Wall clock time and date at job start Tue Mar 31 2020 05:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.47394 * 2 1 4 4 N 1.30848 * 125.83834 * 270.18479 * 3 2 1 5 5 N 1.40067 * 108.38512 * 180.22443 * 4 3 2 6 6 C 1.46498 * 126.03972 * 179.79359 * 5 4 3 7 7 C 1.35253 * 107.91877 * 359.75631 * 5 4 3 8 8 N 1.39203 * 126.22072 * 179.97438 * 7 5 4 9 9 C 1.46902 * 111.00065 * 205.83689 * 8 7 5 10 10 C 1.52994 * 109.47020 * 173.18398 * 9 8 7 11 11 C 1.53003 * 109.47073 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.47073 * 180.02562 * 11 10 9 13 13 H 1.07995 * 119.99941 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99859 * 179.97438 * 12 11 10 15 15 N 1.31524 * 120.00175 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00177 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47201 * 89.99742 * 16 14 12 18 18 H 1.48504 * 109.47281 * 210.00158 * 16 14 12 19 19 H 1.48506 * 109.46777 * 329.99954 * 16 14 12 20 20 C 1.36172 * 107.55534 * 0.02562 * 7 5 4 21 21 N 1.48030 * 126.08900 * 179.97438 * 20 7 5 22 22 O 1.21799 * 120.00267 * 89.99954 * 21 20 7 23 23 O 1.21802 * 120.00066 * 269.71353 * 21 20 7 24 24 H 1.09003 * 109.47554 * 59.99441 * 1 2 3 25 25 H 1.09001 * 109.47524 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46866 * 300.00156 * 1 2 3 27 27 H 1.09006 * 109.46866 * 239.99844 * 2 1 3 28 28 H 1.09003 * 109.47554 * 120.00559 * 2 1 3 29 29 H 1.09000 * 109.47105 * 274.75732 * 6 5 4 30 30 H 1.09002 * 109.47066 * 34.75370 * 6 5 4 31 31 H 1.09001 * 109.47425 * 154.75655 * 6 5 4 32 32 H 1.00894 * 111.00360 * 329.79447 * 8 7 5 33 33 H 1.08996 * 109.47480 * 293.18689 * 9 8 7 34 34 H 1.09001 * 109.46695 * 53.18744 * 9 8 7 35 35 H 1.09008 * 109.47587 * 300.00265 * 10 9 8 36 36 H 1.08997 * 109.47237 * 60.00113 * 10 9 8 37 37 H 1.09005 * 109.46721 * 299.99495 * 11 10 9 38 38 H 1.08997 * 109.47454 * 59.99686 * 11 10 9 39 39 H 0.96998 * 119.99788 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2845 2.1442 -1.0607 5 7 2.7361 3.4017 -0.6407 6 6 3.1317 4.5108 -1.5122 7 6 2.7417 3.4114 0.7118 8 7 3.1247 4.4742 1.5252 9 6 3.5896 3.9949 2.8336 10 6 4.1587 5.1682 3.6338 11 6 4.6435 4.6688 4.9964 12 6 5.2035 5.8246 5.7848 13 1 5.2131 6.8161 5.3567 14 6 5.7036 5.6163 7.0526 15 7 5.6916 4.4090 7.5742 16 14 6.3984 7.0488 8.0297 17 1 5.3147 7.6747 8.8291 18 1 7.4640 6.5569 8.9396 19 1 6.9690 8.0537 7.0969 20 6 2.3057 2.1921 1.1331 21 7 2.1534 1.7590 2.5404 22 8 1.0977 1.9366 3.1214 23 8 3.0820 1.2204 3.1158 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 4.1766 4.3927 -1.7990 30 1 2.5075 4.5111 -2.4058 31 1 3.0053 5.4538 -0.9804 32 1 3.8300 5.0381 1.0752 33 1 2.7536 3.5555 3.3777 34 1 4.3653 3.2426 2.6903 35 1 4.9948 5.6076 3.0897 36 1 3.3831 5.9204 3.7771 37 1 3.8076 4.2293 5.5407 38 1 5.4192 3.9167 4.8527 39 1 6.0431 4.2625 8.4663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094155631.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:03 Heat of formation + Delta-G solvation = 66.677844 kcal Electronic energy + Delta-G solvation = -22480.566461 eV Core-core repulsion = 19042.250276 eV Total energy + Delta-G solvation = -3438.316185 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.54010 -41.21573 -37.28155 -36.13985 -35.16127 -33.64975 -32.32908 -31.60091 -29.73289 -27.83059 -26.41443 -25.28665 -23.80751 -23.02539 -21.28553 -20.91230 -19.90388 -18.71471 -18.44940 -17.33487 -16.85751 -16.37572 -16.24027 -15.46171 -15.15496 -14.71754 -14.46204 -14.19655 -13.93317 -13.56709 -13.28191 -12.83712 -12.35848 -12.10483 -12.03022 -11.81173 -11.67339 -11.33945 -11.26580 -11.02743 -10.87452 -10.84285 -10.77411 -10.61422 -10.53207 -9.87509 -9.53376 -9.50212 -9.15135 -8.64854 -8.36414 -6.00191 -4.04367 0.80666 1.17453 1.32268 1.86822 2.11549 3.31782 3.33043 3.38168 3.40570 3.90277 4.16449 4.44760 4.60377 4.63222 4.68588 4.94029 4.95162 4.98412 5.08954 5.17129 5.28305 5.35443 5.57072 5.61245 5.70129 5.82407 5.85739 5.96969 6.16113 6.36363 6.54968 6.63435 6.71285 6.92671 7.07356 7.63043 7.73790 7.90535 7.97088 8.36467 9.01709 9.59767 11.10826 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.025124 B = 0.003917 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.204169 B = 7147.342352 C = 8001.218114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C 0.151 3.849 4 N -0.276 5.276 5 N -0.380 5.380 6 C 0.099 3.901 7 C 0.361 3.639 8 N -0.598 5.598 9 C 0.042 3.958 10 C -0.106 4.106 11 C 0.025 3.975 12 C -0.525 4.525 13 H 0.055 0.945 14 C 0.059 3.941 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.232 4.232 21 N 0.061 4.939 22 O -0.143 6.143 23 O -0.137 6.137 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.371 0.629 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.022 0.978 38 H 0.020 0.980 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.897 -4.412 -20.033 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 C -0.019 4.019 4 N -0.097 5.097 5 N -0.166 5.166 6 C -0.042 4.042 7 C 0.130 3.870 8 N -0.228 5.228 9 C -0.084 4.084 10 C -0.144 4.144 11 C -0.013 4.013 12 C -0.564 4.564 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.329 4.329 21 N 0.590 4.410 22 O -0.365 6.365 23 O -0.359 6.359 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.198 0.802 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.281 -3.875 -21.735 23.248 hybrid contribution 1.083 0.651 1.527 1.982 sum -6.198 -3.224 -20.208 21.382 Atomic orbital electron populations 1.21744 0.93023 1.02787 1.03028 1.20192 0.97210 0.87448 1.04530 1.21886 0.95861 0.97135 0.87005 1.77538 1.23004 0.89269 1.19893 1.48230 1.53709 1.12654 1.01991 1.22050 1.02085 0.85322 0.94717 1.18871 0.94686 0.89161 0.84234 1.57395 1.43816 1.16307 1.05234 1.22973 1.00111 1.00760 0.84532 1.21739 0.99265 0.94912 0.98485 1.19049 0.96675 0.96808 0.88782 1.21139 1.40537 0.94457 1.00218 0.92690 1.25022 0.95947 0.95650 0.97706 1.69977 1.46057 1.20450 1.16310 0.86586 0.78811 0.82515 0.80014 1.20591 1.21162 1.19972 1.19886 1.32794 0.97020 0.83199 1.42449 0.99860 0.97729 1.00947 1.94550 1.16387 1.58751 1.66765 1.94603 1.32947 1.41276 1.67105 0.92015 0.91149 0.91796 0.88858 0.89626 0.89817 0.88229 0.88615 0.80248 0.89997 0.91793 0.92859 0.91857 0.95936 0.96176 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 37.15 0.37 -1.01 16 2 C -0.05 -0.57 6.49 -27.89 -0.18 -0.75 16 3 C 0.15 2.03 6.46 -82.44 -0.53 1.50 16 4 N -0.28 -3.57 12.56 33.65 0.42 -3.15 16 5 N -0.38 -4.43 4.02 -67.24 -0.27 -4.70 16 6 C 0.10 0.64 11.16 59.85 0.67 1.31 16 7 C 0.36 5.11 7.24 -153.41 -1.11 4.00 16 8 N -0.60 -8.37 6.55 -60.18 -0.39 -8.76 16 9 C 0.04 0.74 4.10 -3.83 -0.02 0.72 16 10 C -0.11 -2.10 5.34 -26.73 -0.14 -2.25 16 11 C 0.02 0.63 4.97 -27.88 -0.14 0.50 16 12 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 16 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 20 C -0.23 -3.63 6.32 -80.11 -0.51 -4.14 16 21 N 0.06 1.09 2.39 33.88 0.08 1.17 16 22 O -0.14 -2.69 18.62 -29.46 -0.55 -3.24 16 23 O -0.14 -2.62 17.56 -29.46 -0.52 -3.13 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.48 7.65 -51.93 -0.40 0.08 16 32 H 0.37 4.02 7.91 -39.29 -0.31 3.71 16 33 H 0.08 1.64 5.45 -51.93 -0.28 1.36 16 34 H 0.06 1.17 7.37 -51.93 -0.38 0.79 16 35 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -33.45 336.39 -8.01 -41.46 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.57 Total: -1.49 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -2.00 Total: -13.61 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.58 Total: -41.61 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -1.07 Total: -6.37 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.45 -8.01 -41.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094155631.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.139 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds