Wall clock time and date at job start Tue Mar 31 2020 07:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 N 1.46896 * 109.47114 * 179.97438 * 4 3 2 6 6 C 1.46956 * 111.00264 * 293.80085 * 5 4 3 7 7 C 1.53048 * 109.36563 * 176.81245 * 6 5 4 8 8 N 1.46963 * 109.36781 * 58.39854 * 7 6 5 9 9 C 1.46896 * 110.99868 * 176.81328 * 8 7 6 10 10 C 1.53005 * 109.46888 * 293.79536 * 9 8 7 11 11 C 1.53006 * 109.46696 * 180.02562 * 10 9 8 12 12 S 1.81001 * 109.46845 * 180.02562 * 11 10 9 13 13 C 1.76197 * 99.99764 * 180.02562 * 12 11 10 14 14 H 1.07996 * 120.00306 * 359.97438 * 13 12 11 15 15 C 1.38806 * 119.99929 * 180.02562 * 13 12 11 16 16 N 1.31630 * 119.99909 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99738 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47151 * 90.00432 * 17 15 13 19 19 H 1.48504 * 109.46739 * 209.99984 * 17 15 13 20 20 H 1.48493 * 109.47493 * 329.99978 * 17 15 13 21 21 C 1.46957 * 110.87713 * 300.68055 * 8 7 6 22 22 C 1.46963 * 111.00169 * 169.99835 * 5 4 3 23 23 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 24 24 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 25 25 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 26 26 H 1.09001 * 109.47289 * 300.00032 * 4 3 2 27 27 H 1.09004 * 109.47261 * 59.99776 * 4 3 2 28 28 H 1.09006 * 109.48298 * 296.77713 * 6 5 4 29 29 H 1.09000 * 109.49028 * 56.84339 * 6 5 4 30 30 H 1.08998 * 109.49036 * 298.43023 * 7 6 5 31 31 H 1.09001 * 109.49100 * 178.36836 * 7 6 5 32 32 H 1.08997 * 109.47364 * 53.79771 * 9 8 7 33 33 H 1.09005 * 109.46879 * 173.79995 * 9 8 7 34 34 H 1.08997 * 109.47309 * 300.00268 * 10 9 8 35 35 H 1.08995 * 109.46860 * 60.01065 * 10 9 8 36 36 H 1.08997 * 109.47187 * 300.00008 * 11 10 9 37 37 H 1.08992 * 109.47487 * 60.00341 * 11 10 9 38 38 H 0.96998 * 119.99758 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.48761 * 299.34899 * 21 8 7 40 40 H 1.09000 * 109.48710 * 179.28489 * 21 8 7 41 41 H 1.09002 * 109.48412 * 303.15760 * 22 5 4 42 42 H 1.08998 * 109.48746 * 63.21928 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 7 4.6256 -1.4177 -0.2576 6 6 5.1514 -0.6492 -1.3945 7 6 6.6792 -0.6059 -1.3146 8 7 7.2066 -1.9776 -1.3208 9 6 8.6756 -1.9768 -1.3214 10 6 9.1847 -1.3886 -2.6389 11 6 10.7148 -1.3883 -2.6397 12 16 11.3171 -0.6919 -4.1980 13 6 13.0552 -0.8106 -3.9345 14 1 13.4345 -1.2231 -3.0113 15 6 13.9370 -0.3729 -4.9131 16 7 15.2355 -0.4611 -4.7160 17 14 13.2809 0.3413 -6.5096 18 1 13.1072 1.8086 -6.3610 19 1 14.2423 0.0654 -7.6072 20 1 11.9718 -0.2822 -6.8298 21 6 6.6808 -2.7461 -0.1839 22 6 5.1530 -2.7894 -0.2638 23 1 -1.0498 -0.0004 0.0001 24 1 3.0090 0.6649 -0.7843 25 1 3.0092 0.3479 0.9672 26 1 2.7936 -2.0829 0.5272 27 1 2.7934 -1.7658 -1.2243 28 1 4.8494 -1.1265 -2.3268 29 1 4.7566 0.3662 -1.3607 30 1 6.9812 -0.1044 -0.3952 31 1 7.0729 -0.0610 -2.1726 32 1 9.0389 -1.3733 -0.4896 33 1 9.0395 -2.9987 -1.2150 34 1 8.8214 -1.9921 -3.4707 35 1 8.8209 -0.3667 -2.7452 36 1 11.0784 -0.7851 -1.8079 37 1 11.0784 -2.4103 -2.5335 38 1 15.8516 -0.1549 -5.3997 39 1 6.9828 -2.2689 0.7484 40 1 7.0756 -3.7615 -0.2176 41 1 4.7593 -3.3343 0.5942 42 1 4.8510 -3.2910 -1.1832 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119802064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:15 Heat of formation + Delta-G solvation = 49.011351 kcal Electronic energy + Delta-G solvation = -19106.686256 eV Core-core repulsion = 16213.897209 eV Total energy + Delta-G solvation = -2892.789047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.65194 -36.83670 -34.52719 -32.74791 -32.42323 -31.14520 -30.17427 -27.18291 -25.69546 -24.34459 -23.97712 -22.37803 -20.87441 -19.94708 -18.45863 -17.46600 -16.58577 -15.86307 -15.32526 -15.14237 -14.98763 -14.90006 -14.76190 -14.55617 -14.01237 -13.78154 -13.35608 -12.90937 -12.81740 -12.52502 -12.18293 -12.06518 -11.69066 -11.62966 -11.44518 -11.24406 -11.08035 -11.03549 -10.92207 -10.53148 -10.38561 -10.31098 -10.09128 -9.75426 -8.99464 -8.70417 -8.54684 -8.37205 -6.92717 -6.27294 -3.99296 2.42623 2.49826 3.01650 3.30845 3.46543 3.49221 3.55873 3.86378 4.15655 4.32767 4.58414 4.64995 4.78605 4.82447 4.88413 5.03388 5.10469 5.11502 5.17640 5.20284 5.29185 5.31011 5.48719 5.51346 5.57037 5.61275 5.63473 5.66698 5.72251 5.76785 5.81464 5.91723 5.99963 6.25189 6.49618 6.62729 6.68661 6.69847 7.01628 7.03950 7.26652 7.96509 8.45463 9.18669 10.82190 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.035976 B = 0.002511 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.116328 B =11150.275256 C =11722.566406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.184 4.184 3 C -0.012 4.012 4 C 0.062 3.938 5 N -0.541 5.541 6 C 0.053 3.947 7 C 0.053 3.947 8 N -0.540 5.540 9 C 0.061 3.939 10 C -0.097 4.097 11 C -0.082 4.082 12 S -0.216 6.216 13 C -0.502 4.502 14 H 0.088 0.912 15 C 0.091 3.909 16 N -0.882 5.882 17 Si 0.862 3.138 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.238 1.238 21 C 0.057 3.943 22 C 0.059 3.941 23 H 0.216 0.784 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.270 0.730 39 H 0.042 0.958 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.865 -2.064 10.173 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.184 4.184 3 C -0.049 4.049 4 C -0.066 4.066 5 N -0.266 5.266 6 C -0.075 4.075 7 C -0.075 4.075 8 N -0.265 5.265 9 C -0.068 4.068 10 C -0.135 4.135 11 C -0.231 4.231 12 S 0.012 5.988 13 C -0.649 4.649 14 H 0.106 0.894 15 C -0.117 4.117 16 N -0.519 5.519 17 Si 0.687 3.313 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.161 1.161 21 C -0.071 4.071 22 C -0.069 4.069 23 H 0.233 0.767 24 H 0.106 0.894 25 H 0.114 0.886 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -26.216 -1.647 9.204 27.834 hybrid contribution 0.556 -0.102 0.348 0.664 sum -25.660 -1.749 9.551 27.436 Atomic orbital electron populations 1.24911 0.95982 1.00514 1.01497 1.23088 0.94495 1.00653 1.00188 1.18720 0.84225 0.97866 1.04048 1.21981 0.87382 0.96240 1.00989 1.62140 1.06744 1.14195 1.43558 1.22264 0.94956 0.98446 0.91819 1.22224 0.93707 0.89922 1.01655 1.62155 1.08272 1.13609 1.42477 1.22146 0.85813 1.01265 0.97589 1.21334 0.93703 1.01478 0.97014 1.23015 0.96706 1.03032 1.00344 1.84148 1.08826 1.82892 1.22930 1.22132 0.87071 1.48173 1.07565 0.89444 1.24806 0.94185 0.94380 0.98357 1.69941 1.01269 1.45673 1.35017 0.86662 0.80898 0.80659 0.83075 1.19403 1.20139 1.16149 1.22136 0.93925 0.98713 0.92367 1.22145 0.94797 0.88881 1.01041 0.76676 0.89394 0.88642 0.90400 0.94311 0.93728 0.90104 0.93956 0.89501 0.94670 0.90678 0.90743 0.91611 0.91633 0.91388 0.92006 0.94022 0.90199 0.90366 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.58 19.25 29.55 0.57 -1.01 16 2 C -0.18 -1.55 13.34 -37.12 -0.50 -2.04 16 3 C -0.01 -0.09 5.64 -29.52 -0.17 -0.25 16 4 C 0.06 0.48 4.91 -3.83 -0.02 0.46 16 5 N -0.54 -4.82 4.71 -234.46 -1.10 -5.93 16 6 C 0.05 0.49 5.41 -3.77 -0.02 0.47 16 7 C 0.05 0.58 5.41 -3.76 -0.02 0.56 16 8 N -0.54 -6.31 4.71 -234.46 -1.10 -7.41 16 9 C 0.06 0.78 4.96 -3.82 -0.02 0.76 16 10 C -0.10 -1.49 5.15 -26.73 -0.14 -1.62 16 11 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 12 S -0.22 -5.29 19.41 -107.50 -2.09 -7.37 16 13 C -0.50 -14.65 10.04 30.94 0.31 -14.34 16 14 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 15 C 0.09 2.67 5.50 -17.43 -0.10 2.58 16 16 N -0.88 -26.88 13.97 55.49 0.78 -26.11 16 17 Si 0.86 21.66 27.74 -169.99 -4.71 16.95 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 21 C 0.06 0.56 5.61 -3.77 -0.02 0.54 16 22 C 0.06 0.52 5.61 -3.76 -0.02 0.50 16 23 H 0.22 0.89 7.80 -54.10 -0.42 0.46 16 24 H 0.09 0.60 6.49 -51.93 -0.34 0.27 16 25 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.57 8.03 -51.93 -0.42 0.15 16 27 H 0.04 0.32 8.12 -51.93 -0.42 -0.11 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.64 6.34 -51.93 -0.33 0.31 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.98 6.34 -51.93 -0.33 0.65 16 32 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.00 6.49 -51.93 -0.34 0.67 16 36 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 37 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 38 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 41 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 42 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -31.45 351.37 -10.09 -41.55 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.23 Total: -2.20 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 0.07 Total: -14.78 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: -1.43 Total: -39.44 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -2.09 Total: -7.37 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.45 -10.09 -41.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119802064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.558 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds