Wall clock time and date at job start Tue Mar 31 2020 06:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33647 * 122.75011 * 2 1 4 4 S 1.76199 * 107.92520 * 179.97438 * 3 2 1 5 5 C 1.70980 * 90.28129 * 0.27365 * 4 3 2 6 6 C 1.50703 * 124.91159 * 179.84382 * 5 4 3 7 7 N 1.46906 * 109.46584 * 269.99633 * 6 5 4 8 8 C 1.46903 * 110.99948 * 293.95363 * 7 6 5 9 9 C 1.50697 * 109.46855 * 164.07848 * 8 7 6 10 10 H 1.07993 * 120.00208 * 354.98125 * 9 8 7 11 11 C 1.37877 * 119.99693 * 174.98219 * 9 8 7 12 12 N 1.31520 * 119.99829 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00518 * 359.97438 * 11 9 8 14 14 H 1.48493 * 109.47050 * 89.99868 * 13 11 9 15 15 H 1.48492 * 109.47526 * 210.00196 * 13 11 9 16 16 H 1.48510 * 109.46933 * 330.00243 * 13 11 9 17 17 C 1.46903 * 110.99630 * 170.00585 * 7 6 5 18 18 C 1.53002 * 109.46701 * 284.08973 * 17 7 6 19 19 C 1.53002 * 109.46815 * 184.36153 * 18 17 7 20 20 C 1.52998 * 109.47289 * 175.00069 * 19 18 17 21 21 C 1.53001 * 109.46974 * 294.99791 * 19 18 17 22 22 N 1.29023 * 110.17058 * 359.83637 * 5 4 3 23 23 H 1.09004 * 109.47292 * 269.71242 * 1 2 3 24 24 H 1.09002 * 109.46947 * 149.71295 * 1 2 3 25 25 H 1.09000 * 109.47131 * 29.71540 * 1 2 3 26 26 H 1.08003 * 126.03455 * 0.03148 * 3 2 1 27 27 H 1.08993 * 109.47593 * 29.99751 * 6 5 4 28 28 H 1.08999 * 109.47013 * 150.00227 * 6 5 4 29 29 H 1.09005 * 109.47229 * 284.07770 * 8 7 6 30 30 H 1.08999 * 109.47111 * 44.07824 * 8 7 6 31 31 H 0.96998 * 120.00079 * 179.97438 * 12 11 9 32 32 H 1.09000 * 109.47386 * 44.08745 * 17 7 6 33 33 H 1.08998 * 109.47120 * 164.09129 * 17 7 6 34 34 H 1.09002 * 109.46871 * 304.35576 * 18 17 7 35 35 H 1.08996 * 109.47374 * 64.36027 * 18 17 7 36 36 H 1.08993 * 109.47351 * 54.99595 * 19 18 17 37 37 H 1.09000 * 109.47407 * 59.98829 * 20 19 18 38 38 H 1.08993 * 109.47796 * 179.97438 * 20 19 18 39 39 H 1.09004 * 109.46910 * 300.00014 * 20 19 18 40 40 H 1.09007 * 109.46890 * 299.99974 * 21 19 18 41 41 H 1.08995 * 109.47444 * 59.99658 * 21 19 18 42 42 H 1.09004 * 109.47121 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6732 0.0007 5 6 3.5039 -0.9818 -0.0072 6 6 4.4836 -2.1270 -0.0140 7 7 4.8003 -2.4920 -1.4013 8 6 3.6199 -3.0377 -2.0846 9 6 3.8551 -3.0345 -3.5731 10 1 4.7528 -2.5904 -3.9770 11 6 2.9241 -3.5985 -4.4193 12 7 3.1295 -3.5962 -5.7184 13 14 1.3715 -4.3673 -3.7208 14 1 0.3045 -3.3381 -3.6360 15 1 0.9244 -5.4721 -4.6065 16 1 1.6516 -4.9029 -2.3642 17 6 5.9230 -3.4381 -1.4534 18 6 7.2327 -2.6897 -1.1976 19 6 8.4104 -3.6530 -1.3591 20 6 9.7238 -2.8795 -1.2266 21 6 8.3409 -4.7297 -0.2744 22 7 2.2199 -1.1083 -0.0063 23 1 -0.3634 -0.0052 1.0277 24 1 -0.3633 -0.8874 -0.5183 25 1 -0.3633 0.8925 -0.5094 26 1 1.8391 2.1309 0.0005 27 1 5.3966 -1.8272 0.5003 28 1 4.0440 -2.9842 0.4959 29 1 3.4443 -4.0591 -1.7467 30 1 2.7497 -2.4236 -1.8529 31 1 2.4747 -3.9933 -6.3137 32 1 5.7877 -4.2048 -0.6906 33 1 5.9582 -3.9063 -2.4371 34 1 7.3304 -1.8732 -1.9132 35 1 7.2292 -2.2867 -0.1849 36 1 8.3631 -4.1232 -2.3413 37 1 9.7710 -2.4092 -0.2444 38 1 10.5628 -3.5658 -1.3412 39 1 9.7733 -2.1124 -1.9994 40 1 8.3882 -4.2595 0.7079 41 1 7.4053 -5.2807 -0.3687 42 1 9.1802 -5.4158 -0.3892 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131094456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:09 Heat of formation + Delta-G solvation = 30.850005 kcal Electronic energy + Delta-G solvation = -20369.164431 eV Core-core repulsion = 17475.587849 eV Total energy + Delta-G solvation = -2893.576582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.61363 -37.61362 -35.51706 -32.58974 -31.85831 -29.13752 -28.59926 -27.32138 -27.02155 -25.57014 -22.50023 -22.32869 -19.99638 -19.59829 -19.35890 -17.33716 -16.78163 -15.43855 -15.16439 -14.94185 -14.73963 -14.10793 -13.94295 -13.64690 -13.45081 -13.07526 -12.77087 -12.55093 -12.35316 -12.28077 -12.16924 -12.08710 -12.03407 -11.52071 -11.33344 -11.04046 -10.82690 -10.74207 -10.48919 -10.38128 -10.15839 -9.95071 -9.83288 -9.38524 -9.18133 -9.03445 -8.50158 -8.39495 -7.44175 -6.00373 -3.96473 1.02015 1.71472 2.08869 3.08487 3.34201 3.40295 3.46129 4.32725 4.48045 4.75475 5.09970 5.16811 5.21139 5.25497 5.32594 5.35162 5.45877 5.52782 5.67507 5.69063 5.72206 5.81537 5.88593 5.91099 5.93331 6.03539 6.06621 6.13235 6.13537 6.23570 6.41466 6.49872 6.51684 6.69833 6.76715 6.99020 7.04182 7.68996 7.84880 8.00738 8.13098 8.69222 9.09112 9.62499 11.12647 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.010130 B = 0.007314 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.278901 B = 3827.445884 C = 5933.925860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.071 3.929 3 C -0.278 4.278 4 S 0.126 5.874 5 C 0.086 3.914 6 C 0.123 3.877 7 N -0.521 5.521 8 C 0.155 3.845 9 C -0.504 4.504 10 H 0.080 0.920 11 C 0.069 3.931 12 N -0.902 5.902 13 Si 0.870 3.130 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.266 1.266 17 C 0.062 3.938 18 C -0.108 4.108 19 C -0.098 4.098 20 C -0.144 4.144 21 C -0.147 4.147 22 N -0.472 5.472 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.171 0.829 27 H 0.086 0.914 28 H 0.055 0.945 29 H -0.009 1.009 30 H 0.039 0.961 31 H 0.262 0.738 32 H 0.025 0.975 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.669 5.695 14.159 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.062 4.062 3 C -0.418 4.418 4 S 0.381 5.619 5 C -0.193 4.193 6 C -0.009 4.009 7 N -0.246 5.246 8 C 0.029 3.971 9 C -0.542 4.542 10 H 0.098 0.902 11 C -0.132 4.132 12 N -0.541 5.541 13 Si 0.698 3.302 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.191 1.191 17 C -0.065 4.065 18 C -0.146 4.146 19 C -0.117 4.117 20 C -0.201 4.201 21 C -0.205 4.205 22 N -0.187 5.187 23 H 0.090 0.910 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.188 0.812 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.009 0.991 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.468 6.075 13.745 15.992 hybrid contribution -2.147 -1.070 0.521 2.455 sum 3.321 5.005 14.266 15.479 Atomic orbital electron populations 1.20333 0.87649 1.03368 1.02383 1.20255 0.98070 0.86704 1.01152 1.26694 0.95553 1.03549 1.15986 1.83731 1.07025 1.03527 1.67606 1.26891 0.93627 0.98045 1.00755 1.20674 0.94293 0.92423 0.93500 1.62009 1.08715 1.43956 1.09923 1.20350 0.88532 0.93052 0.95191 1.21012 1.07576 1.37216 0.88396 0.90160 1.24857 0.97811 0.95833 0.94708 1.69898 1.35950 1.45993 1.02280 0.86921 0.84431 0.79470 0.79385 1.20231 1.21365 1.19066 1.22112 0.89438 0.92687 1.02304 1.21645 0.93365 0.98429 1.01166 1.21107 0.94783 0.96184 0.99627 1.21816 0.96854 0.99996 1.01469 1.21887 1.01576 0.98542 0.98472 1.66146 1.04754 1.31431 1.16416 0.91022 0.90596 0.90945 0.81162 0.89543 0.92742 0.99149 0.94325 0.92800 0.95702 0.88963 0.91038 0.93051 0.90895 0.93110 0.93200 0.92669 0.93159 0.92360 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.31 36.00 0.37 -0.65 16 2 C 0.07 1.17 6.74 -84.22 -0.57 0.60 16 3 C -0.28 -4.03 11.13 29.12 0.32 -3.70 16 4 S 0.13 1.89 23.18 -107.50 -2.49 -0.60 16 5 C 0.09 1.54 6.09 -13.46 -0.08 1.46 16 6 C 0.12 2.14 5.37 -4.97 -0.03 2.11 16 7 N -0.52 -10.75 4.37 -237.51 -1.04 -11.79 16 8 C 0.15 3.87 3.68 -4.98 -0.02 3.85 16 9 C -0.50 -14.53 8.85 -34.44 -0.30 -14.84 16 10 H 0.08 2.51 8.05 -52.49 -0.42 2.09 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 13 Si 0.87 22.47 27.57 -169.99 -4.69 17.79 16 14 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.27 -6.72 6.40 56.52 0.36 -6.35 16 17 C 0.06 1.13 4.47 -3.82 -0.02 1.12 16 18 C -0.11 -1.59 4.73 -26.73 -0.13 -1.72 16 19 C -0.10 -1.25 2.92 -90.62 -0.26 -1.52 16 20 C -0.14 -1.59 9.19 37.16 0.34 -1.24 16 21 C -0.15 -1.71 8.95 37.16 0.33 -1.38 16 22 N -0.47 -9.12 9.35 -8.05 -0.08 -9.19 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 26 H 0.17 1.90 8.06 -52.48 -0.42 1.48 16 27 H 0.09 1.25 6.71 -51.93 -0.35 0.90 16 28 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 29 H -0.01 -0.24 6.76 -51.93 -0.35 -0.59 16 30 H 0.04 1.02 5.71 -51.93 -0.30 0.72 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.02 0.42 6.64 -51.93 -0.34 0.08 16 33 H 0.09 1.93 7.12 -51.93 -0.37 1.56 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 0.69 6.94 -51.93 -0.36 0.33 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 41 H 0.06 0.72 6.66 -51.93 -0.35 0.38 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -32.16 347.43 -9.50 -41.67 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.08 Total: -1.84 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -0.14 Total: -13.98 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.34 Total: -48.27 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.69 Total: 17.79 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.49 Total: -0.60 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.16 -9.50 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131094456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.518 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds