 1 0.0645 -6.7697 -0.6587 18 6 2.5976 -3.0216 -2.1801 19 6 3.3018 -4.3512 -1.9023 20 6 2.5829 -5.4753 -2.6510 21 6 4.7536 -4.2685 -2.3780 22 6 3.2730 -4.6393 -0.4000 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3633 0.8903 0.5135 26 1 4.2060 1.8025 0.0065 27 1 2.4274 -3.2064 0.4287 28 1 0.7767 -2.5654 0.6098 29 1 1.3048 -5.0167 -1.0882 30 1 -0.2015 -4.1517 -0.6994 31 1 -1.6165 -6.6062 -4.4338 32 1 2.3375 -2.9621 -3.2369 33 1 3.2628 -2.1974 -1.9227 34 1 2.0208 -5.0548 -3.4849 35 1 3.3167 -6.1869 -3.0295 36 1 1.8992 -5.9848 -1.9721 37 1 5.2656 -3.4677 -1.8445 38 1 5.2553 -5.2156 -2.1797 39 1 4.7741 -4.0632 -3.4483 40 1 2.2403 -4.7609 -0.0730 41 1 3.8292 -5.5540 -0.1946 42 1 3.7289 -3.8083 0.1382 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093101267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:32 Heat of formation + Delta-G solvation = 72.288909 kcal Electronic energy + Delta-G solvation = -21676.244248 eV Core-core repulsion = 18784.464592 eV Total energy + Delta-G solvation = -2891.779656 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.31827 -40.41271 -35.42283 -34.85229 -32.93967 -30.95289 -29.49328 -28.53338 -27.52422 -26.72231 -25.69676 -24.41840 -22.03173 -20.09156 -19.40606 -19.11580 -18.75642 -16.96775 -16.76221 -16.35250 -16.09282 -15.64184 -15.42656 -14.75923 -14.73124 -14.44463 -14.27317 -13.88919 -13.42383 -13.35711 -13.19295 -13.08461 -12.89278 -12.57935 -12.50732 -12.43293 -12.31113 -12.28211 -11.91059 -11.74870 -11.55653 -11.41389 -11.19345 -11.06656 -10.56419 -10.56074 -10.11284 -9.57165 -8.61943 -8.16335 -6.08783 -0.16414 0.49817 0.85189 1.36177 1.37956 1.45653 1.88114 2.40072 3.17766 3.39918 3.43191 3.96154 3.98752 4.00861 4.13466 4.21266 4.34918 4.50964 4.59711 4.68199 4.70993 4.74238 4.83390 4.88306 4.91657 4.93841 4.99064 5.02242 5.09994 5.12725 5.17921 5.31617 5.33964 5.42720 5.47951 5.61172 5.69752 5.95490 6.11225 6.45638 6.75749 6.83750 6.87715 7.45267 9.00593 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020097 B = 0.006461 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.932305 B = 4332.875639 C = 5104.997642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.054 3.946 3 N -0.498 5.498 4 C 0.016 3.984 5 S 0.142 5.858 6 C -0.214 4.214 7 C 0.092 3.908 8 N -0.530 5.530 9 C 0.137 3.863 10 C -0.472 4.472 11 H 0.033 0.967 12 C 0.014 3.986 13 N -0.952 5.952 14 Si 0.922 3.078 15 H -0.275 1.275 16 H -0.290 1.290 17 H -0.241 1.241 18 C 0.080 3.920 19 C -0.093 4.093 20 C -0.137 4.137 21 C -0.130 4.130 22 C -0.161 4.161 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.231 0.769 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.014 0.986 31 H 0.261 0.739 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.034 0.966 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.082 7.359 12.182 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.078 4.078 3 N -0.213 5.213 4 C -0.281 4.281 5 S 0.395 5.605 6 C -0.335 4.335 7 C -0.037 4.037 8 N -0.253 5.253 9 C 0.011 3.989 10 C -0.510 4.510 11 H 0.051 0.949 12 C -0.182 4.182 13 N -0.594 5.594 14 Si 0.747 3.253 15 H -0.200 1.200 16 H -0.217 1.217 17 H -0.165 1.165 18 C -0.048 4.048 19 C -0.095 4.095 20 C -0.194 4.194 21 C -0.187 4.187 22 C -0.217 4.217 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.247 0.753 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.418 7.646 11.900 19.497 hybrid contribution -1.239 -1.125 0.048 1.674 sum 12.179 6.521 11.949 18.265 Atomic orbital electron populations 1.20256 0.87012 1.03005 1.02563 1.20387 0.98800 0.86497 1.02104 1.66208 1.06227 1.31990 1.16861 1.28855 0.95038 1.01120 1.03135 1.83680 1.05830 1.03301 1.67657 1.25698 0.95775 1.00429 1.11615 1.21339 1.01291 0.89395 0.91702 1.62039 1.21225 1.32563 1.09489 1.20906 0.93678 0.88437 0.95859 1.20930 1.29545 1.06336 0.94224 0.94884 1.25526 0.96119 0.99531 0.97073 1.70036 1.38335 1.28995 1.22054 0.86101 0.79821 0.78547 0.80782 1.20048 1.21657 1.16457 1.22159 0.89818 0.95651 0.97219 1.21095 0.96424 0.96255 0.95696 1.22447 0.98284 0.97407 1.01283 1.21809 0.93884 1.02184 1.00868 1.22646 1.02199 1.01734 0.95127 0.91788 0.90497 0.90503 0.75301 0.89268 0.89742 0.93300 0.96782 0.93016 0.94073 0.91079 0.92230 0.94682 0.93227 0.91516 0.91947 0.93289 0.91795 0.91728 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.99 10.06 71.24 0.72 -1.27 16 2 C 0.05 1.62 6.74 41.52 0.28 1.90 16 3 N -0.50 -14.25 10.53 -191.55 -2.02 -16.27 16 4 C 0.02 0.35 12.23 130.65 1.60 1.95 16 5 S 0.14 3.07 21.79 -56.49 -1.23 1.84 16 6 C -0.21 -6.12 5.19 24.64 0.13 -5.99 16 7 C 0.09 2.81 4.51 85.56 0.39 3.20 16 8 N -0.53 -20.31 4.70 -905.37 -4.25 -24.57 16 9 C 0.14 5.98 2.74 85.55 0.23 6.22 16 10 C -0.47 -25.38 5.80 25.60 0.15 -25.23 16 11 H 0.03 2.05 7.25 -2.91 -0.02 2.03 16 12 C 0.01 0.76 5.29 84.66 0.45 1.21 16 13 N -0.95 -58.20 13.96 21.45 0.30 -57.90 16 14 Si 0.92 42.39 26.54 68.60 1.82 44.21 16 15 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 16 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 17 H -0.24 -9.95 6.59 99.48 0.66 -9.30 16 18 C 0.08 2.89 4.58 86.30 0.40 3.28 16 19 C -0.09 -2.98 0.77 -52.18 -0.04 -3.02 16 20 C -0.14 -5.44 7.23 71.98 0.52 -4.92 16 21 C -0.13 -3.35 8.17 71.98 0.59 -2.76 16 22 C -0.16 -4.48 6.33 71.98 0.46 -4.03 16 23 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.08 2.11 6.82 -2.39 -0.02 2.10 16 25 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.23 2.95 8.06 -2.91 -0.02 2.93 16 27 H 0.09 2.46 3.22 -2.39 -0.01 2.45 16 28 H 0.08 2.56 6.77 -2.39 -0.02 2.55 16 29 H 0.05 2.06 1.38 -2.39 0.00 2.06 16 30 H 0.01 0.63 7.25 -2.39 -0.02 0.61 16 31 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.04 1.77 6.88 -2.39 -0.02 1.76 16 33 H 0.07 2.26 5.40 -2.38 -0.01 2.24 16 34 H 0.06 2.86 5.09 -2.39 -0.01 2.85 16 35 H 0.03 1.24 7.72 -2.39 -0.02 1.22 16 36 H 0.05 2.08 4.22 -2.39 -0.01 2.07 16 37 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.06 1.45 8.12 -2.39 -0.02 1.44 16 39 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 2.00 3.82 -2.39 -0.01 1.99 16 41 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.07 1.70 6.52 -2.39 -0.02 1.68 16 Total: -1.00 -64.78 315.52 1.46 -63.32 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.98 Total: 18.84 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 5.86 Total: -29.48 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -5.97 Total: -98.73 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.82 Total: 44.21 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.23 Total: 1.84 kcal Total: -64.78 1.46 -63.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093101267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.611 kcal (2) G-P(sol) polarization free energy of solvation -64.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds