Wall clock time and date at job start Tue Mar 31 2020 07:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47226 * 2 1 4 4 C 1.52999 * 109.47143 * 305.10550 * 3 2 1 5 5 C 1.53005 * 109.46814 * 295.97072 * 4 3 2 6 6 C 1.52996 * 109.46956 * 65.10482 * 3 2 1 7 7 N 1.46905 * 109.47155 * 64.43133 * 6 3 2 8 8 C 1.46898 * 110.99945 * 209.75511 * 7 6 3 9 9 C 1.50703 * 109.47161 * 170.00264 * 8 7 6 10 10 H 1.07999 * 119.99744 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00134 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00169 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99768 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47153 * 59.99899 * 13 11 9 15 15 H 1.48501 * 109.46476 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47218 * 299.99609 * 13 11 9 17 17 C 1.46907 * 110.99932 * 85.80524 * 7 6 3 18 18 C 1.50699 * 109.47015 * 287.58822 * 17 7 6 19 19 N 1.29030 * 124.91707 * 98.46179 * 18 17 7 20 20 C 1.31783 * 117.12359 * 180.23058 * 19 18 17 21 21 C 1.33642 * 114.49964 * 359.47957 * 20 19 18 22 22 S 1.70978 * 124.91442 * 278.15641 * 18 17 7 23 23 H 1.08995 * 109.47066 * 185.61163 * 1 2 3 24 24 H 1.08996 * 109.46964 * 305.61610 * 1 2 3 25 25 H 1.09001 * 109.46750 * 65.61288 * 1 2 3 26 26 H 1.09003 * 109.47270 * 240.00195 * 2 1 3 27 27 H 1.09004 * 109.47013 * 119.99892 * 2 1 3 28 28 H 1.08997 * 109.46984 * 185.10342 * 3 2 1 29 29 H 1.08996 * 109.46816 * 55.96700 * 4 3 2 30 30 H 1.09000 * 109.46893 * 175.97641 * 4 3 2 31 31 H 1.08997 * 109.47230 * 66.08222 * 5 4 3 32 32 H 1.08999 * 109.46694 * 186.07985 * 5 4 3 33 33 H 1.09002 * 109.46874 * 306.07919 * 5 4 3 34 34 H 1.08994 * 109.47344 * 304.43325 * 6 3 2 35 35 H 1.09002 * 109.47340 * 184.42812 * 6 3 2 36 36 H 1.09002 * 109.47793 * 290.00042 * 8 7 6 37 37 H 1.09001 * 109.46994 * 50.00127 * 8 7 6 38 38 H 0.96995 * 119.99820 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.47174 * 167.58987 * 17 7 6 40 40 H 1.08998 * 109.47209 * 47.58546 * 17 7 6 41 41 H 1.07994 * 122.75060 * 179.75535 * 20 19 18 42 42 H 1.07995 * 126.03626 * 180.27464 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4279 2.1999 -1.1801 5 6 1.9115 1.5775 -2.4915 6 6 1.6375 2.1257 1.3084 7 7 2.3102 1.4632 2.4339 8 6 1.5009 1.5513 3.6567 9 6 2.0951 0.6611 4.7176 10 1 2.9847 0.0870 4.5046 11 6 1.5024 0.5788 5.9598 12 7 0.4188 1.2776 6.2190 13 14 2.2385 -0.5253 7.2745 14 1 3.6270 -0.0878 7.5678 15 1 1.4204 -0.4360 8.5106 16 1 2.2536 -1.9291 6.7906 17 6 3.6514 2.0229 2.6489 18 6 4.5690 1.5669 1.5438 19 7 4.8750 2.2650 0.5027 20 6 5.6906 1.7125 -0.3727 21 6 6.1037 0.4840 -0.0468 22 16 5.3611 0.0526 1.4918 23 1 -0.3633 -1.0227 0.1005 24 1 -0.3633 0.5984 0.8354 25 1 -0.3633 0.4243 -0.9360 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.1262 1.4438 -0.0914 29 1 0.3410 2.1375 -1.1274 30 1 1.7345 3.2451 -1.1393 31 1 1.5144 0.5665 -2.5821 32 1 1.5638 2.1809 -3.3300 33 1 3.0010 1.5417 -2.4967 34 1 0.5576 2.0549 1.4381 35 1 1.9316 3.1748 1.2760 36 1 1.4898 2.5819 4.0117 37 1 0.4817 1.2301 3.4417 38 1 0.0021 1.2199 7.0929 39 1 4.0390 1.6793 3.6079 40 1 3.5952 3.1114 2.6485 41 1 6.0032 2.2132 -1.2770 42 1 6.7742 -0.1349 -0.6243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135119964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:26 Heat of formation + Delta-G solvation = 38.300661 kcal Electronic energy + Delta-G solvation = -21178.632371 eV Core-core repulsion = 18285.378874 eV Total energy + Delta-G solvation = -2893.253497 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.64990 -37.73993 -35.45983 -32.59948 -30.86805 -30.48086 -28.43341 -27.38886 -25.63919 -23.67155 -23.25526 -22.62426 -20.49484 -19.51091 -18.55680 -17.61883 -16.30855 -15.70606 -15.39523 -14.79666 -14.76185 -14.17731 -14.06553 -13.71614 -13.50798 -12.97640 -12.86654 -12.54248 -12.22243 -12.02296 -11.65087 -11.57198 -11.26699 -11.21729 -11.14035 -11.03514 -10.78143 -10.68372 -10.51307 -10.09983 -9.98203 -9.87835 -9.75949 -9.29848 -9.19310 -8.92496 -8.55121 -8.45376 -7.33327 -6.06278 -4.08499 1.03154 1.72230 2.16191 3.10850 3.31335 3.36120 3.38522 4.38251 4.48250 4.93504 5.25862 5.28570 5.33565 5.36227 5.40026 5.49783 5.60327 5.70328 5.71676 5.78496 5.96405 6.05310 6.10561 6.11696 6.20224 6.26050 6.26653 6.30413 6.42711 6.45300 6.51534 6.67039 6.74453 6.95482 7.00923 7.22343 7.29894 7.74731 7.99539 8.05681 8.13442 8.48062 8.98226 9.56246 11.04161 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.015695 B = 0.006403 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.579190 B = 4371.665081 C = 5461.950587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.091 4.091 4 C -0.119 4.119 5 C -0.145 4.145 6 C 0.059 3.941 7 N -0.526 5.526 8 C 0.196 3.804 9 C -0.512 4.512 10 H 0.062 0.938 11 C 0.059 3.941 12 N -0.896 5.896 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C 0.127 3.873 18 C 0.086 3.914 19 N -0.483 5.483 20 C 0.038 3.962 21 C -0.288 4.288 22 S 0.146 5.854 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.029 0.971 36 H -0.007 1.007 37 H 0.036 0.964 38 H 0.262 0.738 39 H 0.107 0.893 40 H 0.054 0.946 41 H 0.166 0.834 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 -0.747 -13.673 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.111 4.111 4 C -0.157 4.157 5 C -0.203 4.203 6 C -0.070 4.070 7 N -0.251 5.251 8 C 0.072 3.928 9 C -0.550 4.550 10 H 0.081 0.919 11 C -0.143 4.143 12 N -0.535 5.535 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.201 1.201 17 C -0.004 4.004 18 C -0.191 4.191 19 N -0.199 5.199 20 C -0.114 4.114 21 C -0.428 4.428 22 S 0.400 5.600 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.011 0.989 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.125 0.875 40 H 0.072 0.928 41 H 0.183 0.817 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.600 -1.544 -12.998 14.659 hybrid contribution 0.495 0.678 0.039 0.841 sum 7.095 -0.865 -12.959 14.799 Atomic orbital electron populations 1.21826 0.96828 1.00940 1.01099 1.21406 0.95339 0.96573 1.01398 1.21439 1.01496 0.94837 0.93280 1.21554 1.00394 0.99157 0.94561 1.21731 1.00889 1.00547 0.97092 1.22213 0.98616 0.95009 0.91134 1.61998 1.01151 1.54426 1.07506 1.19769 0.92815 0.95732 0.84510 1.21096 1.11986 1.25979 0.95985 0.91945 1.24958 0.94974 0.95871 0.98481 1.69939 1.19778 1.41085 1.22700 0.86611 0.79050 0.81235 0.80855 1.20223 1.21370 1.20100 1.20718 0.89044 0.97486 0.93141 1.27355 1.00200 0.93616 0.97941 1.66395 1.15222 1.35742 1.02511 1.21674 0.96983 0.92763 0.99941 1.27034 1.10858 1.02092 1.02783 1.84221 1.38757 1.20007 1.17052 0.93684 0.92195 0.93630 0.93835 0.90419 0.90033 0.92158 0.92742 0.92889 0.93635 0.93202 0.91537 0.95268 0.98936 0.94637 0.92808 0.87465 0.92774 0.81707 0.81419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.11 37.16 0.34 -1.91 16 2 C -0.11 -1.74 5.26 -26.73 -0.14 -1.88 16 3 C -0.09 -1.45 2.11 -90.62 -0.19 -1.64 16 4 C -0.12 -1.65 5.06 -26.73 -0.14 -1.78 16 5 C -0.15 -1.77 9.49 37.16 0.35 -1.42 16 6 C 0.06 1.07 4.30 -3.82 -0.02 1.05 16 7 N -0.53 -10.69 3.74 -237.51 -0.89 -11.58 16 8 C 0.20 4.83 4.65 -4.98 -0.02 4.81 16 9 C -0.51 -13.56 8.28 -34.44 -0.29 -13.84 16 10 H 0.06 1.62 7.26 -52.49 -0.38 1.24 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 13 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 17 C 0.13 2.42 5.37 -4.97 -0.03 2.40 16 18 C 0.09 1.45 4.94 -13.46 -0.07 1.38 16 19 N -0.48 -7.78 8.90 -11.86 -0.11 -7.88 16 20 C 0.04 0.51 11.03 -19.18 -0.21 0.30 16 21 C -0.29 -3.57 11.37 29.12 0.33 -3.24 16 22 S 0.15 2.16 23.18 -107.50 -2.49 -0.34 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.99 6.24 -51.93 -0.32 0.67 16 25 H 0.04 0.61 6.60 -51.93 -0.34 0.26 16 26 H 0.04 0.64 6.94 -51.93 -0.36 0.28 16 27 H 0.08 1.42 7.60 -51.93 -0.39 1.03 16 28 H 0.08 1.35 3.81 -51.93 -0.20 1.15 16 29 H 0.06 0.82 6.24 -51.93 -0.32 0.49 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.63 6.97 -51.93 -0.36 0.27 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.24 5.69 -51.93 -0.30 0.95 16 35 H 0.03 0.54 7.59 -51.93 -0.39 0.15 16 36 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 37 H 0.04 0.94 7.79 -51.93 -0.40 0.54 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.11 2.15 6.59 -51.93 -0.34 1.81 16 40 H 0.05 1.04 7.73 -51.93 -0.40 0.64 16 41 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 338.51 15.07 5.10 5.10 Total: -1.00 -27.84 338.51 -9.46 -37.29 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.62 Total: 0.76 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -0.17 Total: -14.25 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.26 Total: -44.51 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.49 Total: -0.34 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.84 -9.46 -37.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135119964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.593 kcal (2) G-P(sol) polarization free energy of solvation -27.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds