Wall clock time and date at job start Tue Mar 31 2020 06:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31777 * 122.74759 * 2 1 4 4 C 1.29032 * 117.12314 * 180.33397 * 3 2 1 5 5 C 1.50701 * 124.91815 * 179.68149 * 4 3 2 6 6 C 1.52995 * 109.46726 * 300.04066 * 5 4 3 7 7 C 1.53006 * 109.47141 * 60.04039 * 5 4 3 8 8 S 1.70975 * 110.16530 * 359.71354 * 4 3 2 9 9 C 1.33633 * 122.74744 * 179.79483 * 2 1 3 10 10 C 1.50703 * 126.04073 * 359.97438 * 9 2 1 11 11 H 1.08994 * 109.47161 * 14.75653 * 10 9 2 12 12 C 1.52997 * 109.46743 * 254.75779 * 10 9 2 13 13 N 1.46899 * 109.47267 * 134.76117 * 10 9 2 14 14 C 1.46898 * 111.00071 * 177.61580 * 13 10 9 15 15 C 1.46898 * 110.99803 * 301.57071 * 13 10 9 16 16 C 1.50705 * 109.47094 * 170.00450 * 15 13 10 17 17 H 1.07997 * 119.99987 * 359.97438 * 16 15 13 18 18 C 1.37874 * 120.00106 * 180.02562 * 16 15 13 19 19 N 1.31516 * 120.00071 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00109 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46854 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47088 * 119.99671 * 20 18 16 23 23 H 1.48504 * 109.46811 * 239.99525 * 20 18 16 24 24 H 1.08996 * 109.47352 * 270.20091 * 1 2 3 25 25 H 1.09001 * 109.47210 * 30.20249 * 1 2 3 26 26 H 1.09002 * 109.47103 * 150.20258 * 1 2 3 27 27 H 1.08998 * 109.47021 * 180.02562 * 5 4 3 28 28 H 1.08998 * 109.47704 * 60.00010 * 6 5 4 29 29 H 1.09008 * 109.46935 * 180.02562 * 6 5 4 30 30 H 1.09000 * 109.47165 * 299.99742 * 6 5 4 31 31 H 1.09006 * 109.46597 * 299.99831 * 7 5 4 32 32 H 1.08998 * 109.46993 * 59.99657 * 7 5 4 33 33 H 1.08994 * 109.47090 * 180.02562 * 7 5 4 34 34 H 1.09008 * 109.47125 * 60.00153 * 12 10 9 35 35 H 1.09007 * 109.47000 * 179.97438 * 12 10 9 36 36 H 1.08993 * 109.47927 * 299.99950 * 12 10 9 37 37 H 1.09002 * 109.47369 * 176.97354 * 14 13 10 38 38 H 1.08996 * 109.47228 * 296.98237 * 14 13 10 39 39 H 1.09007 * 109.47072 * 56.97911 * 14 13 10 40 40 H 1.09003 * 109.47510 * 50.00102 * 15 13 10 41 41 H 1.09005 * 109.47394 * 289.99671 * 15 13 10 42 42 H 0.97004 * 120.00111 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9819 -0.0067 5 6 4.4835 2.1271 -0.0148 6 6 4.2594 2.9810 -1.2643 7 6 4.2744 2.9859 1.2342 8 16 3.9333 -0.6731 -0.0060 9 6 2.2299 -1.1239 0.0040 10 6 1.6847 -2.5288 0.0096 11 1 0.6267 -2.5090 -0.2518 12 6 1.8542 -3.1361 1.4036 13 7 2.4163 -3.3420 -0.9710 14 6 1.9491 -4.7346 -0.9534 15 6 2.3066 -2.7669 -2.3182 16 6 3.2588 -3.4763 -3.2463 17 1 3.8833 -4.2742 -2.8725 18 6 3.3336 -3.1059 -4.5722 19 7 2.5736 -2.1339 -5.0273 20 14 4.5144 -3.9848 -5.7224 21 1 5.2510 -5.0319 -4.9698 22 1 3.7505 -4.6148 -6.8291 23 1 5.4806 -3.0059 -6.2823 24 1 -0.3634 0.0036 1.0276 25 1 -0.3634 0.8882 -0.5170 26 1 -0.3633 -0.8918 -0.5107 27 1 5.5006 1.7352 -0.0198 28 1 3.2423 3.3729 -1.2590 29 1 4.9682 3.8091 -1.2704 30 1 4.4084 2.3692 -2.1540 31 1 3.2572 3.3778 1.2394 32 1 4.4340 2.3775 2.1243 33 1 4.9825 3.8144 1.2281 34 1 1.3113 -2.5327 2.1313 35 1 1.4594 -4.1521 1.4078 36 1 2.9121 -3.1560 1.6652 37 1 2.4691 -5.3021 -1.7252 38 1 2.1551 -5.1746 0.0223 39 1 0.8762 -4.7603 -1.1443 40 1 2.5567 -1.7065 -2.2822 41 1 1.2865 -2.8874 -2.6829 42 1 2.6259 -1.8735 -5.9603 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121092976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:38 Heat of formation + Delta-G solvation = 29.269953 kcal Electronic energy + Delta-G solvation = -20767.581920 eV Core-core repulsion = 17873.936822 eV Total energy + Delta-G solvation = -2893.645098 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.66332 -37.30945 -35.27260 -32.88513 -31.39459 -29.93638 -27.71991 -27.06233 -26.31644 -25.17139 -24.53662 -22.08190 -20.76782 -20.04287 -17.95544 -17.35994 -16.35772 -15.44761 -15.09459 -14.73915 -14.41953 -14.17632 -13.71658 -13.46944 -13.10438 -13.05717 -12.84559 -12.25637 -12.16909 -11.97420 -11.95513 -11.86282 -11.76964 -11.42973 -11.16683 -11.08099 -11.02046 -10.87142 -10.80788 -10.64303 -10.51430 -10.40515 -9.87716 -9.20419 -9.03379 -8.60200 -8.35402 -8.06211 -7.32021 -6.01585 -4.02929 1.24674 1.91917 2.39452 3.24762 3.30370 3.37907 3.42360 4.37843 4.41892 4.86383 4.98627 5.13091 5.20091 5.20921 5.33952 5.56584 5.59056 5.66758 5.68980 5.70351 5.85448 5.86673 5.94165 5.95362 5.99433 6.09372 6.10872 6.19656 6.24934 6.28886 6.35865 6.42343 6.47545 6.72033 6.74756 7.29569 7.32799 7.78348 8.06635 8.15793 8.26081 8.51758 9.04375 9.60791 11.09157 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.006452 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.772599 B = 4338.611667 C = 5421.080889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.048 3.952 3 N -0.468 5.468 4 C 0.021 3.979 5 C -0.012 4.012 6 C -0.139 4.139 7 C -0.136 4.136 8 S 0.174 5.826 9 C -0.188 4.188 10 C 0.151 3.849 11 H 0.051 0.949 12 C -0.139 4.139 13 N -0.536 5.536 14 C 0.036 3.964 15 C 0.192 3.808 16 C -0.505 4.505 17 H 0.063 0.937 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.011 0.989 40 H 0.034 0.966 41 H -0.012 1.012 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.504 5.506 12.783 13.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 N -0.182 5.182 4 C -0.257 4.257 5 C -0.034 4.034 6 C -0.198 4.198 7 C -0.195 4.195 8 S 0.432 5.568 9 C -0.310 4.310 10 C 0.040 3.960 11 H 0.069 0.931 12 C -0.197 4.197 13 N -0.261 5.261 14 C -0.113 4.113 15 C 0.067 3.933 16 C -0.543 4.543 17 H 0.082 0.918 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.723 3.277 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.052 0.948 41 H 0.005 0.995 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.720 5.573 12.747 14.018 hybrid contribution -1.219 -0.432 -1.199 1.763 sum 0.502 5.141 11.549 12.651 Atomic orbital electron populations 1.20271 0.87948 1.03038 1.01875 1.19965 0.97706 0.86337 1.04475 1.65951 1.04624 1.31519 1.16143 1.26836 0.94490 0.98833 1.05512 1.19705 0.95097 0.91342 0.97213 1.21786 1.02496 0.99064 0.96464 1.21772 1.02617 0.98981 0.96113 1.84025 1.07010 0.99629 1.66102 1.25553 0.95431 0.99672 1.10366 1.19980 0.95233 0.86802 0.94002 0.93142 1.21893 1.02407 1.00388 0.95027 1.62282 1.53614 1.01449 1.08785 1.22259 0.97234 0.90725 1.01045 1.19775 0.95521 0.95946 0.82059 1.21155 1.21712 1.18385 0.93080 0.91837 1.24975 0.96059 0.95279 0.98212 1.69982 1.39533 1.28839 1.15221 0.86491 0.80901 0.79610 0.80734 1.19636 1.21146 1.21028 0.91484 0.91076 0.91046 0.89762 0.91676 0.92190 0.92205 0.91684 0.92814 0.92146 0.92803 0.91992 0.91951 0.90356 0.93158 0.97027 0.94787 0.99456 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.02 36.01 0.36 -0.74 16 2 C 0.05 0.88 6.74 -84.23 -0.57 0.31 16 3 N -0.47 -8.54 10.51 -8.06 -0.08 -8.63 16 4 C 0.02 0.35 5.91 -13.45 -0.08 0.27 16 5 C -0.01 -0.15 3.35 -91.77 -0.31 -0.46 16 6 C -0.14 -1.84 9.17 37.15 0.34 -1.50 16 7 C -0.14 -1.53 9.17 37.16 0.34 -1.19 16 8 S 0.17 3.13 22.74 -107.50 -2.44 0.69 16 9 C -0.19 -3.54 3.81 -35.92 -0.14 -3.67 16 10 C 0.15 2.74 2.38 -68.87 -0.16 2.58 16 11 H 0.05 0.93 6.41 -51.93 -0.33 0.59 16 12 C -0.14 -2.04 8.86 37.16 0.33 -1.71 16 13 N -0.54 -11.42 4.52 -237.73 -1.07 -12.49 16 14 C 0.04 0.68 8.91 60.06 0.54 1.21 16 15 C 0.19 5.01 4.55 -4.97 -0.02 4.99 16 16 C -0.50 -14.13 8.41 -34.44 -0.29 -14.42 16 17 H 0.06 1.76 7.15 -52.49 -0.38 1.38 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 20 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.07 1.09 6.61 -51.93 -0.34 0.75 16 27 H 0.08 1.01 8.12 -51.93 -0.42 0.59 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.06 0.83 6.43 -51.92 -0.33 0.49 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.60 6.70 -51.93 -0.35 1.26 16 38 H 0.05 0.80 6.43 -51.93 -0.33 0.47 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.03 0.97 6.43 -51.93 -0.33 0.63 16 41 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 348.92 15.07 5.26 5.26 Total: -1.00 -31.12 348.92 -9.42 -40.54 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -7.03 Total: -3.07 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 0.24 Total: -12.82 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.42 Total: -47.30 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -2.44 Total: 0.69 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.12 -9.42 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121092976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.811 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds