Wall clock time and date at job start Tue Mar 31 2020 06:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31785 * 122.74988 * 2 1 4 4 C 1.29029 * 117.12493 * 180.22177 * 3 2 1 5 5 C 1.50697 * 124.91440 * 179.81653 * 4 3 2 6 6 C 1.52997 * 109.47466 * 59.69958 * 5 4 3 7 7 C 1.53006 * 109.47239 * 299.69669 * 5 4 3 8 8 S 1.70978 * 110.16584 * 359.55310 * 4 3 2 9 9 C 1.33640 * 122.75104 * 179.73221 * 2 1 3 10 10 C 1.50699 * 126.03804 * 0.03902 * 9 2 1 11 11 H 1.09002 * 109.46855 * 344.98199 * 10 9 2 12 12 C 1.52998 * 109.46936 * 104.98120 * 10 9 2 13 13 N 1.46893 * 109.47445 * 224.98224 * 10 9 2 14 14 C 1.46900 * 111.00042 * 56.04458 * 13 10 9 15 15 C 1.46896 * 111.00167 * 180.02562 * 13 10 9 16 16 C 1.50704 * 109.46883 * 170.00073 * 15 13 10 17 17 H 1.07994 * 120.00665 * 359.97438 * 16 15 13 18 18 C 1.37885 * 119.99725 * 179.97438 * 16 15 13 19 19 N 1.31512 * 119.99570 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00043 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47501 * 89.99681 * 20 18 16 22 22 H 1.48503 * 109.47147 * 209.99901 * 20 18 16 23 23 H 1.48501 * 109.47188 * 329.99762 * 20 18 16 24 24 H 1.09005 * 109.46811 * 270.26538 * 1 2 3 25 25 H 1.08999 * 109.47173 * 30.26686 * 1 2 3 26 26 H 1.08996 * 109.47220 * 150.26593 * 1 2 3 27 27 H 1.08998 * 109.46862 * 179.70513 * 5 4 3 28 28 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 29 29 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 30 30 H 1.09004 * 109.47261 * 179.97438 * 6 5 4 31 31 H 1.08993 * 109.46955 * 180.02562 * 7 5 4 32 32 H 1.09000 * 109.47050 * 300.00336 * 7 5 4 33 33 H 1.09001 * 109.47002 * 60.00070 * 7 5 4 34 34 H 1.09004 * 109.47494 * 299.99713 * 12 10 9 35 35 H 1.08993 * 109.47224 * 60.00279 * 12 10 9 36 36 H 1.09001 * 109.46877 * 180.02562 * 12 10 9 37 37 H 1.08995 * 109.47094 * 60.00054 * 14 13 10 38 38 H 1.08999 * 109.47216 * 180.02562 * 14 13 10 39 39 H 1.09005 * 109.46854 * 300.00325 * 14 13 10 40 40 H 1.08995 * 109.47314 * 289.99572 * 15 13 10 41 41 H 1.09000 * 109.47379 * 50.00176 * 15 13 10 42 42 H 0.97002 * 119.99549 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5040 0.9819 -0.0044 5 6 4.4835 2.1271 -0.0092 6 6 4.2664 2.9892 1.2360 7 6 4.2674 2.9779 -1.2624 8 16 3.9333 -0.6731 0.0032 9 6 2.2300 -1.1239 0.0053 10 6 1.6848 -2.5288 0.0110 11 1 0.6278 -2.5072 0.2766 12 6 1.8487 -3.1451 -1.3797 13 7 2.4202 -3.3356 0.9939 14 6 2.3633 -2.7216 2.3272 15 6 1.9151 -4.7146 1.0267 16 6 2.8403 -5.5687 1.8547 17 1 3.7161 -5.1311 2.3106 18 6 2.5686 -6.9091 2.0304 19 7 3.3763 -7.6546 2.7525 20 14 1.0542 -7.6662 1.2414 21 1 1.4000 -8.1683 -0.1126 22 1 0.5709 -8.7934 2.0788 23 1 -0.0124 -6.6389 1.1309 24 1 -0.3633 0.0048 1.0277 25 1 -0.3633 0.8876 -0.5180 26 1 -0.3633 -0.8923 -0.5097 27 1 5.5006 1.7353 -0.0071 28 1 4.4203 2.3831 2.1289 29 1 3.2492 3.3810 1.2338 30 1 4.9752 3.8173 1.2328 31 1 4.9761 3.8059 -1.2661 32 1 4.4221 2.3637 -2.1496 33 1 3.2502 3.3697 -1.2647 34 1 1.3029 -2.5466 -2.1091 35 1 2.9055 -3.1667 -1.6453 36 1 1.4539 -4.1611 -1.3757 37 1 1.3242 -2.6430 2.6469 38 1 2.9160 -3.3389 3.0354 39 1 2.8077 -1.7270 2.2885 40 1 0.9184 -4.7260 1.4676 41 1 1.8681 -5.1086 0.0116 42 1 3.1853 -8.5976 2.8757 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121092807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:31 Heat of formation + Delta-G solvation = 14.727649 kcal Electronic energy + Delta-G solvation = -20448.204692 eV Core-core repulsion = 17553.928992 eV Total energy + Delta-G solvation = -2894.275700 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10403 -38.98857 -36.49683 -34.81190 -33.07373 -31.32779 -30.12999 -28.10482 -28.03098 -26.18123 -26.02140 -24.01812 -21.96644 -21.46065 -19.52729 -18.88722 -18.72052 -16.83469 -16.60202 -16.34380 -15.84730 -15.56578 -15.49304 -14.86389 -14.60683 -14.47341 -14.29275 -14.16633 -13.64840 -13.39501 -13.31067 -13.16349 -13.06341 -12.84844 -12.75380 -12.56290 -12.45768 -12.34940 -12.07663 -12.03281 -11.92637 -11.88900 -11.79609 -11.44572 -10.76155 -10.45382 -10.05477 -9.50337 -9.11754 -8.27497 -6.30651 -0.20903 0.46449 0.95124 1.35367 1.36700 1.46892 1.81373 2.34723 3.04815 3.08086 3.16513 3.75383 3.86430 4.06622 4.15635 4.17854 4.28078 4.33358 4.38461 4.51375 4.57174 4.71570 4.75043 4.79496 4.82490 4.83155 4.85766 4.95784 4.97225 5.02420 5.03879 5.09841 5.11113 5.20742 5.30498 5.34617 5.47240 5.55107 5.95410 6.26104 6.60388 6.75207 6.82139 7.32358 8.89157 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.029255 B = 0.004319 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.865630 B = 6482.168892 C = 6862.138635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.052 3.948 3 N -0.483 5.483 4 C 0.042 3.958 5 C -0.019 4.019 6 C -0.134 4.134 7 C -0.132 4.132 8 S 0.139 5.861 9 C -0.217 4.217 10 C 0.152 3.848 11 H 0.061 0.939 12 C -0.139 4.139 13 N -0.537 5.537 14 C 0.047 3.953 15 C 0.170 3.830 16 C -0.515 4.515 17 H 0.037 0.963 18 C 0.009 3.991 19 N -0.948 5.948 20 Si 0.944 3.056 21 H -0.263 1.263 22 H -0.284 1.284 23 H -0.249 1.249 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.018 0.982 38 H 0.052 0.948 39 H 0.060 0.940 40 H -0.012 1.012 41 H 0.042 0.958 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.736 20.647 -8.836 22.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 N -0.198 5.198 4 C -0.236 4.236 5 C -0.041 4.041 6 C -0.193 4.193 7 C -0.191 4.191 8 S 0.397 5.603 9 C -0.338 4.338 10 C 0.042 3.958 11 H 0.078 0.922 12 C -0.196 4.196 13 N -0.261 5.261 14 C -0.102 4.102 15 C 0.044 3.956 16 C -0.553 4.553 17 H 0.055 0.945 18 C -0.188 4.188 19 N -0.589 5.589 20 Si 0.767 3.233 21 H -0.188 1.188 22 H -0.209 1.209 23 H -0.173 1.173 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.119 0.881 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.006 0.994 41 H 0.060 0.940 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.469 20.421 -8.917 22.331 hybrid contribution -1.984 -0.996 0.484 2.272 sum -3.453 19.425 -8.433 21.457 Atomic orbital electron populations 1.20394 0.85976 1.03848 1.03189 1.20472 0.99046 0.85894 1.02646 1.66102 1.05090 1.31339 1.17241 1.27566 0.94675 0.98834 1.02570 1.20013 0.94974 0.90592 0.98506 1.21763 1.02794 0.99507 0.95226 1.21751 1.02788 0.99535 0.95016 1.84337 1.07243 1.01201 1.67489 1.25569 0.95647 0.99498 1.13120 1.20031 0.95112 0.86411 0.94284 0.92181 1.21899 1.02581 1.00951 0.94198 1.61967 1.55155 1.02408 1.06601 1.22113 0.98949 0.98476 0.90654 1.20026 0.92981 0.85903 0.96728 1.21230 1.09463 0.93880 1.30747 0.94503 1.25817 0.99870 0.97529 0.95585 1.70051 1.39799 1.07284 1.41781 0.85761 0.79989 0.78534 0.78982 1.18764 1.20946 1.17275 0.90651 0.89857 0.90025 0.88145 0.93410 0.92716 0.89346 0.89421 0.92960 0.92715 0.90149 0.92628 0.91899 0.96305 0.92923 0.92091 0.99389 0.94049 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.67 9.81 71.24 0.70 -0.97 16 2 C 0.05 1.46 6.74 41.52 0.28 1.74 16 3 N -0.48 -13.53 10.51 -179.40 -1.89 -15.42 16 4 C 0.04 1.06 5.91 88.52 0.52 1.58 16 5 C -0.02 -0.35 3.35 -11.54 -0.04 -0.39 16 6 C -0.13 -2.25 9.17 71.98 0.66 -1.59 16 7 C -0.13 -2.06 9.17 71.98 0.66 -1.40 16 8 S 0.14 4.03 22.37 -56.49 -1.26 2.76 16 9 C -0.22 -6.62 3.95 24.64 0.10 -6.53 16 10 C 0.15 5.02 2.24 44.17 0.10 5.12 16 11 H 0.06 1.90 6.77 -2.39 -0.02 1.88 16 12 C -0.14 -4.16 8.97 71.98 0.65 -3.52 16 13 N -0.54 -22.12 4.52 -906.07 -4.09 -26.21 16 14 C 0.05 1.87 9.07 127.69 1.16 3.03 16 15 C 0.17 8.00 3.60 85.56 0.31 8.31 16 16 C -0.51 -29.60 9.01 25.60 0.23 -29.37 16 17 H 0.04 2.38 7.37 -2.91 -0.02 2.36 16 18 C 0.01 0.53 5.47 84.66 0.46 1.00 16 19 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 20 Si 0.94 43.35 27.47 68.60 1.88 45.23 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 24 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 1.66 7.03 -2.39 -0.02 1.64 16 27 H 0.10 1.59 8.12 -2.39 -0.02 1.57 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 1.95 6.20 -2.39 -0.01 1.94 16 37 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.05 2.39 6.76 -2.39 -0.02 2.38 16 39 H 0.06 2.23 6.37 -2.38 -0.02 2.21 16 40 H -0.01 -0.54 7.18 -2.39 -0.02 -0.56 16 41 H 0.04 1.88 5.26 -2.39 -0.01 1.86 16 42 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -66.86 344.98 1.65 -65.20 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.93 Total: 10.32 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 5.78 Total: -22.98 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -5.68 Total: -100.54 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.88 Total: 45.23 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.26 Total: 2.76 kcal Total: -66.86 1.65 -65.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121092807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.931 kcal (2) G-P(sol) polarization free energy of solvation -66.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds