Wall clock time and date at job start Tue Mar 31 2020 06:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31779 * 122.74781 * 2 1 4 4 C 1.29033 * 117.12374 * 179.72326 * 3 2 1 5 5 C 1.50706 * 124.91593 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.46980 * 69.46014 * 5 4 3 7 7 C 1.46898 * 110.99895 * 201.58910 * 6 5 4 8 8 C 1.50702 * 109.47183 * 164.20078 * 7 6 5 9 9 H 1.07991 * 119.99855 * 4.90028 * 8 7 6 10 10 C 1.37875 * 119.99742 * 184.90081 * 8 7 6 11 11 N 1.31513 * 120.00416 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99731 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47347 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47587 * 119.99969 * 12 10 8 15 15 H 1.48510 * 109.46930 * 239.99664 * 12 10 8 16 16 C 1.46904 * 110.99929 * 77.63618 * 6 5 4 17 17 C 1.52999 * 109.47143 * 280.33728 * 16 6 5 18 18 C 1.53003 * 109.46963 * 177.95713 * 17 16 6 19 19 C 1.52992 * 109.46831 * 297.95813 * 17 16 6 20 20 S 1.70977 * 110.16837 * 0.02562 * 4 3 2 21 21 C 1.33637 * 122.74862 * 179.70114 * 2 1 3 22 22 C 1.50703 * 126.04124 * 0.25494 * 21 2 1 23 23 H 1.09006 * 109.46306 * 90.02498 * 1 2 3 24 24 H 1.08999 * 109.47048 * 210.02464 * 1 2 3 25 25 H 1.08999 * 109.47247 * 330.03203 * 1 2 3 26 26 H 1.08999 * 109.47000 * 189.46230 * 5 4 3 27 27 H 1.08998 * 109.46985 * 309.45799 * 5 4 3 28 28 H 1.09008 * 109.46891 * 284.20099 * 7 6 5 29 29 H 1.09000 * 109.47360 * 44.19672 * 7 6 5 30 30 H 0.96998 * 120.00331 * 180.02562 * 11 10 8 31 31 H 1.09005 * 109.47010 * 40.34051 * 16 6 5 32 32 H 1.08996 * 109.47111 * 160.33304 * 16 6 5 33 33 H 1.08999 * 109.46835 * 57.95997 * 17 16 6 34 34 H 1.09003 * 109.46891 * 60.00006 * 18 17 16 35 35 H 1.08998 * 109.46854 * 179.97438 * 18 17 16 36 36 H 1.08997 * 109.47163 * 300.00073 * 18 17 16 37 37 H 1.09001 * 109.47503 * 304.94633 * 19 17 16 38 38 H 1.08998 * 109.47559 * 64.95419 * 19 17 16 39 39 H 1.09010 * 109.46838 * 184.95648 * 19 17 16 40 40 H 1.09000 * 109.46678 * 89.99964 * 22 21 2 41 41 H 1.08996 * 109.47137 * 210.00458 * 22 21 2 42 42 H 1.08997 * 109.46611 * 330.00028 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9819 0.0055 5 6 4.4835 2.1272 0.0071 6 7 4.4272 2.8179 1.3023 7 6 4.9450 4.1881 1.1911 8 6 4.5254 4.9834 2.4005 9 1 4.0017 4.4981 3.2107 10 6 4.8101 6.3305 2.4724 11 7 5.4483 6.9214 1.4859 12 14 4.2907 7.3161 3.9718 13 1 3.5938 6.4244 4.9333 14 1 5.4916 7.9015 4.6199 15 1 3.3729 8.4063 3.5538 16 6 5.1520 2.0632 2.3334 17 6 4.2730 0.9176 2.8393 18 6 5.0467 0.1010 3.8764 19 6 3.0082 1.4907 3.4816 20 16 3.9333 -0.6731 0.0109 21 6 2.2299 -1.1239 0.0059 22 6 1.6847 -2.5289 0.0078 23 1 -0.3632 -0.0004 -1.0278 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8903 0.5133 26 1 5.4907 1.7441 -0.1569 27 1 4.2266 2.8261 -0.7889 28 1 6.0332 4.1616 1.1333 29 1 4.5447 4.6560 0.2917 30 1 5.6490 7.8690 1.5367 31 1 6.0697 1.6567 1.9084 32 1 5.3982 2.7259 3.1629 33 1 3.9969 0.2751 2.0033 34 1 5.3228 0.7436 4.7124 35 1 4.4203 -0.7149 4.2371 36 1 5.9478 -0.3072 3.4188 37 1 3.2859 2.2010 4.2604 38 1 2.4130 1.9981 2.7224 39 1 2.4245 0.6810 3.9198 40 1 1.5571 -2.8704 -1.0195 41 1 2.3810 -3.1881 0.5261 42 1 0.7217 -2.5441 0.5180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094966444.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:36 Heat of formation + Delta-G solvation = 14.505507 kcal Electronic energy + Delta-G solvation = -20890.633060 eV Core-core repulsion = 17996.347727 eV Total energy + Delta-G solvation = -2894.285333 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.98389 -39.02515 -35.65150 -34.81992 -33.87477 -30.84874 -29.86710 -28.30257 -27.91069 -26.34703 -25.67304 -23.73178 -22.28406 -20.93093 -19.68179 -18.89948 -18.37389 -17.07269 -16.52008 -16.10994 -15.99197 -15.51472 -15.15299 -14.88242 -14.36138 -14.25775 -14.20121 -13.78799 -13.74382 -13.65093 -13.49523 -13.28248 -13.03899 -12.81317 -12.77677 -12.71283 -12.53020 -12.46692 -12.07117 -11.94152 -11.78042 -11.54421 -11.44822 -11.28355 -10.60758 -10.38955 -9.93012 -9.28793 -9.02918 -8.18909 -6.27204 -0.20527 0.42562 0.81898 1.38921 1.40313 1.53362 1.91016 2.40720 3.12523 3.18696 3.32326 3.98282 4.03390 4.13275 4.14061 4.22698 4.29339 4.38016 4.50681 4.62198 4.64608 4.73064 4.82528 4.84560 4.86969 4.90287 5.00070 5.04693 5.08663 5.10386 5.12531 5.19124 5.22400 5.30537 5.50467 5.54074 5.60725 5.67699 6.06062 6.36243 6.56915 6.87271 7.00498 7.41216 8.92015 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.004970 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.940342 B = 5632.388744 C = 5833.292848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.036 3.964 3 N -0.479 5.479 4 C 0.058 3.942 5 C 0.126 3.874 6 N -0.526 5.526 7 C 0.212 3.788 8 C -0.511 4.511 9 H 0.058 0.942 10 C 0.004 3.996 11 N -0.934 5.934 12 Si 0.964 3.036 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.280 1.280 16 C 0.068 3.932 17 C -0.102 4.102 18 C -0.138 4.138 19 C -0.121 4.121 20 S 0.126 5.874 21 C -0.224 4.224 22 C -0.071 4.071 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.080 0.920 28 H -0.031 1.031 29 H 0.006 0.994 30 H 0.264 0.736 31 H 0.030 0.970 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.034 0.966 38 H 0.039 0.961 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.589 -21.277 -1.562 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 N -0.193 5.193 4 C -0.221 4.221 5 C -0.006 4.006 6 N -0.250 5.250 7 C 0.086 3.914 8 C -0.550 4.550 9 H 0.077 0.923 10 C -0.194 4.194 11 N -0.575 5.575 12 Si 0.789 3.211 13 H -0.191 1.191 14 H -0.202 1.202 15 H -0.206 1.206 16 C -0.060 4.060 17 C -0.122 4.122 18 C -0.196 4.196 19 C -0.178 4.178 20 S 0.383 5.617 21 C -0.345 4.345 22 C -0.130 4.130 23 H 0.101 0.899 24 H 0.117 0.883 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.098 0.902 28 H -0.014 1.014 29 H 0.024 0.976 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.264 -21.070 -1.491 21.769 hybrid contribution 0.047 1.460 0.182 1.472 sum -5.217 -19.610 -1.309 20.335 Atomic orbital electron populations 1.20414 0.85752 1.03669 1.03407 1.20660 0.99387 0.86112 1.03380 1.66062 1.05282 1.32821 1.15160 1.26643 0.93921 0.97993 1.03553 1.20633 0.94019 0.92117 0.93795 1.61833 1.56472 1.02463 1.04236 1.19412 0.91304 0.84109 0.96600 1.21404 1.35917 0.93806 1.03849 0.92337 1.25813 0.95330 0.98821 0.99412 1.70075 1.42339 1.11463 1.33609 0.85414 0.78039 0.78374 0.79277 1.19123 1.20203 1.20581 1.22196 0.93854 0.95019 0.94966 1.21504 0.95583 0.95953 0.99135 1.21753 1.00112 0.99466 0.98230 1.21504 0.97390 0.99373 0.99536 1.83597 1.08042 1.01647 1.68450 1.26119 0.94203 1.02151 1.12038 1.20384 1.01862 0.86758 1.03977 0.89876 0.88267 0.92217 0.92100 0.90209 1.01370 0.97625 0.92755 0.95227 0.92360 0.90467 0.93156 0.91393 0.91981 0.94649 0.94156 0.92907 0.89222 0.90215 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.54 10.06 71.24 0.72 -0.83 16 2 C 0.04 0.99 6.74 41.52 0.28 1.27 16 3 N -0.48 -17.13 10.53 -179.39 -1.89 -19.02 16 4 C 0.06 1.96 4.99 88.52 0.44 2.40 16 5 C 0.13 4.84 5.61 85.56 0.48 5.32 16 6 N -0.53 -23.50 3.77 -905.35 -3.41 -26.91 16 7 C 0.21 11.48 4.71 85.56 0.40 11.88 16 8 C -0.51 -29.62 8.39 25.60 0.21 -29.41 16 9 H 0.06 3.40 7.59 -2.92 -0.02 3.37 16 10 C 0.00 0.23 5.46 84.65 0.46 0.69 16 11 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 12 Si 0.96 45.56 29.54 68.60 2.03 47.58 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 C 0.07 2.67 4.24 86.30 0.37 3.04 16 17 C -0.10 -3.35 2.69 -10.80 -0.03 -3.38 16 18 C -0.14 -3.60 9.19 71.98 0.66 -2.94 16 19 C -0.12 -4.33 8.99 71.98 0.65 -3.69 16 20 S 0.13 3.22 20.93 -56.49 -1.18 2.04 16 21 C -0.22 -5.14 6.59 24.64 0.16 -4.98 16 22 C -0.07 -0.95 10.10 71.24 0.72 -0.23 16 23 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 24 H 0.10 1.45 6.71 -2.39 -0.02 1.44 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 2.09 7.64 -2.39 -0.02 2.07 16 27 H 0.08 3.25 7.61 -2.39 -0.02 3.23 16 28 H -0.03 -1.79 8.05 -2.38 -0.02 -1.81 16 29 H 0.01 0.33 7.67 -2.39 -0.02 0.31 16 30 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.03 1.09 7.63 -2.38 -0.02 1.07 16 32 H 0.06 2.59 6.95 -2.39 -0.02 2.58 16 33 H 0.08 2.43 3.35 -11.85 -0.04 2.39 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.04 1.69 7.81 -2.39 -0.02 1.67 16 39 H 0.05 1.61 8.14 -2.38 -0.02 1.60 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.10 0.99 6.75 -2.39 -0.02 0.98 16 Total: -1.00 -68.27 346.48 2.31 -65.96 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.95 Total: 7.81 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 5.53 Total: -20.85 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -5.01 Total: -102.54 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.18 Total: 2.04 kcal Total: -68.27 2.31 -65.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094966444.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.463 kcal (2) G-P(sol) polarization free energy of solvation -68.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds