Wall clock time and date at job start Tue Mar 31 2020 06:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29031 * 124.91615 * 2 1 4 4 C 1.31785 * 117.12288 * 179.75249 * 3 2 1 5 5 C 1.50698 * 122.74859 * 180.32846 * 4 3 2 6 6 C 1.33635 * 114.50265 * 0.50928 * 4 3 2 7 7 C 1.50693 * 126.04106 * 179.79296 * 6 4 3 8 8 H 1.09005 * 109.46929 * 345.54371 * 7 6 4 9 9 C 1.52996 * 109.47305 * 105.54248 * 7 6 4 10 10 N 1.46900 * 109.47327 * 225.54596 * 7 6 4 11 11 C 1.46904 * 111.00214 * 184.91740 * 10 7 6 12 12 C 1.46895 * 111.00428 * 60.95973 * 10 7 6 13 13 C 1.52996 * 109.47466 * 190.00274 * 12 10 7 14 14 C 1.53006 * 109.47383 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.47103 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00144 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99825 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99984 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 119.99984 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47002 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47228 * 119.99999 * 19 17 15 22 22 H 1.48506 * 109.47083 * 240.00304 * 19 17 15 23 23 S 1.70978 * 124.91770 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.46954 * 269.96479 * 1 2 3 25 25 H 1.09000 * 109.46866 * 29.96824 * 1 2 3 26 26 H 1.08995 * 109.46711 * 149.96764 * 1 2 3 27 27 H 1.08998 * 109.47290 * 270.19912 * 5 4 3 28 28 H 1.09008 * 109.47310 * 30.20003 * 5 4 3 29 29 H 1.08998 * 109.47129 * 150.19330 * 5 4 3 30 30 H 1.09006 * 109.47276 * 180.02562 * 9 7 6 31 31 H 1.08998 * 109.46885 * 300.00112 * 9 7 6 32 32 H 1.08992 * 109.47236 * 60.00246 * 9 7 6 33 33 H 1.08992 * 109.46960 * 65.30524 * 11 10 7 34 34 H 1.08996 * 109.47060 * 185.31093 * 11 10 7 35 35 H 1.09000 * 109.46678 * 305.30905 * 11 10 7 36 36 H 1.09007 * 109.47097 * 310.00619 * 12 10 7 37 37 H 1.08996 * 109.47033 * 69.99995 * 12 10 7 38 38 H 1.09000 * 109.47119 * 299.99561 * 13 12 10 39 39 H 1.09003 * 109.47016 * 60.00157 * 13 12 10 40 40 H 1.08995 * 109.46982 * 300.00703 * 14 13 12 41 41 H 1.09003 * 109.46709 * 60.00223 * 14 13 12 42 42 H 0.96996 * 120.00493 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0051 5 6 4.5307 2.0245 0.0130 6 6 3.9355 -0.4006 -0.0012 7 6 5.3575 -0.8994 -0.0020 8 1 6.0301 -0.0792 -0.2534 9 6 5.7090 -1.4403 1.3853 10 7 5.4998 -1.9715 -0.9961 11 6 6.8437 -2.5625 -0.9444 12 6 5.1917 -1.4818 -2.3464 13 6 5.1060 -2.6661 -3.3112 14 6 4.7844 -2.1561 -4.7175 15 6 4.7006 -3.3226 -5.6679 16 1 4.8602 -4.3272 -5.3052 17 6 4.4190 -3.1073 -7.0004 18 7 4.2242 -1.8839 -7.4420 19 14 4.3144 -4.5532 -8.1783 20 1 4.5721 -5.8144 -7.4380 21 1 2.9591 -4.6018 -8.7832 22 1 5.3296 -4.3928 -9.2503 23 16 2.4857 -1.4020 -0.0006 24 1 -0.3633 -0.0006 1.0276 25 1 -0.3633 0.8903 -0.5133 26 1 -0.3632 -0.8897 -0.5143 27 1 4.7686 2.3063 -1.0127 28 1 4.0897 2.8764 0.5308 29 1 5.4423 1.7194 0.5268 30 1 6.7378 -1.8007 1.3848 31 1 5.6035 -0.6447 2.1228 32 1 5.0366 -2.2603 1.6366 33 1 6.9843 -3.0619 0.0141 34 1 6.9533 -3.2871 -1.7512 35 1 7.5907 -1.7768 -1.0578 36 1 4.2378 -0.9544 -2.3328 37 1 5.9780 -0.8020 -2.6745 38 1 6.0598 -3.1934 -3.3249 39 1 4.3196 -3.3459 -2.9831 40 1 3.8305 -1.6290 -4.7035 41 1 5.5705 -1.4761 -5.0459 42 1 4.0265 -1.7324 -8.3794 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106878869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:26 Heat of formation + Delta-G solvation = 26.931798 kcal Electronic energy + Delta-G solvation = -20234.718556 eV Core-core repulsion = 17340.972068 eV Total energy + Delta-G solvation = -2893.746488 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.99411 -38.00592 -34.23091 -33.09723 -31.84068 -30.15045 -29.20151 -27.93635 -26.32180 -25.29302 -22.83918 -22.54884 -20.88213 -19.86963 -18.71697 -17.71479 -16.29359 -15.73890 -15.60982 -15.03566 -14.45573 -14.31886 -14.12602 -13.73082 -13.33405 -13.26788 -12.97586 -12.80175 -12.40570 -12.36775 -12.22404 -12.03100 -11.96807 -11.75648 -11.41768 -11.29251 -11.08717 -10.99942 -10.79944 -10.52461 -10.45008 -9.60026 -9.47404 -9.32751 -9.02849 -8.98578 -8.44626 -8.32300 -8.14020 -5.97158 -3.99187 0.81261 1.49810 1.96591 2.84605 3.32538 3.39849 3.44298 4.04449 4.15378 4.48873 4.70328 4.99283 5.08437 5.20832 5.27680 5.32879 5.37059 5.37439 5.38967 5.57625 5.58390 5.64969 5.68013 5.75671 5.80891 5.82417 5.94992 5.96602 6.07285 6.16288 6.32467 6.35413 6.71439 6.77605 7.12096 7.31032 7.35383 7.71549 7.86108 7.86438 8.03387 8.46592 9.08289 9.64702 11.14393 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016837 B = 0.004433 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.593212 B = 6315.036815 C = 7097.831235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.025 3.975 3 N -0.475 5.475 4 C 0.059 3.941 5 C -0.077 4.077 6 C -0.210 4.210 7 C 0.155 3.845 8 H 0.059 0.941 9 C -0.143 4.143 10 N -0.537 5.537 11 C 0.021 3.979 12 C 0.056 3.944 13 C -0.103 4.103 14 C 0.022 3.978 15 C -0.516 4.516 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.285 1.285 23 S 0.170 5.830 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.023 0.977 36 H 0.067 0.933 37 H 0.028 0.972 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.014 0.986 41 H 0.012 0.988 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.832 3.783 19.647 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.252 4.252 3 N -0.190 5.190 4 C -0.074 4.074 5 C -0.137 4.137 6 C -0.332 4.332 7 C 0.045 3.955 8 H 0.076 0.924 9 C -0.201 4.201 10 N -0.262 5.262 11 C -0.127 4.127 12 C -0.071 4.071 13 C -0.141 4.141 14 C -0.015 4.015 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 S 0.427 5.573 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.041 0.959 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.717 2.926 19.608 19.899 hybrid contribution 1.063 0.683 -1.101 1.676 sum -0.654 3.610 18.506 18.866 Atomic orbital electron populations 1.20393 0.85499 1.04245 1.03392 1.26976 1.01763 0.92218 1.04266 1.66121 1.04251 1.32067 1.16590 1.20073 0.90330 0.93834 1.03167 1.20337 0.95680 0.94707 1.02943 1.25564 0.99624 0.95561 1.12450 1.19959 0.88737 0.93184 0.93645 0.92351 1.21929 1.02035 1.01460 0.94653 1.62193 1.27658 1.30598 1.05740 1.22462 0.88101 0.99320 1.02792 1.22317 1.00036 0.98226 0.86571 1.21651 1.00637 0.95789 0.95987 1.19063 0.96669 0.96452 0.89330 1.21276 1.47575 0.93427 0.93188 0.92626 1.25029 0.95475 0.95573 0.98433 1.69978 1.48872 1.19681 1.15067 0.86555 0.77605 0.82926 0.81044 1.19708 1.21018 1.21071 1.84101 0.95999 1.10574 1.66665 0.89995 0.89527 0.90073 0.90714 0.90818 0.91070 0.91673 0.92218 0.91617 0.91567 0.90249 0.95853 0.91471 0.95348 0.93351 0.92609 0.96748 0.96925 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.46 36.01 0.38 -0.36 16 2 C 0.03 0.34 7.39 -13.45 -0.10 0.24 16 3 N -0.47 -7.25 10.53 -8.06 -0.08 -7.34 16 4 C 0.06 0.85 6.74 -84.23 -0.57 0.28 16 5 C -0.08 -0.89 9.81 36.00 0.35 -0.54 16 6 C -0.21 -2.97 3.85 -35.92 -0.14 -3.11 16 7 C 0.16 2.01 2.24 -68.87 -0.15 1.86 16 8 H 0.06 0.74 6.76 -51.93 -0.35 0.39 16 9 C -0.14 -1.49 8.78 37.16 0.33 -1.16 16 10 N -0.54 -8.04 4.54 -236.30 -1.07 -9.11 16 11 C 0.02 0.28 8.80 60.07 0.53 0.80 16 12 C 0.06 1.01 4.80 -3.83 -0.02 0.99 16 13 C -0.10 -2.18 5.10 -26.73 -0.14 -2.32 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 19 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 S 0.17 2.34 23.01 -107.50 -2.47 -0.14 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 29 H 0.07 0.69 7.02 -51.93 -0.36 0.32 16 30 H 0.06 0.60 6.46 -51.93 -0.34 0.26 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.73 6.55 -51.93 -0.34 0.39 16 34 H 0.08 1.13 6.11 -51.93 -0.32 0.81 16 35 H 0.02 0.29 8.13 -51.93 -0.42 -0.14 16 36 H 0.07 1.31 6.73 -51.93 -0.35 0.96 16 37 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.05 1.00 6.38 -51.93 -0.33 0.67 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 349.46 15.07 5.27 5.27 Total: -1.00 -32.21 349.46 -9.73 -41.94 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -7.00 Total: -4.28 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -0.08 Total: -16.54 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: -0.42 Total: -43.17 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.47 Total: -0.14 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.21 -9.73 -41.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106878869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.868 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds