Wall clock time and date at job start Tue Mar 31 2020 06:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47069 * 2 1 4 4 N 1.29022 * 124.92044 * 90.04095 * 3 2 1 5 5 C 1.31788 * 117.12563 * 179.68072 * 4 3 2 6 6 C 1.50699 * 122.74774 * 180.33590 * 5 4 3 7 7 C 1.33631 * 114.49852 * 0.51508 * 5 4 3 8 8 C 1.50703 * 126.03486 * 179.78657 * 7 5 4 9 9 H 1.08996 * 109.47277 * 14.31083 * 8 7 5 10 10 C 1.53000 * 109.47395 * 254.29917 * 8 7 5 11 11 N 1.46906 * 109.46554 * 134.30622 * 8 7 5 12 12 C 1.46901 * 110.99552 * 177.46418 * 11 8 7 13 13 C 1.46906 * 111.00027 * 301.41460 * 11 8 7 14 14 C 1.52998 * 109.46886 * 170.00546 * 13 11 8 15 15 C 1.50698 * 109.46921 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00062 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00109 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99394 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99927 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47349 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47240 * 120.00186 * 19 17 15 22 22 H 1.48505 * 109.47288 * 240.00081 * 19 17 15 23 23 S 1.70982 * 124.91553 * 269.99724 * 3 2 1 24 24 H 1.09003 * 109.47090 * 299.99854 * 1 2 3 25 25 H 1.08993 * 109.47361 * 60.00188 * 1 2 3 26 26 H 1.09003 * 109.47324 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47494 * 239.99941 * 2 1 3 28 28 H 1.09002 * 109.47030 * 119.99336 * 2 1 3 29 29 H 1.09003 * 109.46812 * 270.19897 * 6 5 4 30 30 H 1.09000 * 109.47872 * 30.19490 * 6 5 4 31 31 H 1.09000 * 109.47061 * 150.20110 * 6 5 4 32 32 H 1.09011 * 109.46317 * 60.00331 * 10 8 7 33 33 H 1.08993 * 109.46962 * 179.97438 * 10 8 7 34 34 H 1.08996 * 109.47859 * 300.00809 * 10 8 7 35 35 H 1.09006 * 109.47135 * 177.51727 * 12 11 8 36 36 H 1.08998 * 109.47586 * 297.51883 * 12 11 8 37 37 H 1.09006 * 109.47415 * 57.51816 * 12 11 8 38 38 H 1.09001 * 109.46490 * 50.00492 * 13 11 8 39 39 H 1.09004 * 109.46770 * 290.00639 * 13 11 8 40 40 H 1.09004 * 109.46968 * 299.99699 * 14 13 11 41 41 H 1.08999 * 109.47330 * 59.99905 * 14 13 11 42 42 H 0.97006 * 119.99334 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2792 2.1169 1.0579 5 6 2.7204 3.3458 0.8792 6 6 3.0555 4.2663 2.0244 7 6 2.8428 3.7099 -0.4007 8 6 3.3173 5.0505 -0.8995 9 1 3.7863 5.5974 -0.0816 10 6 2.1245 5.8490 -1.4293 11 7 4.2931 4.8535 -1.9798 12 6 4.7337 6.1413 -2.5325 13 6 5.4392 4.0601 -1.5158 14 6 6.3045 3.6650 -2.7141 15 6 7.4798 2.8506 -2.2382 16 1 7.5979 2.6366 -1.1863 17 6 8.4043 2.3787 -3.1458 18 7 8.2601 2.6389 -4.4268 19 14 9.8614 1.3698 -2.5558 20 1 9.7938 1.2187 -1.0800 21 1 9.8252 0.0287 -3.1924 22 1 11.1234 2.0595 -2.9259 23 16 2.3586 2.3435 -1.4020 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 2.1683 4.8333 2.3062 30 1 3.3961 3.6776 2.8762 31 1 3.8443 4.9537 1.7191 32 1 1.4004 5.9951 -0.6276 33 1 2.4676 6.8187 -1.7896 34 1 1.6555 5.3021 -2.2472 35 1 5.4882 5.9683 -3.3000 36 1 3.8809 6.6591 -2.9715 37 1 5.1589 6.7522 -1.7361 38 1 5.0797 3.1612 -1.0150 39 1 6.0323 4.6519 -0.8186 40 1 5.7113 3.0732 -3.4113 41 1 6.6639 4.5640 -3.2149 42 1 8.9103 2.3066 -5.0654 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122156012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:28 Heat of formation + Delta-G solvation = 27.991974 kcal Electronic energy + Delta-G solvation = -20439.048774 eV Core-core repulsion = 17545.348259 eV Total energy + Delta-G solvation = -2893.700516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.87442 -37.71424 -34.37068 -33.28746 -31.77512 -30.42791 -28.93242 -27.37685 -25.84761 -25.08176 -23.94105 -21.76663 -21.16405 -19.95624 -18.58416 -17.58478 -16.43958 -15.64294 -15.29421 -14.80213 -14.52626 -14.30598 -13.86579 -13.80642 -13.47238 -13.25045 -12.93585 -12.50847 -12.45602 -12.29982 -11.98219 -11.91841 -11.69906 -11.65702 -11.42312 -11.16537 -11.14104 -10.97590 -10.87195 -10.72403 -10.52120 -9.87816 -9.39833 -9.30355 -9.12092 -8.79828 -8.33223 -8.32182 -7.79989 -5.99170 -4.00956 0.96646 1.65347 2.13129 2.97851 3.31241 3.38761 3.43287 4.18284 4.33644 4.52501 4.88289 4.93720 5.08405 5.16520 5.28149 5.36790 5.37399 5.41476 5.53681 5.63400 5.66984 5.72375 5.79684 5.82514 5.84096 5.91297 5.98098 6.05590 6.10550 6.19750 6.25675 6.45905 6.46164 6.53650 6.97033 7.44233 7.51536 7.77951 7.89840 7.99514 8.07867 8.44642 9.06035 9.62595 11.12240 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014496 B = 0.005406 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.109514 B = 5178.556631 C = 6153.433349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.023 3.977 4 N -0.473 5.473 5 C 0.053 3.947 6 C -0.075 4.075 7 C -0.203 4.203 8 C 0.153 3.847 9 H 0.056 0.944 10 C -0.141 4.141 11 N -0.537 5.537 12 C 0.024 3.976 13 C 0.062 3.938 14 C 0.031 3.969 15 C -0.519 4.519 16 H 0.052 0.948 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 S 0.178 5.822 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.018 0.982 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.024 0.976 41 H 0.017 0.983 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.712 2.140 7.870 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.254 4.254 4 N -0.188 5.188 5 C -0.080 4.080 6 C -0.134 4.134 7 C -0.325 4.325 8 C 0.042 3.958 9 H 0.073 0.927 10 C -0.199 4.199 11 N -0.262 5.262 12 C -0.124 4.124 13 C -0.065 4.065 14 C -0.007 4.007 15 C -0.558 4.558 16 H 0.071 0.929 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.210 1.210 23 S 0.436 5.564 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.043 0.957 41 H 0.036 0.964 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.021 1.385 6.742 17.437 hybrid contribution 1.617 0.397 1.607 2.313 sum -14.405 1.782 8.349 16.745 Atomic orbital electron populations 1.21751 0.93902 1.02182 1.02447 1.20151 0.96327 0.88012 1.04129 1.26948 1.04178 1.01878 0.92432 1.66082 1.15078 1.05534 1.32138 1.20025 1.02455 0.91745 0.93813 1.20307 1.01418 0.96829 0.94838 1.25597 1.10229 1.01117 0.95553 1.20002 0.93673 0.88810 0.93308 0.92663 1.21904 0.96839 0.99844 1.01290 1.62243 1.15290 1.17340 1.31352 1.22433 1.00566 0.89718 0.99668 1.22383 0.89350 0.95364 0.99388 1.19081 0.92997 0.96485 0.92105 1.21208 1.08119 1.33015 0.93473 0.92932 1.24965 0.98025 0.96323 0.94858 1.69983 1.36114 1.45995 1.01126 0.86576 0.82665 0.80095 0.78922 1.19810 1.20948 1.21009 1.84179 1.57852 1.04103 1.10292 0.92220 0.92443 0.91669 0.89673 0.89192 0.91178 0.90894 0.91017 0.92468 0.91739 0.91698 0.89946 0.92016 0.96299 0.92193 0.96329 0.95717 0.96449 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.89 37.16 0.37 -0.97 16 2 C -0.05 -0.52 6.52 -27.89 -0.18 -0.70 16 3 C 0.02 0.34 6.64 -13.46 -0.09 0.25 16 4 N -0.47 -7.70 10.53 -8.06 -0.08 -7.79 16 5 C 0.05 0.83 6.74 -84.23 -0.57 0.26 16 6 C -0.07 -0.94 10.01 36.00 0.36 -0.58 16 7 C -0.20 -3.24 3.80 -35.92 -0.14 -3.38 16 8 C 0.15 2.32 2.39 -68.86 -0.16 2.15 16 9 H 0.06 0.82 6.40 -51.93 -0.33 0.49 16 10 C -0.14 -1.75 8.86 37.16 0.33 -1.42 16 11 N -0.54 -9.71 4.53 -236.27 -1.07 -10.78 16 12 C 0.02 0.39 8.91 60.07 0.54 0.93 16 13 C 0.06 1.34 4.73 -3.82 -0.02 1.33 16 14 C 0.03 0.80 4.91 -27.88 -0.14 0.67 16 15 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 19 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 S 0.18 2.79 22.80 -107.50 -2.45 0.34 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.87 6.61 -51.93 -0.34 0.53 16 32 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.06 0.72 6.42 -51.93 -0.33 0.39 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.52 6.20 -51.93 -0.32 1.19 16 36 H 0.06 0.85 6.40 -51.93 -0.33 0.51 16 37 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.06 1.35 6.46 -51.93 -0.34 1.02 16 39 H 0.02 0.41 8.12 -51.93 -0.42 -0.02 16 40 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.02 0.47 6.43 -51.93 -0.33 0.14 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -31.58 348.63 -9.70 -41.28 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -6.95 Total: -3.95 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -0.11 Total: -15.07 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.42 Total: -44.75 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.45 Total: 0.34 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.58 -9.70 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122156012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.268 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds