Wall clock time and date at job start Tue Mar 31 2020 06:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31779 * 122.74781 * 2 1 4 4 C 1.29033 * 117.12374 * 179.72326 * 3 2 1 5 5 C 1.50706 * 124.91593 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.46980 * 69.46014 * 5 4 3 7 7 C 1.46898 * 110.99895 * 201.58910 * 6 5 4 8 8 C 1.50702 * 109.47183 * 164.20078 * 7 6 5 9 9 H 1.07991 * 119.99855 * 4.90028 * 8 7 6 10 10 C 1.37875 * 119.99742 * 184.90081 * 8 7 6 11 11 N 1.31513 * 120.00416 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99731 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47347 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47587 * 119.99969 * 12 10 8 15 15 H 1.48510 * 109.46930 * 239.99664 * 12 10 8 16 16 C 1.46904 * 110.99929 * 77.63618 * 6 5 4 17 17 C 1.52999 * 109.47143 * 280.33728 * 16 6 5 18 18 C 1.53003 * 109.46963 * 177.95713 * 17 16 6 19 19 C 1.52992 * 109.46831 * 297.95813 * 17 16 6 20 20 S 1.70977 * 110.16837 * 0.02562 * 4 3 2 21 21 C 1.33637 * 122.74862 * 179.70114 * 2 1 3 22 22 C 1.50703 * 126.04124 * 0.25494 * 21 2 1 23 23 H 1.09006 * 109.46306 * 90.02498 * 1 2 3 24 24 H 1.08999 * 109.47048 * 210.02464 * 1 2 3 25 25 H 1.08999 * 109.47247 * 330.03203 * 1 2 3 26 26 H 1.08999 * 109.47000 * 189.46230 * 5 4 3 27 27 H 1.08998 * 109.46985 * 309.45799 * 5 4 3 28 28 H 1.09008 * 109.46891 * 284.20099 * 7 6 5 29 29 H 1.09000 * 109.47360 * 44.19672 * 7 6 5 30 30 H 0.96998 * 120.00331 * 180.02562 * 11 10 8 31 31 H 1.09005 * 109.47010 * 40.34051 * 16 6 5 32 32 H 1.08996 * 109.47111 * 160.33304 * 16 6 5 33 33 H 1.08999 * 109.46835 * 57.95997 * 17 16 6 34 34 H 1.09003 * 109.46891 * 60.00006 * 18 17 16 35 35 H 1.08998 * 109.46854 * 179.97438 * 18 17 16 36 36 H 1.08997 * 109.47163 * 300.00073 * 18 17 16 37 37 H 1.09001 * 109.47503 * 304.94633 * 19 17 16 38 38 H 1.08998 * 109.47559 * 64.95419 * 19 17 16 39 39 H 1.09010 * 109.46838 * 184.95648 * 19 17 16 40 40 H 1.09000 * 109.46678 * 89.99964 * 22 21 2 41 41 H 1.08996 * 109.47137 * 210.00458 * 22 21 2 42 42 H 1.08997 * 109.46611 * 330.00028 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9819 0.0055 5 6 4.4835 2.1272 0.0071 6 7 4.4272 2.8179 1.3023 7 6 4.9450 4.1881 1.1911 8 6 4.5254 4.9834 2.4005 9 1 4.0017 4.4981 3.2107 10 6 4.8101 6.3305 2.4724 11 7 5.4483 6.9214 1.4859 12 14 4.2907 7.3161 3.9718 13 1 3.5938 6.4244 4.9333 14 1 5.4916 7.9015 4.6199 15 1 3.3729 8.4063 3.5538 16 6 5.1520 2.0632 2.3334 17 6 4.2730 0.9176 2.8393 18 6 5.0467 0.1010 3.8764 19 6 3.0082 1.4907 3.4816 20 16 3.9333 -0.6731 0.0109 21 6 2.2299 -1.1239 0.0059 22 6 1.6847 -2.5289 0.0078 23 1 -0.3632 -0.0004 -1.0278 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8903 0.5133 26 1 5.4907 1.7441 -0.1569 27 1 4.2266 2.8261 -0.7889 28 1 6.0332 4.1616 1.1333 29 1 4.5447 4.6560 0.2917 30 1 5.6490 7.8690 1.5367 31 1 6.0697 1.6567 1.9084 32 1 5.3982 2.7259 3.1629 33 1 3.9969 0.2751 2.0033 34 1 5.3228 0.7436 4.7124 35 1 4.4203 -0.7149 4.2371 36 1 5.9478 -0.3072 3.4188 37 1 3.2859 2.2010 4.2604 38 1 2.4130 1.9981 2.7224 39 1 2.4245 0.6810 3.9198 40 1 1.5571 -2.8704 -1.0195 41 1 2.3810 -3.1881 0.5261 42 1 0.7217 -2.5441 0.5180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094966444.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:37 Heat of formation + Delta-G solvation = 32.731313 kcal Electronic energy + Delta-G solvation = -20889.842729 eV Core-core repulsion = 17996.347727 eV Total energy + Delta-G solvation = -2893.495002 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.79899 -37.47282 -34.11763 -33.30390 -32.22939 -29.81919 -28.34538 -26.65790 -26.54261 -24.95222 -24.36323 -22.14524 -20.67224 -19.47753 -18.53319 -17.72108 -16.31426 -15.54661 -14.90611 -14.66881 -14.56799 -14.11136 -13.69589 -13.46906 -13.25775 -13.08814 -12.99391 -12.73607 -12.43784 -12.28852 -12.13096 -12.00154 -11.73352 -11.42173 -11.22687 -11.02972 -10.95743 -10.80975 -10.65042 -10.39465 -10.23582 -10.03402 -9.74871 -9.31509 -9.11608 -8.82370 -8.41603 -8.15896 -7.29435 -6.00203 -4.00324 0.93396 1.53808 1.95113 3.07065 3.33274 3.40889 3.46237 4.35606 4.45867 4.90116 4.97569 5.08301 5.26993 5.34369 5.36292 5.40954 5.44593 5.48733 5.64806 5.66393 5.75198 5.77264 5.86943 5.98746 6.01709 6.12275 6.13756 6.23113 6.35047 6.48447 6.48668 6.55371 6.62982 6.93974 7.08488 7.24996 7.29180 7.82766 8.06136 8.14866 8.19774 8.52774 9.07259 9.63350 11.10688 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.004970 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.940342 B = 5632.388744 C = 5833.292848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.067 3.933 3 N -0.447 5.447 4 C 0.095 3.905 5 C 0.125 3.875 6 N -0.518 5.518 7 C 0.195 3.805 8 C -0.499 4.499 9 H 0.065 0.935 10 C 0.055 3.945 11 N -0.900 5.900 12 Si 0.896 3.104 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.284 1.284 16 C 0.065 3.935 17 C -0.107 4.107 18 C -0.142 4.142 19 C -0.129 4.129 20 S 0.084 5.916 21 C -0.243 4.243 22 C -0.068 4.068 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.098 0.902 28 H -0.010 1.010 29 H 0.035 0.965 30 H 0.260 0.740 31 H 0.019 0.981 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.029 0.971 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.754 -18.311 -2.491 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 N -0.160 5.160 4 C -0.185 4.185 5 C -0.008 4.008 6 N -0.242 5.242 7 C 0.071 3.929 8 C -0.538 4.538 9 H 0.083 0.917 10 C -0.146 4.146 11 N -0.540 5.540 12 Si 0.724 3.276 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.064 4.064 17 C -0.127 4.127 18 C -0.200 4.200 19 C -0.186 4.186 20 S 0.340 5.660 21 C -0.364 4.364 22 C -0.127 4.127 23 H 0.090 0.910 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.064 0.936 27 H 0.116 0.884 28 H 0.008 0.992 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.428 -18.086 -2.419 18.777 hybrid contribution -0.185 0.659 0.543 0.874 sum -4.613 -17.427 -1.875 18.124 Atomic orbital electron populations 1.20335 0.87687 1.03123 1.02466 1.20214 0.98007 0.86366 1.01931 1.66094 1.04488 1.30356 1.15101 1.27163 0.94192 0.96639 1.00538 1.20736 0.92466 0.91633 0.95933 1.61930 1.56407 1.03785 1.02084 1.19804 0.92950 0.81540 0.98641 1.21162 1.36078 0.93136 1.03382 0.91694 1.24957 0.95426 0.97728 0.96449 1.69959 1.41333 1.11007 1.31691 0.86471 0.78176 0.80048 0.82907 1.19668 1.21210 1.21063 1.22201 0.92866 0.94896 0.96412 1.21520 0.96360 0.96721 0.98120 1.21787 0.99571 0.99447 0.99220 1.21608 0.96933 0.99204 1.00860 1.83870 1.07538 1.04976 1.69566 1.25508 0.94933 1.00627 1.15293 1.20155 1.00850 0.89424 1.02304 0.91017 0.91136 0.90488 0.93581 0.88406 0.99204 0.94672 0.93035 0.96251 0.89667 0.91339 0.92834 0.93426 0.93389 0.93195 0.91058 0.95168 0.91106 0.91565 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.06 36.01 0.36 -0.52 16 2 C 0.07 0.98 6.74 -84.23 -0.57 0.42 16 3 N -0.45 -7.96 10.53 -8.05 -0.08 -8.04 16 4 C 0.09 1.61 4.99 -13.45 -0.07 1.54 16 5 C 0.12 2.29 5.61 -4.98 -0.03 2.26 16 6 N -0.52 -11.05 3.77 -237.51 -0.89 -11.94 16 7 C 0.20 4.99 4.71 -4.98 -0.02 4.96 16 8 C -0.50 -13.88 8.39 -34.44 -0.29 -14.17 16 9 H 0.06 1.82 7.59 -52.49 -0.40 1.42 16 10 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 12 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 C 0.06 1.25 4.24 -3.82 -0.02 1.24 16 17 C -0.11 -1.82 2.69 -90.62 -0.24 -2.06 16 18 C -0.14 -2.04 9.19 37.16 0.34 -1.70 16 19 C -0.13 -2.33 8.99 37.15 0.33 -2.00 16 20 S 0.08 1.16 20.93 -107.50 -2.25 -1.09 16 21 C -0.24 -3.15 6.59 -35.92 -0.24 -3.39 16 22 C -0.07 -0.62 10.10 36.01 0.36 -0.25 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.64 6.71 -51.93 -0.35 0.29 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.77 7.64 -51.93 -0.40 0.37 16 27 H 0.10 1.84 7.61 -51.93 -0.40 1.44 16 28 H -0.01 -0.26 8.05 -51.92 -0.42 -0.68 16 29 H 0.04 0.97 7.67 -51.93 -0.40 0.57 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.02 0.36 7.63 -51.93 -0.40 -0.04 16 32 H 0.08 1.83 6.95 -51.93 -0.36 1.47 16 33 H 0.07 1.13 3.35 -37.05 -0.12 1.01 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.47 7.81 -51.93 -0.41 1.07 16 39 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.59 6.75 -51.93 -0.35 0.24 16 LS Contribution 346.48 15.07 5.22 5.22 Total: -1.00 -30.34 346.48 -9.39 -39.74 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -6.93 Total: -2.62 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -0.17 Total: -12.19 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.24 Total: -45.85 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.25 Total: -1.09 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.34 -9.39 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094966444.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.468 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds