Wall clock time and date at job start Tue Mar 31 2020 07:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46894 * 111.00314 * 2 1 4 4 C 1.52997 * 109.47215 * 76.47918 * 3 2 1 5 5 C 1.50702 * 109.46853 * 179.97438 * 4 3 2 6 6 N 1.29033 * 124.91383 * 90.30691 * 5 4 3 7 7 C 1.31783 * 117.11951 * 180.22628 * 6 5 4 8 8 C 1.33637 * 114.50436 * 359.47557 * 7 6 5 9 9 S 1.70976 * 124.91626 * 269.99456 * 5 4 3 10 10 C 1.46902 * 110.99830 * 236.04252 * 2 1 3 11 11 C 1.52998 * 109.47429 * 210.71508 * 10 2 1 12 12 C 1.53004 * 109.47075 * 294.43386 * 11 10 2 13 13 C 1.53005 * 109.47102 * 54.42842 * 11 10 2 14 14 C 1.52998 * 109.47296 * 174.42872 * 11 10 2 15 15 C 1.50699 * 109.47115 * 179.97438 * 14 11 10 16 16 H 1.08004 * 120.00228 * 359.97438 * 15 14 11 17 17 C 1.37879 * 120.00331 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00284 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99723 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47105 * 89.99935 * 19 17 15 21 21 H 1.48495 * 109.47028 * 210.00283 * 19 17 15 22 22 H 1.48496 * 109.47132 * 330.00165 * 19 17 15 23 23 H 1.09005 * 109.47439 * 64.11622 * 1 2 3 24 24 H 1.08994 * 109.47934 * 184.11985 * 1 2 3 25 25 H 1.09002 * 109.47099 * 304.12581 * 1 2 3 26 26 H 1.09001 * 109.47075 * 316.47232 * 3 2 1 27 27 H 1.09002 * 109.46976 * 196.48034 * 3 2 1 28 28 H 1.08989 * 109.47295 * 59.99769 * 4 3 2 29 29 H 1.09001 * 109.46664 * 299.99459 * 4 3 2 30 30 H 1.07997 * 122.74700 * 179.75196 * 7 6 5 31 31 H 1.07994 * 126.04456 * 180.26764 * 8 7 6 32 32 H 1.09006 * 109.46850 * 330.71452 * 10 2 1 33 33 H 1.08999 * 109.47109 * 90.71308 * 10 2 1 34 34 H 1.08999 * 109.47034 * 70.58421 * 12 11 10 35 35 H 1.09005 * 109.46796 * 190.58742 * 12 11 10 36 36 H 1.08997 * 109.46678 * 310.58373 * 12 11 10 37 37 H 1.09003 * 109.46953 * 65.05177 * 13 11 10 38 38 H 1.08997 * 109.47316 * 185.05222 * 13 11 10 39 39 H 1.08999 * 109.47211 * 305.05896 * 13 11 10 40 40 H 1.08993 * 109.47459 * 299.99986 * 14 11 10 41 41 H 1.08998 * 109.46888 * 60.00499 * 14 11 10 42 42 H 0.96996 * 120.00211 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.8634 1.9684 1.4025 5 6 2.4041 3.3750 1.4025 6 7 1.7077 4.4340 1.1605 7 6 2.3396 5.5898 1.1970 8 6 3.6390 5.5020 1.4965 9 16 4.0276 3.7994 1.7307 10 6 1.9954 -0.7661 -1.1376 11 6 3.3359 -1.3950 -0.7524 12 6 4.3671 -0.2904 -0.5121 13 6 3.1643 -2.2191 0.5252 14 6 3.8169 -2.3042 -1.8850 15 6 5.1375 -2.9231 -1.5059 16 1 5.5890 -2.6908 -0.5526 17 6 5.7702 -3.7851 -2.3764 18 7 6.9230 -4.3248 -2.0457 19 14 4.9898 -4.1864 -4.0255 20 1 5.4561 -3.2114 -5.0440 21 1 5.3813 -5.5582 -4.4376 22 1 3.5118 -4.1083 -3.9057 23 1 -0.3634 0.4486 -0.9246 24 1 -0.3635 -1.0249 0.0738 25 1 -0.3633 0.5765 0.8507 26 1 1.4301 1.9776 -0.7078 27 1 3.0457 1.3573 -0.2915 28 1 2.4288 1.3621 2.1101 29 1 0.8132 1.9824 1.6939 30 1 1.8466 6.5314 1.0050 31 1 4.3290 6.3285 1.5802 32 1 1.2887 -1.5519 -1.4045 33 1 2.1375 -0.1007 -1.9891 34 1 4.1227 0.2409 0.4077 35 1 5.3594 -0.7329 -0.4236 36 1 4.3538 0.4073 -1.3494 37 1 2.4983 -3.0593 0.3289 38 1 4.1353 -2.5932 0.8495 39 1 2.7368 -1.5918 1.3075 40 1 3.0823 -3.0910 -2.0562 41 1 3.9392 -1.7171 -2.7952 42 1 7.3678 -4.9315 -2.6579 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093844157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:19 Heat of formation + Delta-G solvation = 40.825106 kcal Electronic energy + Delta-G solvation = -20355.778068 eV Core-core repulsion = 17462.634039 eV Total energy + Delta-G solvation = -2893.144029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.83041 -38.52317 -35.40844 -32.78394 -32.06386 -29.25580 -27.97508 -26.69638 -26.37499 -25.60723 -23.79197 -22.32789 -20.88515 -19.99332 -18.20493 -17.78425 -16.74531 -15.85054 -15.48266 -15.35335 -14.61027 -14.30830 -14.16660 -13.94020 -13.43627 -13.23305 -12.92442 -12.66224 -12.47852 -12.26115 -12.18278 -11.68897 -11.61230 -11.52885 -11.20704 -10.95137 -10.83075 -10.48101 -10.46119 -10.25898 -9.77852 -9.76012 -9.63038 -9.54248 -9.20955 -9.01462 -8.89737 -8.47390 -8.06192 -5.97815 -3.93560 0.55420 1.23126 1.63229 2.67157 3.33382 3.41284 3.44735 3.84357 4.30239 4.50233 4.93675 5.01225 5.03572 5.15246 5.30846 5.33325 5.36684 5.48815 5.56964 5.63604 5.75817 5.83966 5.93695 5.94511 6.01125 6.09606 6.18580 6.25556 6.48413 6.65421 6.71770 6.85759 7.12511 7.18918 7.21308 7.24300 7.36501 7.40474 7.53990 7.58595 7.88292 8.62627 9.08589 9.65601 11.15327 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.003944 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.803094 B = 7097.072016 C = 7726.646676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.533 5.533 3 C 0.046 3.954 4 C -0.040 4.040 5 C 0.059 3.941 6 N -0.480 5.480 7 C 0.037 3.963 8 C -0.270 4.270 9 S 0.134 5.866 10 C 0.062 3.938 11 C -0.043 4.043 12 C -0.134 4.134 13 C -0.115 4.115 14 C -0.005 4.005 15 C -0.505 4.505 16 H 0.078 0.922 17 C 0.065 3.935 18 N -0.906 5.906 19 Si 0.874 3.126 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.267 1.267 23 H 0.020 0.980 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.173 0.827 31 H 0.175 0.825 32 H 0.066 0.934 33 H 0.033 0.967 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.014 0.986 41 H 0.007 0.993 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.122 17.038 7.248 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.256 5.256 3 C -0.083 4.083 4 C -0.081 4.081 5 C -0.219 4.219 6 N -0.195 5.195 7 C -0.114 4.114 8 C -0.410 4.410 9 S 0.388 5.612 10 C -0.065 4.065 11 C -0.044 4.044 12 C -0.191 4.191 13 C -0.173 4.173 14 C -0.043 4.043 15 C -0.543 4.543 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.546 5.546 19 Si 0.702 3.298 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.192 1.192 23 H 0.039 0.961 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.190 0.810 31 H 0.193 0.807 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.025 0.975 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.500 16.070 7.753 20.214 hybrid contribution -0.994 1.105 -1.989 2.483 sum -10.494 17.175 5.764 20.936 Atomic orbital electron populations 1.22452 0.88133 1.01973 0.99931 1.61869 1.06874 1.12214 1.44648 1.22457 1.02563 0.88872 0.94408 1.20275 1.02497 0.85778 0.99580 1.27185 0.93724 0.99487 1.01547 1.66314 1.38031 0.97830 1.17338 1.21793 0.91075 0.96787 1.01789 1.27113 1.00891 1.00212 1.12734 1.84305 1.12700 1.00187 1.63974 1.22380 0.97995 0.96125 0.89990 1.20369 0.91484 0.95211 0.97316 1.21973 1.00977 0.97435 0.98721 1.21579 1.01121 0.98184 0.96386 1.19645 0.97146 0.94250 0.93290 1.21138 1.03046 1.25511 1.04603 0.90365 1.25010 0.94710 0.95851 0.97996 1.69905 1.16062 1.31821 1.36785 0.86865 0.80381 0.77524 0.84991 1.20547 1.21593 1.19157 0.96114 0.91378 0.91760 0.94632 0.88587 0.88622 0.89037 0.80998 0.80731 0.91544 0.94818 0.93848 0.90949 0.94610 0.94432 0.92526 0.93212 0.96792 0.97505 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.24 60.06 0.56 0.83 16 2 N -0.53 -7.29 3.43 -242.92 -0.83 -8.12 16 3 C 0.05 0.60 4.10 -3.83 -0.02 0.58 16 4 C -0.04 -0.45 5.91 -27.88 -0.16 -0.62 16 5 C 0.06 0.69 6.64 -13.45 -0.09 0.60 16 6 N -0.48 -6.01 10.54 -11.86 -0.13 -6.14 16 7 C 0.04 0.38 11.35 -19.18 -0.22 0.16 16 8 C -0.27 -2.47 11.37 29.12 0.33 -2.14 16 9 S 0.13 1.40 23.18 -107.50 -2.49 -1.10 16 10 C 0.06 1.01 4.23 -3.82 -0.02 0.99 16 11 C -0.04 -0.82 0.61 -154.51 -0.09 -0.91 16 12 C -0.13 -2.44 6.81 37.16 0.25 -2.18 16 13 C -0.12 -2.16 7.97 37.16 0.30 -1.87 16 14 C -0.01 -0.13 3.11 -27.88 -0.09 -0.21 16 15 C -0.51 -13.82 8.12 -34.44 -0.28 -14.09 16 16 H 0.08 2.28 5.99 -52.48 -0.31 1.97 16 17 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 18 N -0.91 -27.66 13.96 55.43 0.77 -26.89 16 19 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 23 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 24 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 25 H 0.06 0.66 6.80 -51.93 -0.35 0.31 16 26 H 0.04 0.47 7.99 -51.93 -0.41 0.06 16 27 H 0.10 1.33 4.28 -51.93 -0.22 1.11 16 28 H 0.10 1.05 8.14 -51.94 -0.42 0.62 16 29 H 0.09 1.00 6.90 -51.93 -0.36 0.64 16 30 H 0.17 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.07 1.06 7.72 -51.93 -0.40 0.66 16 33 H 0.03 0.55 7.79 -51.93 -0.40 0.14 16 34 H 0.04 0.69 6.39 -51.93 -0.33 0.35 16 35 H 0.07 1.51 6.34 -51.93 -0.33 1.18 16 36 H 0.03 0.62 7.54 -51.93 -0.39 0.23 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 1.18 6.80 -51.93 -0.35 0.82 16 39 H 0.05 0.83 7.29 -51.93 -0.38 0.45 16 40 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 41 H 0.01 0.16 7.57 -51.93 -0.39 -0.24 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 337.76 15.07 5.09 5.09 Total: -1.00 -30.44 337.76 -8.60 -39.04 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.72 Total: -1.82 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 0.37 Total: -17.11 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: -0.18 Total: -41.15 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.49 Total: -1.10 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.44 -8.60 -39.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093844157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.861 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds