Wall clock time and date at job start Tue Mar 31 2020 06:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29025 * 124.91925 * 2 1 4 4 C 1.31777 * 117.12415 * 180.22452 * 3 2 1 5 5 C 1.50706 * 122.74900 * 179.75618 * 4 3 2 6 6 C 1.33637 * 114.50097 * 359.48479 * 4 3 2 7 7 C 1.50700 * 126.03650 * 180.26738 * 6 4 3 8 8 H 1.08998 * 109.47321 * 15.00336 * 7 6 4 9 9 C 1.53000 * 109.47058 * 255.00137 * 7 6 4 10 10 N 1.46905 * 109.47337 * 135.00167 * 7 6 4 11 11 C 1.46892 * 110.99851 * 303.95679 * 10 7 6 12 12 C 1.46891 * 111.00359 * 179.97438 * 10 7 6 13 13 C 1.52998 * 109.47481 * 190.00293 * 12 10 7 14 14 C 1.52997 * 109.47120 * 180.02562 * 13 12 10 15 15 C 1.50707 * 109.46675 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00477 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99597 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99376 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00019 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47555 * 89.99662 * 19 17 15 21 21 H 1.48500 * 109.46924 * 209.99609 * 19 17 15 22 22 H 1.48500 * 109.47188 * 329.99167 * 19 17 15 23 23 S 1.70985 * 124.91418 * 179.69410 * 2 1 3 24 24 H 1.08997 * 109.47741 * 270.30328 * 1 2 3 25 25 H 1.09004 * 109.46884 * 30.30712 * 1 2 3 26 26 H 1.09008 * 109.47556 * 150.29932 * 1 2 3 27 27 H 1.09001 * 109.46953 * 269.70773 * 5 4 3 28 28 H 1.09000 * 109.47318 * 29.70371 * 5 4 3 29 29 H 1.09000 * 109.47161 * 149.71001 * 5 4 3 30 30 H 1.09004 * 109.47404 * 180.02562 * 9 7 6 31 31 H 1.08998 * 109.47433 * 299.99754 * 9 7 6 32 32 H 1.08992 * 109.47396 * 60.00224 * 9 7 6 33 33 H 1.08998 * 109.47765 * 59.99220 * 11 10 7 34 34 H 1.09004 * 109.47503 * 180.02562 * 11 10 7 35 35 H 1.09008 * 109.47116 * 299.99489 * 11 10 7 36 36 H 1.09004 * 109.47167 * 310.00114 * 12 10 7 37 37 H 1.09007 * 109.46943 * 69.99930 * 12 10 7 38 38 H 1.09004 * 109.46774 * 300.00062 * 13 12 10 39 39 H 1.08994 * 109.47524 * 59.99693 * 13 12 10 40 40 H 1.08994 * 109.47277 * 299.99516 * 14 13 12 41 41 H 1.08998 * 109.47356 * 59.99825 * 14 13 12 42 42 H 0.97006 * 119.99433 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8792 -0.0046 5 6 4.5307 2.0245 -0.0106 6 6 3.9353 -0.4007 0.0022 7 6 5.3574 -0.8995 0.0049 8 1 6.0288 -0.0817 0.2666 9 6 5.7151 -1.4280 -1.3856 10 7 5.4953 -1.9806 0.9900 11 6 5.0697 -1.5351 2.3235 12 6 6.8716 -2.4930 1.0201 13 6 6.9226 -3.7685 1.8635 14 6 8.3563 -4.3019 1.8953 15 6 8.4066 -5.5579 2.7266 16 1 7.5060 -5.9380 3.1859 17 6 9.6022 -6.2225 2.8999 18 7 9.6459 -7.3189 3.6249 19 14 11.1597 -5.5655 2.1049 20 1 11.8325 -4.6253 3.0369 21 1 12.0727 -6.6954 1.7969 22 1 10.8120 -4.8536 0.8489 23 16 2.4856 -1.4021 0.0075 24 1 -0.3634 0.0054 1.0276 25 1 -0.3633 0.8873 -0.5186 26 1 -0.3634 -0.8927 -0.5092 27 1 4.7670 2.2951 -1.0397 28 1 4.0906 2.8818 0.4986 29 1 5.4432 1.7248 0.5049 30 1 6.7435 -1.7892 -1.3836 31 1 5.0438 -2.2458 -1.6473 32 1 5.6129 -0.6260 -2.1165 33 1 4.0249 -1.2264 2.2872 34 1 5.1824 -2.3544 3.0336 35 1 5.6863 -0.6936 2.6395 36 1 7.1987 -2.7157 0.0044 37 1 7.5295 -1.7418 1.4572 38 1 6.5956 -3.5458 2.8792 39 1 6.2648 -4.5197 1.4265 40 1 8.6837 -4.5245 0.8798 41 1 9.0139 -3.5506 2.3326 42 1 10.4872 -7.7862 3.7471 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106878872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:30 Heat of formation + Delta-G solvation = 31.598854 kcal Electronic energy + Delta-G solvation = -19949.293645 eV Core-core repulsion = 17055.749536 eV Total energy + Delta-G solvation = -2893.544109 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19138 -38.13524 -34.36975 -33.13005 -31.79633 -30.73832 -29.42214 -28.09015 -26.64584 -25.04818 -23.17595 -22.66523 -20.80656 -19.95238 -18.80218 -17.89969 -16.68458 -15.85835 -15.59376 -15.25181 -14.79807 -14.24963 -14.05180 -13.87679 -13.53765 -13.44843 -13.24086 -12.87967 -12.64469 -12.54242 -12.36509 -12.17151 -11.97840 -11.88260 -11.64235 -11.53199 -11.24417 -11.13088 -10.92281 -10.58682 -9.94474 -9.74722 -9.63087 -9.56030 -9.19867 -9.15688 -8.66264 -8.52616 -8.22502 -6.02957 -4.00574 0.60651 1.28501 1.76094 2.64108 3.30653 3.38131 3.41510 3.89577 3.99617 4.45971 4.59279 4.79591 5.00080 5.09968 5.10766 5.17417 5.18976 5.29174 5.31815 5.41186 5.49020 5.52458 5.59732 5.66638 5.71115 5.77036 5.78376 5.87279 6.05515 6.07072 6.14690 6.23532 6.53355 6.57670 6.90113 7.16390 7.20722 7.36383 7.46655 7.65332 7.81535 8.56411 9.02833 9.59702 11.10687 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.031940 B = 0.003370 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.443866 B = 8307.129394 C = 8730.708468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.022 3.978 3 N -0.474 5.474 4 C 0.057 3.943 5 C -0.077 4.077 6 C -0.208 4.208 7 C 0.154 3.846 8 H 0.060 0.940 9 C -0.144 4.144 10 N -0.536 5.536 11 C 0.022 3.978 12 C 0.050 3.950 13 C -0.096 4.096 14 C -0.013 4.013 15 C -0.518 4.518 16 H 0.072 0.928 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.880 3.120 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.266 1.266 23 S 0.167 5.833 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.022 0.978 36 H 0.076 0.924 37 H 0.030 0.970 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.015 0.985 41 H 0.008 0.992 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.070 17.491 -9.659 25.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.255 4.255 3 N -0.190 5.190 4 C -0.075 4.075 5 C -0.137 4.137 6 C -0.330 4.330 7 C 0.044 3.956 8 H 0.077 0.923 9 C -0.202 4.202 10 N -0.261 5.261 11 C -0.127 4.127 12 C -0.077 4.077 13 C -0.134 4.134 14 C -0.051 4.051 15 C -0.556 4.556 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.708 3.292 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.190 1.190 23 S 0.424 5.576 24 H 0.102 0.898 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.041 0.959 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.033 0.967 41 H 0.027 0.973 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.765 16.387 -9.733 24.734 hybrid contribution 2.009 1.598 0.003 2.567 sum -13.755 17.984 -9.730 24.644 Atomic orbital electron populations 1.20391 0.85456 1.03920 1.03728 1.27015 1.01780 0.92322 1.04391 1.66135 1.04259 1.32081 1.16506 1.20092 0.90290 0.93875 1.03291 1.20349 0.95852 0.94728 1.02729 1.25653 0.99784 0.95528 1.11999 1.20009 0.88334 0.93005 0.94260 0.92253 1.21938 1.02671 1.01434 0.94169 1.62153 1.25232 1.32380 1.06285 1.22449 0.99855 0.99822 0.90538 1.22430 0.86165 0.97610 1.01497 1.21472 0.99590 0.94231 0.98133 1.19548 0.92210 0.96415 0.96887 1.21146 0.96223 1.07569 1.30651 0.91034 1.25045 0.98987 0.94706 0.94860 1.69923 1.26571 1.17911 1.39988 0.86769 0.83358 0.78599 0.80489 1.20398 1.21425 1.19025 1.84220 0.95961 1.10397 1.67049 0.89788 0.89618 0.90205 0.90815 0.90790 0.90919 0.91162 0.91475 0.92204 0.92190 0.90152 0.95915 0.90576 0.95206 0.92822 0.91930 0.96662 0.97348 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.46 36.00 0.38 -0.17 16 2 C 0.02 0.24 7.39 -13.46 -0.10 0.15 16 3 N -0.47 -6.03 10.53 -8.06 -0.08 -6.11 16 4 C 0.06 0.69 6.74 -84.22 -0.57 0.12 16 5 C -0.08 -0.74 10.02 36.01 0.36 -0.38 16 6 C -0.21 -2.53 3.95 -35.92 -0.14 -2.67 16 7 C 0.15 1.89 2.38 -68.86 -0.16 1.73 16 8 H 0.06 0.70 6.41 -51.93 -0.33 0.37 16 9 C -0.14 -1.62 8.97 37.16 0.33 -1.29 16 10 N -0.54 -7.64 4.53 -236.29 -1.07 -8.71 16 11 C 0.02 0.30 9.06 60.06 0.54 0.84 16 12 C 0.05 0.79 4.77 -3.83 -0.02 0.78 16 13 C -0.10 -1.90 5.08 -26.73 -0.14 -2.04 16 14 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 15 C -0.52 -14.88 9.66 -34.43 -0.33 -15.21 16 16 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 17 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 19 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 23 S 0.17 1.90 22.38 -107.50 -2.41 -0.50 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.65 6.61 -51.93 -0.34 0.30 16 30 H 0.07 0.79 6.20 -51.93 -0.32 0.47 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.79 6.37 -51.93 -0.33 0.46 16 34 H 0.08 1.18 6.30 -51.93 -0.33 0.85 16 35 H 0.02 0.30 8.14 -51.92 -0.42 -0.12 16 36 H 0.08 1.17 5.83 -51.93 -0.30 0.87 16 37 H 0.03 0.47 8.12 -51.92 -0.42 0.05 16 38 H 0.05 1.07 6.47 -51.93 -0.34 0.73 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 41 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -31.89 344.26 -9.20 -41.09 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -6.87 Total: -3.98 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -0.06 Total: -16.74 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: -0.38 Total: -42.19 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.41 Total: -0.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.89 -9.20 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106878872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.690 kcal (2) G-P(sol) polarization free energy of solvation -31.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds