Wall clock time and date at job start Tue Mar 31 2020 06:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33639 * 122.75042 * 2 1 4 4 S 1.76204 * 107.92643 * 180.02562 * 3 2 1 5 5 C 1.70981 * 90.28080 * 0.02562 * 4 3 2 6 6 C 1.50697 * 124.91754 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47466 * 270.02559 * 6 5 4 8 8 N 1.46899 * 109.47254 * 179.97438 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46950 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47312 * 300.00123 * 10 9 8 12 12 C 1.52997 * 109.47169 * 60.00159 * 10 9 8 13 13 C 1.53003 * 109.47071 * 180.02562 * 10 9 8 14 14 C 1.50704 * 109.47153 * 179.97438 * 13 10 9 15 15 H 1.07997 * 119.99780 * 359.97438 * 14 13 10 16 16 C 1.37871 * 119.99793 * 180.02562 * 14 13 10 17 17 N 1.31521 * 120.00052 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00014 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46961 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47148 * 119.99913 * 18 16 14 21 21 H 1.48500 * 109.47212 * 240.00089 * 18 16 14 22 22 N 1.29034 * 110.16653 * 0.24136 * 5 4 3 23 23 H 1.08996 * 109.47430 * 89.97105 * 1 2 3 24 24 H 1.09003 * 109.47220 * 209.97495 * 1 2 3 25 25 H 1.09003 * 109.46724 * 329.97367 * 1 2 3 26 26 H 1.07995 * 126.04025 * 0.03983 * 3 2 1 27 27 H 1.09002 * 109.47120 * 150.02312 * 6 5 4 28 28 H 1.08998 * 109.46862 * 30.03114 * 6 5 4 29 29 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 30 30 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 31 31 H 1.00902 * 111.00582 * 303.95797 * 8 7 6 32 32 H 1.08995 * 109.47167 * 300.00240 * 9 8 7 33 33 H 1.09003 * 109.46442 * 60.00214 * 9 8 7 34 34 H 1.09002 * 109.47029 * 60.00405 * 11 10 9 35 35 H 1.09000 * 109.47152 * 180.02562 * 11 10 9 36 36 H 1.08993 * 109.47356 * 300.00089 * 11 10 9 37 37 H 1.09005 * 109.46874 * 60.00300 * 12 10 9 38 38 H 1.09000 * 109.47103 * 179.97438 * 12 10 9 39 39 H 1.09002 * 109.47446 * 299.99763 * 12 10 9 40 40 H 1.08995 * 109.47051 * 300.00167 * 13 10 9 41 41 H 1.09003 * 109.46901 * 60.00330 * 13 10 9 42 42 H 0.97005 * 119.99618 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9333 0.6731 -0.0007 5 6 3.5040 -0.9819 -0.0018 6 6 4.4835 -2.1271 -0.0033 7 6 4.8145 -2.5132 -1.4463 8 7 5.7697 -3.6292 -1.4478 9 6 6.1110 -4.0282 -2.8198 10 6 7.1051 -5.1906 -2.7805 11 6 8.3738 -4.7520 -2.0463 12 6 6.4751 -6.3759 -2.0464 13 6 7.4611 -5.6058 -4.2094 14 6 8.4408 -6.7503 -4.1707 15 1 8.7763 -7.1420 -3.2218 16 6 8.9095 -7.2965 -5.3466 17 7 8.5020 -6.8184 -6.5021 18 14 10.1244 -8.7146 -5.2987 19 1 10.4219 -9.0640 -3.8864 20 1 9.5374 -9.8927 -5.9864 21 1 11.3791 -8.3150 -5.9852 22 7 2.2199 -1.1083 -0.0066 23 1 -0.3634 0.0005 -1.0276 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3633 0.8898 0.5143 26 1 1.8392 2.1307 0.0006 27 1 4.0435 -2.9823 0.5098 28 1 5.3961 -1.8253 0.5106 29 1 5.2545 -1.6581 -1.9594 30 1 3.9018 -2.8150 -1.9601 31 1 6.5987 -3.3964 -0.9218 32 1 5.2073 -4.3411 -3.3426 33 1 6.5595 -3.1835 -3.3428 34 1 8.1206 -4.4560 -1.0283 35 1 9.0822 -5.5799 -2.0187 36 1 8.8227 -3.9076 -2.5692 37 1 5.5713 -6.6884 -2.5695 38 1 7.1832 -7.2041 -2.0188 39 1 6.2219 -6.0799 -1.0284 40 1 6.5574 -5.9180 -4.7328 41 1 7.9102 -4.7611 -4.7320 42 1 8.8316 -7.2030 -7.3295 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135146716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:46 Heat of formation + Delta-G solvation = 17.167708 kcal Electronic energy + Delta-G solvation = -19377.744451 eV Core-core repulsion = 16483.574560 eV Total energy + Delta-G solvation = -2894.169891 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.10308 -37.77896 -35.31182 -32.97341 -32.03150 -29.89016 -27.84403 -26.93903 -26.31500 -25.55050 -23.83433 -22.19517 -21.68436 -19.92321 -18.01079 -17.68263 -16.23908 -15.90078 -15.49391 -15.23630 -14.74887 -14.28607 -14.11750 -13.85115 -13.36787 -13.20726 -13.02294 -12.74236 -12.61402 -12.27845 -12.15196 -11.96249 -11.57127 -11.53184 -11.31975 -10.95843 -10.82418 -10.73564 -10.48024 -10.25319 -10.10338 -9.83707 -9.67180 -9.63007 -9.03873 -8.91369 -8.79030 -8.30561 -8.13494 -5.94891 -3.94877 0.46491 1.13610 1.51815 2.54257 3.33512 3.41369 3.44852 3.75434 4.40436 4.51684 4.80743 4.89613 4.93309 4.99884 5.10430 5.29510 5.38371 5.40947 5.41422 5.63858 5.68487 5.75061 5.90305 5.92639 5.99330 6.02867 6.26004 6.34780 6.52196 6.68139 6.80114 6.85138 7.20455 7.22784 7.28398 7.38275 7.54468 7.64703 7.72651 7.87286 8.05650 8.49951 9.10809 9.67944 11.16853 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.040873 B = 0.002592 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.885707 B =10799.561625 C =10903.535839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.068 3.932 3 C -0.271 4.271 4 S 0.113 5.887 5 C 0.067 3.933 6 C -0.044 4.044 7 C 0.067 3.933 8 N -0.685 5.685 9 C 0.071 3.929 10 C -0.058 4.058 11 C -0.129 4.129 12 C -0.116 4.116 13 C 0.032 3.968 14 C -0.505 4.505 15 H 0.060 0.940 16 C 0.053 3.947 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.286 1.286 22 N -0.471 5.471 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.175 0.825 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.027 0.973 30 H 0.076 0.924 31 H 0.338 0.662 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.033 0.967 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.541 16.353 14.515 24.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.064 4.064 3 C -0.410 4.410 4 S 0.369 5.631 5 C -0.212 4.212 6 C -0.085 4.085 7 C -0.065 4.065 8 N -0.317 5.317 9 C -0.058 4.058 10 C -0.059 4.059 11 C -0.187 4.187 12 C -0.174 4.174 13 C -0.005 4.005 14 C -0.543 4.543 15 H 0.078 0.922 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 N -0.185 5.185 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.192 0.808 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.157 0.843 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.274 15.883 14.398 24.222 hybrid contribution 0.319 0.124 -0.531 0.632 sum -10.955 16.008 13.867 23.844 Atomic orbital electron populations 1.20365 0.87123 1.03304 1.03053 1.20357 0.98340 0.86538 1.01129 1.26781 0.95152 1.03910 1.15116 1.84054 1.07452 1.03468 1.68165 1.27066 0.94031 0.98136 1.01982 1.20292 0.95265 0.93787 0.99177 1.21868 0.97807 0.92750 0.94028 1.60522 1.17666 1.37359 1.16129 1.22119 0.99155 0.97278 0.87231 1.20628 0.92795 0.93189 0.99239 1.21777 0.98331 1.01214 0.97356 1.21603 0.99702 0.97690 0.98379 1.19139 0.96448 0.96156 0.88761 1.21274 1.24881 1.16049 0.92138 0.92212 1.25025 0.96792 0.97147 0.95726 1.69983 1.44609 1.42025 0.97172 0.86605 0.81184 0.82610 0.78021 1.19763 1.21165 1.21215 1.66154 1.04545 1.31471 1.16379 0.90560 0.90480 0.90812 0.80778 0.87667 0.89713 0.95443 0.90511 0.84262 0.91475 0.95771 0.94771 0.91669 0.94109 0.94161 0.92680 0.93833 0.96651 0.96912 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.31 36.00 0.37 -0.22 16 2 C 0.07 0.71 6.74 -84.23 -0.57 0.15 16 3 C -0.27 -2.42 11.13 29.12 0.32 -2.10 16 4 S 0.11 1.05 23.18 -107.50 -2.49 -1.44 16 5 C 0.07 0.75 6.64 -13.46 -0.09 0.66 16 6 C -0.04 -0.46 6.06 -27.89 -0.17 -0.63 16 7 C 0.07 0.83 5.67 -3.83 -0.02 0.80 16 8 N -0.68 -9.69 5.71 -113.78 -0.65 -10.34 16 9 C 0.07 1.22 4.65 -3.82 -0.02 1.20 16 10 C -0.06 -1.15 0.60 -154.51 -0.09 -1.25 16 11 C -0.13 -2.37 7.89 37.16 0.29 -2.07 16 12 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 13 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 14 C -0.51 -13.82 7.65 -34.44 -0.26 -14.09 16 15 H 0.06 1.59 5.68 -52.49 -0.30 1.30 16 16 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 17 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 18 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 N -0.47 -5.90 10.53 -8.06 -0.08 -5.99 16 23 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.39 8.12 -51.93 -0.42 -0.04 16 26 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 27 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.34 4.41 6.77 -39.29 -0.27 4.15 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 35 H 0.06 1.30 6.61 -51.93 -0.34 0.96 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 39 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -30.61 350.52 -9.41 -40.02 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.04 Total: -0.56 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -0.14 Total: -17.36 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.00 Total: -42.56 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.49 Total: -1.44 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.61 -9.41 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135146716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.186 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds