Wall clock time and date at job start Tue Mar 31 2020 07:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46894 * 111.00314 * 2 1 4 4 C 1.52997 * 109.47215 * 76.47918 * 3 2 1 5 5 C 1.50702 * 109.46853 * 179.97438 * 4 3 2 6 6 N 1.29033 * 124.91383 * 90.30691 * 5 4 3 7 7 C 1.31783 * 117.11951 * 180.22628 * 6 5 4 8 8 C 1.33637 * 114.50436 * 359.47557 * 7 6 5 9 9 S 1.70976 * 124.91626 * 269.99456 * 5 4 3 10 10 C 1.46902 * 110.99830 * 236.04252 * 2 1 3 11 11 C 1.52998 * 109.47429 * 210.71508 * 10 2 1 12 12 C 1.53004 * 109.47075 * 294.43386 * 11 10 2 13 13 C 1.53005 * 109.47102 * 54.42842 * 11 10 2 14 14 C 1.52998 * 109.47296 * 174.42872 * 11 10 2 15 15 C 1.50699 * 109.47115 * 179.97438 * 14 11 10 16 16 H 1.08004 * 120.00228 * 359.97438 * 15 14 11 17 17 C 1.37879 * 120.00331 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00284 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99723 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47105 * 89.99935 * 19 17 15 21 21 H 1.48495 * 109.47028 * 210.00283 * 19 17 15 22 22 H 1.48496 * 109.47132 * 330.00165 * 19 17 15 23 23 H 1.09005 * 109.47439 * 64.11622 * 1 2 3 24 24 H 1.08994 * 109.47934 * 184.11985 * 1 2 3 25 25 H 1.09002 * 109.47099 * 304.12581 * 1 2 3 26 26 H 1.09001 * 109.47075 * 316.47232 * 3 2 1 27 27 H 1.09002 * 109.46976 * 196.48034 * 3 2 1 28 28 H 1.08989 * 109.47295 * 59.99769 * 4 3 2 29 29 H 1.09001 * 109.46664 * 299.99459 * 4 3 2 30 30 H 1.07997 * 122.74700 * 179.75196 * 7 6 5 31 31 H 1.07994 * 126.04456 * 180.26764 * 8 7 6 32 32 H 1.09006 * 109.46850 * 330.71452 * 10 2 1 33 33 H 1.08999 * 109.47109 * 90.71308 * 10 2 1 34 34 H 1.08999 * 109.47034 * 70.58421 * 12 11 10 35 35 H 1.09005 * 109.46796 * 190.58742 * 12 11 10 36 36 H 1.08997 * 109.46678 * 310.58373 * 12 11 10 37 37 H 1.09003 * 109.46953 * 65.05177 * 13 11 10 38 38 H 1.08997 * 109.47316 * 185.05222 * 13 11 10 39 39 H 1.08999 * 109.47211 * 305.05896 * 13 11 10 40 40 H 1.08993 * 109.47459 * 299.99986 * 14 11 10 41 41 H 1.08998 * 109.46888 * 60.00499 * 14 11 10 42 42 H 0.96996 * 120.00211 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.8634 1.9684 1.4025 5 6 2.4041 3.3750 1.4025 6 7 1.7077 4.4340 1.1605 7 6 2.3396 5.5898 1.1970 8 6 3.6390 5.5020 1.4965 9 16 4.0276 3.7994 1.7307 10 6 1.9954 -0.7661 -1.1376 11 6 3.3359 -1.3950 -0.7524 12 6 4.3671 -0.2904 -0.5121 13 6 3.1643 -2.2191 0.5252 14 6 3.8169 -2.3042 -1.8850 15 6 5.1375 -2.9231 -1.5059 16 1 5.5890 -2.6908 -0.5526 17 6 5.7702 -3.7851 -2.3764 18 7 6.9230 -4.3248 -2.0457 19 14 4.9898 -4.1864 -4.0255 20 1 5.4561 -3.2114 -5.0440 21 1 5.3813 -5.5582 -4.4376 22 1 3.5118 -4.1083 -3.9057 23 1 -0.3634 0.4486 -0.9246 24 1 -0.3635 -1.0249 0.0738 25 1 -0.3633 0.5765 0.8507 26 1 1.4301 1.9776 -0.7078 27 1 3.0457 1.3573 -0.2915 28 1 2.4288 1.3621 2.1101 29 1 0.8132 1.9824 1.6939 30 1 1.8466 6.5314 1.0050 31 1 4.3290 6.3285 1.5802 32 1 1.2887 -1.5519 -1.4045 33 1 2.1375 -0.1007 -1.9891 34 1 4.1227 0.2409 0.4077 35 1 5.3594 -0.7329 -0.4236 36 1 4.3538 0.4073 -1.3494 37 1 2.4983 -3.0593 0.3289 38 1 4.1353 -2.5932 0.8495 39 1 2.7368 -1.5918 1.3075 40 1 3.0823 -3.0910 -2.0562 41 1 3.9392 -1.7171 -2.7952 42 1 7.3678 -4.9315 -2.6579 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093844157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:18 Heat of formation + Delta-G solvation = 22.599056 kcal Electronic energy + Delta-G solvation = -20356.568409 eV Core-core repulsion = 17462.634039 eV Total energy + Delta-G solvation = -2893.934370 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.65953 -39.78091 -36.82467 -34.37692 -33.49934 -30.11622 -29.83097 -28.08818 -27.65711 -26.69375 -25.03422 -23.83325 -22.03494 -20.80197 -19.51850 -18.86900 -18.80908 -16.82234 -16.57435 -16.32115 -16.20840 -15.54112 -15.27921 -15.20819 -14.74208 -14.60265 -14.31371 -14.06949 -13.71416 -13.64668 -13.38510 -13.06031 -12.79684 -12.64707 -12.43233 -12.37046 -12.32976 -12.18125 -12.03209 -11.70920 -11.64425 -11.26180 -10.88454 -10.75783 -10.66811 -10.60341 -10.33575 -9.81535 -9.16989 -8.18891 -6.18513 -0.23097 0.45603 0.85836 1.36874 1.38912 1.49700 1.87936 2.41593 2.89064 3.16308 3.40584 4.02781 4.05590 4.13380 4.23454 4.32641 4.40488 4.42342 4.52999 4.57513 4.66539 4.69199 4.78910 4.87160 4.89301 4.95631 5.02828 5.05819 5.14757 5.17764 5.25024 5.30560 5.43893 5.50488 5.61052 5.67742 5.80849 5.87348 6.15517 6.22914 6.46376 6.79181 6.88897 7.43711 8.97336 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.003944 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.803094 B = 7097.072016 C = 7726.646676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.536 5.536 3 C 0.052 3.948 4 C -0.033 4.033 5 C 0.042 3.958 6 N -0.502 5.502 7 C 0.019 3.981 8 C -0.257 4.257 9 S 0.128 5.872 10 C 0.072 3.928 11 C -0.044 4.044 12 C -0.124 4.124 13 C -0.106 4.106 14 C -0.004 4.004 15 C -0.500 4.500 16 H 0.045 0.955 17 C 0.002 3.998 18 N -0.955 5.955 19 Si 0.938 3.062 20 H -0.272 1.272 21 H -0.289 1.289 22 H -0.249 1.249 23 H 0.023 0.977 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.032 0.968 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.196 0.804 31 H 0.204 0.796 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.036 0.964 36 H 0.042 0.958 37 H 0.034 0.966 38 H 0.024 0.976 39 H 0.072 0.928 40 H 0.013 0.987 41 H 0.008 0.992 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.079 18.695 6.942 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.260 5.260 3 C -0.077 4.077 4 C -0.074 4.074 5 C -0.236 4.236 6 N -0.218 5.218 7 C -0.131 4.131 8 C -0.396 4.396 9 S 0.381 5.619 10 C -0.056 4.056 11 C -0.044 4.044 12 C -0.181 4.181 13 C -0.163 4.163 14 C -0.042 4.042 15 C -0.538 4.538 16 H 0.064 0.936 17 C -0.194 4.194 18 N -0.597 5.597 19 Si 0.763 3.237 20 H -0.198 1.198 21 H -0.215 1.215 22 H -0.173 1.173 23 H 0.042 0.958 24 H 0.091 0.909 25 H 0.098 0.902 26 H 0.050 0.950 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.213 0.787 31 H 0.221 0.779 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.032 0.968 41 H 0.027 0.973 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.484 17.747 7.455 22.415 hybrid contribution -0.342 0.680 -1.795 1.950 sum -11.826 18.427 5.660 22.615 Atomic orbital electron populations 1.22503 0.86417 1.02662 1.00794 1.61796 1.08370 1.12488 1.43295 1.22370 1.01614 0.88363 0.95348 1.20178 1.02930 0.85752 0.98517 1.27205 0.94300 0.99536 1.02543 1.66317 1.39042 0.98657 1.17748 1.22210 0.91672 0.97050 1.02183 1.27469 1.01013 1.00075 1.11004 1.84329 1.12108 1.01586 1.63876 1.22127 0.96179 0.96487 0.90780 1.20312 0.93478 0.94853 0.95783 1.21868 0.98743 0.97270 1.00253 1.21478 0.99391 0.98427 0.97006 1.19612 0.94836 0.94807 0.94925 1.21428 1.04462 1.24816 1.03127 0.93639 1.25893 0.95258 0.96130 1.02118 1.70060 1.17953 1.33239 1.38438 0.85835 0.80354 0.77254 0.80241 1.19755 1.21542 1.17260 0.95810 0.90925 0.90205 0.94999 0.89784 0.88334 0.88497 0.78700 0.77893 0.91108 0.94746 0.91505 0.94539 0.93926 0.94633 0.95637 0.90898 0.96828 0.97326 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.24 127.69 1.18 1.67 16 2 N -0.54 -13.39 3.43 -922.47 -3.16 -16.55 16 3 C 0.05 1.25 4.10 86.30 0.35 1.60 16 4 C -0.03 -0.68 5.91 29.85 0.18 -0.50 16 5 C 0.04 0.92 6.64 88.52 0.59 1.51 16 6 N -0.50 -11.72 10.54 -191.44 -2.02 -13.74 16 7 C 0.02 0.35 11.35 83.66 0.95 1.30 16 8 C -0.26 -4.07 11.37 66.78 0.76 -3.31 16 9 S 0.13 2.46 23.18 -56.49 -1.31 1.15 16 10 C 0.07 2.17 4.23 86.30 0.37 2.54 16 11 C -0.04 -1.62 0.61 -52.18 -0.03 -1.65 16 12 C -0.12 -4.49 6.81 71.98 0.49 -4.00 16 13 C -0.11 -3.91 7.97 71.98 0.57 -3.34 16 14 C 0.00 -0.18 3.11 29.85 0.09 -0.09 16 15 C -0.50 -28.00 8.12 25.60 0.21 -27.80 16 16 H 0.05 2.79 5.99 -2.91 -0.02 2.77 16 17 C 0.00 0.09 5.47 84.66 0.46 0.56 16 18 N -0.95 -60.03 13.96 21.45 0.30 -59.74 16 19 Si 0.94 44.72 27.47 68.60 1.88 46.60 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 23 H 0.02 0.47 8.14 -2.38 -0.02 0.45 16 24 H 0.07 1.42 8.06 -2.39 -0.02 1.40 16 25 H 0.08 1.39 6.80 -2.39 -0.02 1.37 16 26 H 0.03 0.79 7.99 -2.39 -0.02 0.77 16 27 H 0.08 2.19 4.28 -2.39 -0.01 2.18 16 28 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.10 1.89 6.90 -2.39 -0.02 1.88 16 30 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.07 2.08 7.72 -2.38 -0.02 2.06 16 33 H 0.03 1.04 7.79 -2.39 -0.02 1.02 16 34 H 0.07 2.06 6.39 -2.39 -0.02 2.05 16 35 H 0.04 1.56 6.34 -2.38 -0.02 1.54 16 36 H 0.04 1.45 7.54 -2.39 -0.02 1.43 16 37 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.02 1.07 6.80 -2.39 -0.02 1.05 16 39 H 0.07 2.33 7.29 -2.39 -0.02 2.31 16 40 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 41 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 42 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -66.32 337.76 2.80 -63.52 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.94 Total: 10.26 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 6.17 Total: -31.52 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -4.88 Total: -90.02 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.31 Total: 1.15 kcal Total: -66.32 2.80 -63.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093844157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.119 kcal (2) G-P(sol) polarization free energy of solvation -66.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds