Wall clock time and date at job start Tue Mar 31 2020 06:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31777 * 122.74759 * 2 1 4 4 C 1.29032 * 117.12314 * 180.33397 * 3 2 1 5 5 C 1.50701 * 124.91815 * 179.68149 * 4 3 2 6 6 C 1.52995 * 109.46726 * 300.04066 * 5 4 3 7 7 C 1.53006 * 109.47141 * 60.04039 * 5 4 3 8 8 S 1.70975 * 110.16530 * 359.71354 * 4 3 2 9 9 C 1.33633 * 122.74744 * 179.79483 * 2 1 3 10 10 C 1.50703 * 126.04073 * 359.97438 * 9 2 1 11 11 H 1.08994 * 109.47161 * 14.75653 * 10 9 2 12 12 C 1.52997 * 109.46743 * 254.75779 * 10 9 2 13 13 N 1.46899 * 109.47267 * 134.76117 * 10 9 2 14 14 C 1.46898 * 111.00071 * 177.61580 * 13 10 9 15 15 C 1.46898 * 110.99803 * 301.57071 * 13 10 9 16 16 C 1.50705 * 109.47094 * 170.00450 * 15 13 10 17 17 H 1.07997 * 119.99987 * 359.97438 * 16 15 13 18 18 C 1.37874 * 120.00106 * 180.02562 * 16 15 13 19 19 N 1.31516 * 120.00071 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00109 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46854 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47088 * 119.99671 * 20 18 16 23 23 H 1.48504 * 109.46811 * 239.99525 * 20 18 16 24 24 H 1.08996 * 109.47352 * 270.20091 * 1 2 3 25 25 H 1.09001 * 109.47210 * 30.20249 * 1 2 3 26 26 H 1.09002 * 109.47103 * 150.20258 * 1 2 3 27 27 H 1.08998 * 109.47021 * 180.02562 * 5 4 3 28 28 H 1.08998 * 109.47704 * 60.00010 * 6 5 4 29 29 H 1.09008 * 109.46935 * 180.02562 * 6 5 4 30 30 H 1.09000 * 109.47165 * 299.99742 * 6 5 4 31 31 H 1.09006 * 109.46597 * 299.99831 * 7 5 4 32 32 H 1.08998 * 109.46993 * 59.99657 * 7 5 4 33 33 H 1.08994 * 109.47090 * 180.02562 * 7 5 4 34 34 H 1.09008 * 109.47125 * 60.00153 * 12 10 9 35 35 H 1.09007 * 109.47000 * 179.97438 * 12 10 9 36 36 H 1.08993 * 109.47927 * 299.99950 * 12 10 9 37 37 H 1.09002 * 109.47369 * 176.97354 * 14 13 10 38 38 H 1.08996 * 109.47228 * 296.98237 * 14 13 10 39 39 H 1.09007 * 109.47072 * 56.97911 * 14 13 10 40 40 H 1.09003 * 109.47510 * 50.00102 * 15 13 10 41 41 H 1.09005 * 109.47394 * 289.99671 * 15 13 10 42 42 H 0.97004 * 120.00111 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9819 -0.0067 5 6 4.4835 2.1271 -0.0148 6 6 4.2594 2.9810 -1.2643 7 6 4.2744 2.9859 1.2342 8 16 3.9333 -0.6731 -0.0060 9 6 2.2299 -1.1239 0.0040 10 6 1.6847 -2.5288 0.0096 11 1 0.6267 -2.5090 -0.2518 12 6 1.8542 -3.1361 1.4036 13 7 2.4163 -3.3420 -0.9710 14 6 1.9491 -4.7346 -0.9534 15 6 2.3066 -2.7669 -2.3182 16 6 3.2588 -3.4763 -3.2463 17 1 3.8833 -4.2742 -2.8725 18 6 3.3336 -3.1059 -4.5722 19 7 2.5736 -2.1339 -5.0273 20 14 4.5144 -3.9848 -5.7224 21 1 5.2510 -5.0319 -4.9698 22 1 3.7505 -4.6148 -6.8291 23 1 5.4806 -3.0059 -6.2823 24 1 -0.3634 0.0036 1.0276 25 1 -0.3634 0.8882 -0.5170 26 1 -0.3633 -0.8918 -0.5107 27 1 5.5006 1.7352 -0.0198 28 1 3.2423 3.3729 -1.2590 29 1 4.9682 3.8091 -1.2704 30 1 4.4084 2.3692 -2.1540 31 1 3.2572 3.3778 1.2394 32 1 4.4340 2.3775 2.1243 33 1 4.9825 3.8144 1.2281 34 1 1.3113 -2.5327 2.1313 35 1 1.4594 -4.1521 1.4078 36 1 2.9121 -3.1560 1.6652 37 1 2.4691 -5.3021 -1.7252 38 1 2.1551 -5.1746 0.0223 39 1 0.8762 -4.7603 -1.1443 40 1 2.5567 -1.7065 -2.2822 41 1 1.2865 -2.8874 -2.6829 42 1 2.6259 -1.8735 -5.9603 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121092976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:38 Heat of formation + Delta-G solvation = 10.094194 kcal Electronic energy + Delta-G solvation = -20768.413443 eV Core-core repulsion = 17873.936822 eV Total energy + Delta-G solvation = -2894.476621 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.03504 -38.87611 -36.46236 -34.91800 -32.92843 -31.33203 -29.37815 -28.04328 -27.96003 -26.72198 -25.88687 -23.90069 -22.09802 -21.50612 -19.35553 -18.74839 -18.47460 -16.84527 -16.71258 -16.38512 -15.81981 -15.59829 -15.12184 -14.93015 -14.55687 -14.32847 -14.15564 -13.94485 -13.49157 -13.44928 -13.26417 -13.25650 -12.93106 -12.88264 -12.77303 -12.51768 -12.41076 -12.33889 -12.13746 -12.10792 -12.03564 -11.91380 -11.71078 -11.25946 -10.64571 -10.43244 -9.94155 -9.43193 -9.06860 -8.20505 -6.30079 -0.13401 0.55113 1.00082 1.38423 1.39289 1.52625 1.86761 2.38752 3.12001 3.14652 3.28803 3.81469 3.87866 4.06035 4.17350 4.23444 4.29929 4.36004 4.50420 4.51617 4.69639 4.71969 4.76496 4.80496 4.82245 4.90217 4.94778 4.97082 5.03410 5.07453 5.08544 5.15385 5.27302 5.29708 5.33949 5.37811 5.48761 5.64518 6.04656 6.29898 6.58418 6.85691 6.87889 7.39266 8.90666 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.006452 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.772599 B = 4338.611667 C = 5421.080889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.035 3.965 3 N -0.485 5.485 4 C 0.030 3.970 5 C -0.017 4.017 6 C -0.135 4.135 7 C -0.128 4.128 8 S 0.147 5.853 9 C -0.210 4.210 10 C 0.149 3.851 11 H 0.048 0.952 12 C -0.129 4.129 13 N -0.541 5.541 14 C 0.037 3.963 15 C 0.215 3.785 16 C -0.516 4.516 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.280 1.280 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.013 0.987 40 H 0.006 0.994 41 H -0.049 1.049 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.452 5.392 13.990 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.097 4.097 3 N -0.200 5.200 4 C -0.247 4.247 5 C -0.039 4.039 6 C -0.194 4.194 7 C -0.187 4.187 8 S 0.406 5.594 9 C -0.331 4.331 10 C 0.039 3.961 11 H 0.065 0.935 12 C -0.187 4.187 13 N -0.266 5.266 14 C -0.111 4.111 15 C 0.088 3.912 16 C -0.555 4.555 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.576 5.576 20 Si 0.790 3.210 21 H -0.184 1.184 22 H -0.205 1.205 23 H -0.206 1.206 24 H 0.113 0.887 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.032 0.968 40 H 0.024 0.976 41 H -0.031 1.031 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.659 5.437 13.982 15.235 hybrid contribution -1.535 -0.333 -1.543 2.202 sum 1.124 5.104 12.438 13.492 Atomic orbital electron populations 1.20326 0.86239 1.02722 1.03541 1.20470 0.99109 0.86351 1.03784 1.66025 1.05186 1.31527 1.17280 1.27543 0.94744 0.99040 1.03424 1.19990 0.94890 0.90586 0.98434 1.21764 1.02735 0.99608 0.95278 1.21724 1.02753 0.99384 0.94790 1.83974 1.07453 1.01178 1.66835 1.25671 0.95601 1.00128 1.11742 1.20122 0.94507 0.86528 0.94975 0.93482 1.21833 1.02673 1.01353 0.92809 1.62194 1.54938 1.02735 1.06719 1.22293 0.97027 0.89244 1.02520 1.19317 0.92855 0.94474 0.84544 1.21466 1.21838 1.18364 0.93802 0.91769 1.25884 0.97739 0.95943 1.00015 1.70120 1.41283 1.30454 1.15703 0.85395 0.78598 0.78583 0.78443 1.18435 1.20495 1.20630 0.88741 0.91055 0.91601 0.88187 0.92929 0.88836 0.94595 0.92862 0.92509 0.89228 0.90826 0.90343 0.92250 0.92252 0.89423 0.96796 0.97591 1.03118 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.09 10.02 71.24 0.71 -1.38 16 2 C 0.04 1.30 6.74 41.52 0.28 1.58 16 3 N -0.49 -17.82 10.51 -179.40 -1.89 -19.71 16 4 C 0.03 1.02 5.91 88.52 0.52 1.55 16 5 C -0.02 -0.43 3.35 -11.54 -0.04 -0.47 16 6 C -0.14 -3.45 9.17 71.98 0.66 -2.79 16 7 C -0.13 -2.59 9.17 71.98 0.66 -1.93 16 8 S 0.15 5.35 22.74 -56.49 -1.28 4.07 16 9 C -0.21 -7.95 3.81 24.64 0.09 -7.85 16 10 C 0.15 5.38 2.38 44.17 0.11 5.49 16 11 H 0.05 1.73 6.41 -2.39 -0.02 1.72 16 12 C -0.13 -3.51 8.86 71.98 0.64 -2.88 16 13 N -0.54 -23.17 4.52 -906.04 -4.09 -27.26 16 14 C 0.04 1.38 8.91 127.69 1.14 2.51 16 15 C 0.21 11.58 4.55 85.56 0.39 11.97 16 16 C -0.52 -29.43 8.41 25.60 0.22 -29.22 16 17 H 0.06 3.58 7.15 -2.91 -0.02 3.56 16 18 C 0.00 0.11 5.46 84.65 0.46 0.57 16 19 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 20 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.07 2.04 6.61 -2.39 -0.02 2.03 16 27 H 0.10 2.24 8.12 -2.39 -0.02 2.23 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.08 1.86 6.43 -2.38 -0.02 1.84 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 2.42 6.70 -2.39 -0.02 2.40 16 38 H 0.09 2.59 6.43 -2.39 -0.02 2.57 16 39 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 40 H 0.01 0.36 6.43 -2.39 -0.02 0.34 16 41 H -0.05 -2.93 8.12 -2.38 -0.02 -2.94 16 42 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -68.68 348.92 1.87 -66.81 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.98 Total: 9.34 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 5.84 Total: -22.85 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -5.69 Total: -104.22 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: 5.35 SS G_CDS: -1.28 Total: 4.07 kcal Total: -68.68 1.87 -66.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121092976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.901 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds