Wall clock time and date at job start Tue Mar 31 2020 06:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99540 * 2 1 3 5 5 C 1.34384 * 126.51756 * 324.69028 * 4 2 1 6 6 N 1.34361 * 108.34127 * 179.89214 * 5 4 2 7 7 C 1.31274 * 109.30655 * 0.38029 * 6 5 4 8 8 S 1.76206 * 125.80271 * 179.76982 * 7 6 5 9 9 C 1.81001 * 99.99743 * 359.97438 * 8 7 6 10 10 C 1.53004 * 109.46649 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46724 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00352 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99967 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99646 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00457 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46904 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47502 * 119.99852 * 15 13 11 18 18 H 1.48500 * 109.47244 * 240.00207 * 15 13 11 19 19 N 1.36105 * 108.39316 * 359.76562 * 7 6 5 20 20 C 1.46502 * 126.50106 * 180.02562 * 19 7 6 21 21 C 1.52999 * 109.47226 * 299.97528 * 20 19 7 22 22 C 1.53001 * 109.47017 * 59.97598 * 20 19 7 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.08000 * 125.83059 * 0.02562 * 5 4 2 31 31 H 1.08999 * 109.47171 * 299.99345 * 9 8 7 32 32 H 1.08990 * 109.47692 * 59.99998 * 9 8 7 33 33 H 1.08988 * 109.47159 * 299.99687 * 10 9 8 34 34 H 1.09000 * 109.47257 * 60.00089 * 10 9 8 35 35 H 0.97010 * 119.99973 * 180.02562 * 14 13 11 36 36 H 1.09010 * 109.47057 * 179.97438 * 20 19 7 37 37 H 1.09000 * 109.46796 * 60.00215 * 21 20 19 38 38 H 1.09001 * 109.47323 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.47183 * 300.00005 * 21 20 19 40 40 H 1.08995 * 109.47127 * 60.00374 * 22 20 19 41 41 H 1.09005 * 109.47114 * 179.97438 * 22 20 19 42 42 H 1.08997 * 109.47003 * 299.99850 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.4680 -0.6935 2.4501 6 7 2.2147 -1.4499 3.2720 7 6 3.2367 -1.9353 2.6063 8 16 4.4941 -2.9792 3.2652 9 6 3.9251 -3.1138 4.9782 10 6 4.8903 -4.0001 5.7680 11 6 4.4169 -4.1117 7.1943 12 1 3.5173 -3.6019 7.5062 13 6 5.1316 -4.8655 8.1009 14 7 6.2268 -5.4868 7.7210 15 14 4.5445 -5.0045 9.8688 16 1 3.2971 -4.2171 10.0394 17 1 4.2790 -6.4294 10.1917 18 1 5.5910 -4.4770 10.7808 19 7 3.1600 -1.4951 1.3207 20 6 4.0989 -1.7992 0.2380 21 6 5.4944 -1.2999 0.6178 22 6 4.1427 -3.3116 0.0107 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 0.5668 -0.1642 2.7224 31 1 3.8917 -2.1220 5.4290 32 1 2.9286 -3.5549 4.9965 33 1 4.9242 -4.9919 5.3174 34 1 5.8867 -3.5585 5.7497 35 1 6.7295 -6.0175 8.3587 36 1 3.7720 -1.3037 -0.6763 37 1 5.8212 -1.7955 1.5320 38 1 6.1931 -1.5266 -0.1876 39 1 5.4632 -0.2225 0.7797 40 1 3.1486 -3.6673 -0.2599 41 1 4.8410 -3.5379 -0.7952 42 1 4.4696 -3.8071 0.9249 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128892509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:36 Heat of formation + Delta-G solvation = 25.281059 kcal Electronic energy + Delta-G solvation = -20064.326589 eV Core-core repulsion = 17170.508519 eV Total energy + Delta-G solvation = -2893.818070 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.84033 -36.04836 -35.67287 -33.65991 -30.90111 -30.57584 -28.49947 -27.47625 -27.31629 -25.22860 -23.19607 -22.83586 -21.35527 -20.51768 -19.04977 -17.11995 -16.49927 -15.98385 -15.40189 -14.70193 -14.47970 -14.42486 -14.36864 -13.81295 -13.72963 -13.42873 -13.30360 -12.97701 -12.42597 -12.32768 -12.28583 -12.12997 -11.77756 -11.60191 -11.55407 -11.43911 -11.37777 -11.03306 -11.01093 -10.56586 -10.23605 -9.95868 -9.69244 -9.60512 -9.41382 -9.04940 -8.84514 -8.39627 -6.91583 -6.04001 -4.07217 1.76619 2.07473 2.85337 3.02406 3.29260 3.31832 3.39261 3.44983 4.41408 4.43717 4.46027 4.65494 4.74579 4.85505 4.93422 5.14055 5.30646 5.32272 5.39090 5.40705 5.43226 5.53436 5.59947 5.61862 5.62465 5.67634 5.81206 5.95425 5.99710 6.05622 6.13566 6.16077 6.35362 6.51992 6.80324 6.91914 7.13583 7.55598 7.62773 7.92875 8.18084 8.30853 8.97858 9.56691 11.07077 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.026268 B = 0.003777 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.686096 B = 7412.355704 C = 8127.677687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.014 4.014 3 C -0.142 4.142 4 C -0.025 4.025 5 C -0.015 4.015 6 N -0.487 5.487 7 C 0.208 3.792 8 S -0.055 6.055 9 C -0.073 4.073 10 C 0.035 3.965 11 C -0.515 4.515 12 H 0.061 0.939 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 N -0.441 5.441 20 C 0.130 3.870 21 C -0.172 4.172 22 C -0.173 4.173 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.164 0.836 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.261 0.739 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 10.452 -20.078 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 C -0.200 4.200 4 C -0.141 4.141 5 C -0.165 4.165 6 N -0.208 5.208 7 C -0.162 4.162 8 S 0.177 5.823 9 C -0.221 4.221 10 C -0.004 4.004 11 C -0.555 4.555 12 H 0.079 0.921 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.725 3.275 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 N -0.128 5.128 20 C 0.027 3.973 21 C -0.230 4.230 22 C -0.231 4.231 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.182 0.818 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.166 9.674 -19.815 22.648 hybrid contribution -1.216 0.614 0.686 1.525 sum -6.382 10.288 -19.129 22.638 Atomic orbital electron populations 1.21790 0.93483 1.02338 1.02161 1.19483 0.96131 0.94951 0.92855 1.21847 1.01008 0.94990 1.02133 1.21173 0.91618 1.02707 0.98601 1.21949 1.01726 1.03390 0.89419 1.70858 1.04419 1.13862 1.31693 1.25298 1.02044 1.05104 0.83734 1.85401 1.27435 1.55966 1.13483 1.23898 1.04058 1.05191 0.88963 1.18974 0.93560 0.93951 0.93959 1.21127 1.10223 1.30514 0.93650 0.92112 1.25008 0.94895 0.95372 0.99035 1.69980 1.16196 1.32035 1.35020 0.86451 0.78844 0.77842 0.84406 1.19567 1.20928 1.20933 1.45664 1.20359 1.37951 1.08776 1.21425 0.89497 0.97671 0.88722 1.22282 0.94573 1.02084 1.04064 1.22288 1.02922 0.93693 1.04159 0.92309 0.92162 0.91933 0.91075 0.92019 0.92912 0.92224 0.81832 0.90091 0.90085 0.95588 0.95589 0.92892 0.88685 0.89806 0.90530 0.92036 0.92032 0.90528 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.79 37.16 0.33 -0.79 16 2 C -0.01 -0.13 3.05 -91.77 -0.28 -0.41 16 3 C -0.14 -1.18 9.18 37.16 0.34 -0.84 16 4 C -0.02 -0.33 5.89 -81.32 -0.48 -0.81 16 5 C -0.01 -0.23 11.04 -17.81 -0.20 -0.42 16 6 N -0.49 -9.33 10.60 -13.45 -0.14 -9.48 16 7 C 0.21 3.73 7.46 -88.75 -0.66 3.06 16 8 S -0.06 -1.03 17.77 -107.50 -1.91 -2.94 16 9 C -0.07 -1.63 5.13 37.16 0.19 -1.44 16 10 C 0.03 0.91 4.98 -27.88 -0.14 0.77 16 11 C -0.51 -14.67 9.11 -34.44 -0.31 -14.98 16 12 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 15 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 N -0.44 -6.37 2.66 -105.30 -0.28 -6.65 16 20 C 0.13 1.44 3.42 -67.93 -0.23 1.21 16 21 C -0.17 -1.85 9.22 37.16 0.34 -1.50 16 22 C -0.17 -1.86 9.22 37.16 0.34 -1.51 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.49 7.30 -51.93 -0.38 0.12 16 26 H 0.07 0.61 7.03 -51.93 -0.37 0.24 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.16 2.14 7.38 -52.49 -0.39 1.75 16 31 H 0.08 1.85 8.14 -51.92 -0.42 1.42 16 32 H 0.08 1.85 8.14 -51.92 -0.42 1.43 16 33 H 0.03 0.71 8.14 -51.94 -0.42 0.29 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.10 0.85 6.75 -51.92 -0.35 0.50 16 37 H 0.08 1.09 5.87 -51.93 -0.30 0.79 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.09 5.87 -51.93 -0.30 0.79 16 LS Contribution 349.22 15.07 5.26 5.26 Total: -1.00 -31.63 349.22 -9.34 -40.96 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.13 Total: -1.86 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -0.86 Total: -16.09 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.31 Total: -42.07 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -1.03 SS G_CDS: -1.91 Total: -2.94 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.63 -9.34 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128892509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.245 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds